#!/bin/ksh
##############################################################################
#                                                                            #
#         run_marc - run a marc job                                          #
#         -------------------------                                          #
#                                                                            #
#  usage: run_marc -j jid { options }                                        #
#                                                                            #
#  where standard options are:                        required:   defaults:  #
#  --------------------------                                                #
#                                                                            #
#  -j*   jid         job id number.                   ** YES **    .         #
#  -pr*  prog        program name.                        .        marc      #
#  -v*   y|n         do or do not verify inputs.          .        yes       #
#  -q*   s|l|v|b|f   batch queue name or background,      .        short     #
#                    foreground.                                             #
#  -b*               as alternative to option -q*                            #
#                                                                            #
# ( batch queues only :                                                      #
#  -pq*              intra queue priority.                .        .         #
#  -at   DATE/TIME   delay start of job.                  .        .         #
#                    format : January,1,1990,12:31                           #
#                    or     : today,5pm                                      #
#  -cpu* secs        job CPU limit                        .        .       ) #
#                                                                            #
#  -r*   rid         restart file job id.                 .        .         #
#  -si*  sid         substructure file id.                .        .         #
#  -pi*  post        post file job id.                    .        .         #
#  -de*  did         defaults file                        .        no        #
#  -vf   vid         viewfactor                           .        no        #
#                                                                            #
#  -u*   user        user subroutine.                     .        .         #
#  -obj  obj         user objects or libraries.           .        .         #
#  -sa*  y|n         do or do not save load module.       .        no        #
#  -me               manual remeshing control             .        no        #
#  -ml               memory limit in Mbyte                                   #
#  -mo               This option is deprecated. As of Marc 2015, only        #
#                    the integer*8 version is available.                     #
#  -mpi              selects MPI version                                     #
#                    each platform has a default MPI version and some        #
#                    have an alternative version. see the include file       #
#                    for the respective platform                             #
#                    MPI_DEFAULT defines the default MPI version             #
#                    MPI_OTHER   defines versions one can switch to          #
#  -dcoup            for contact decoupling                                  #
#                    currently not supported                                 #
#  -dir              directory where the job i/o should take place.          #
#                    defaults to current directory.                          #
#  -sdir             directory where scratch files are created               #
#                    defaults to current directory.                          #
#                                                                            #
#  -alloc            only perform memory allocation test, no analysis        #
#  -list y           only list options in the input file, no analysis        #
#  -fe num           set feature number "num" for the run. only one allowed  #
#  -dytran           flag to switch from Dytran to Marc                      #
#                    dytran = 0, program will run w/o Marc-Dytran Switch     #
#                           = 1, program will restart Marc after Dytran run  #
#                          >= 2, Not supported yet.                          #
#                    currently not supported                                 #
#  -ou               force analysis to use out-of-core control               #
#                           =0,  not used                                    #
#                           =1,  element storage out-of-core                 #
#  -dll              run marc using shared library libmarc.so and exe_marc   #
#                           =1, used                                         #
#                           =2, do not free streaming input memory           # 
#                           =3, run with marc input deck                     #
#  -trk              run marc for post-tracking                              #
#  -gpuid            run marc using GPGPU capability                         #
#                    specify gpuid on to be used in the analysis. Multiple   #
#                    IDs may be assigned for DDM runs.                       #
#                    Separate a list of IDs with a colon. Each DMP           #
#                    process will be assigned a GPU ID in round robin fastion#
#                           = 0                                              #
#                           = 0:1 etc...                                     #
#                                                                            #
#  where parallel options are:                                               #
#  --------------------------                                                #
#                                                                            #
#  itree, host, and comp options are available for the domain                #
#  decomposition only.                                                       #
#  MARC_NUMBER_OF_THREADS, nthread, and dir options always available.        #
#                                                                            #
#                                                                            #
#  -nprocd           number of domains.                                      #
#                    defaults to single domain solution.                     #
#  -nprocds          number of domains if single input file.                 #
#                    defaults to single domain solution.                     #
#  -nps              same as -nprocds.                                       #
#  -nsolver          number of solver  tasks for solver types 12 and 13      #
#                    these are distributed tasks operating via MPI           #
#  -nthread_elem     number of threads for element assembly and recovery     #
#                    = 0: use defaults.                                      #
#                         defaults to 1 for single domain solution.          #
#                         defaults to number of domains for multi-domain     #
#                         solution.                                          #
#                    > 1: number of threads to be used by element assembly   #
#                         recovery.                                          #
#                    Also can be set through MARC_NUMBER_OF_THREADS          #
#                    environment variable.                                   #
#                    if both specified, -nthread_elem option will be used.   #
#                    defaults if neither MARC_NUMBER_OF_THREADS environment  #
#                    variable set nor -nthread_elem specified.               #
#  -nthread_solver   number of threads for solver types 6, 8, and 11         #
#                    = 0: use defaults.                                      #
#                         defaults to 1 for single domain solution.          #
#                         defaults to number of domains for multi-domain     #
#                         solution.                                          #
#                    > 1: number of threads to be used by 6, 8, and 11       #
#                    Also can be set through MARC_NUMBER_OF_THREADS          #
#                    environment variable.                                   #
#                    if both specified, -nthread_solver option will be used. #
#                    defaults if neither MARC_NUMBER_OF_THREADS environment  #
#                    variable set nor -nthread_solver specified.             #
#  -nthread          Same as -nthread_solver.                                #
#  -itree            message passing tree type for domain decomposition.     #
#                    for debugging purposes; should not normally be used.    #
#  -host             hostfile name for distributed execution on network.     #
#                    defaults to no hostfile, unless jobid.defhost exists.   #
#                    if jobid.defhost exists, only -np(s) necessary          #
#  -comp* y|n        to be used with user routines on a network of           #
#                    incompatible machines.                                  #
#                    if set to no, a separate executable will be created     #
#                    for each machine on the network.                        #
#                    if set to yes, the executable located on the machine    #
#                    from which marc is started will be used on all machines.#
#                    defaults to no if O/S versions different on machines.   #
#                                                                            #
#  -ci y|n           copy input files to remote hosts (default: yes)         #
#                    if "yes", input files are automatically copied to       #
#                    remote hosts for a network run if necessary.            #
#  -cr y|n           copy post files from remote hosts (default: yes)        #
#                    if "yes", post files are automatically copied back from #
#                    remote hosts for a network run if necessary.            #
#  -dl y|n           delete log file, if "yes" an old exisitng log file is   #
#                    deleted, no new log is created. If "no" a new log file  #
#                    is created. For job running in the background, the log  #
#                    file is always created. Default is "yes"                # 
##############################################################################
# set DIR to the directory in which this script is
REALCOM="`/bin/ls -l $0 |awk '{ print $NF; }'`"
DIR=`dirname $REALCOM`
# make sure DIR has an absolute path
case $DIR in
  \/*)
    ;;
  *)
    DIR=`pwd`/$DIR
    ;;
esac
DIRSCRIPT=$DIR
AWK=awk
ARCH=`uname -a | cut -f 1 -d " "`
# Sun has a bad awk, use nawk instead
if test $ARCH = "SunOS"
then
 AWK=nawk
fi
BASENAME=basename
# Sun has an incorrect /bin/basename, check if /usr/ucb/basename exists
if test $ARCH = "SunOS"
then
 if test -x /usr/ucb/basename
 then
  BASENAME=/usr/ucb/basename
 fi
fi

# echo command line in the case of ECHO_COMMAND is true
if test "$ECHO_COMMAND" = true ; then
 echo command "$0" "$@"
fi

#
#  "mode" selects version, i4 or i8
#    default is i4
#    this can be changed by a file run_marc_defaults
#    located in the tools directory of the Marc installation
#    or in the user's home directory
#      format:
#         MARC_MODE i8
#    it can also be set by the environmental variable MARC_INTEGER_SIZE
#    and by the command line option "-mo"
#    
mode=
modeerror=
modeoption=
if test -f $DIRSCRIPT/run_marc_defaults; then
 line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
 if test "$line" = "MARC_MODE"; then
  echo 
  echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
  echo 
  line=
 fi
 line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
 line=`echo $line | $AWK '{print $NF}'`
 if test "$line" = "i4"; then
  modeerror="defaults file $DIRSCRIPT/run_marc_defaults used mode $line ; this must be i8"
  modeoption=error
  echo $modeerror
 fi
 if test "$line" = "i8"; then
  mode=i8
 fi
fi
if test -f $HOME/run_marc_defaults; then
 line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
 if test "$line" = "MARC_MODE"; then
  echo 
  echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
  echo
  line=
 fi
 line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $HOME/run_marc_defaults`
 line=`echo $line | $AWK '{print $NF}'`
 if test "$line" = "i4"; then
  modeerror="defaults file $HOME/run_marc_defaults used mode $line ; this must be i8"
  modeoption=error
  echo $modeerror
 fi
 if test "$line" = "i8"; then
  mode=i8
 fi
fi
if test -n "$MARC_INTEGER_SIZE" ; then
 mode=$MARC_INTEGER_SIZE
fi
if test -z "$mode" ; then
 mode=i8
fi
case $mode in
    i4) 
    modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
    modeoption=error
    echo $modeerror
    ;;
    i8)
    MARC_INTEGER_SIZE=i8
    export MARC_INTEGER_SIZE
    ;;
    *)
    echo "bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
    exit
    ;;
esac

setmode=false
for arg in $* ; do
 if $setmode ; then
     mode=$arg
     case $mode in
	 i4) 
     modeerror="bad value for mode option; only i8 is supported."
     modeoption=error
     echo
     echo $modeerror
     echo
	 ;;
	 i8)
	 MARC_INTEGER_SIZE=i8
	 export MARC_INTEGER_SIZE
	 ;;
	 *)
	 echo " "
	 echo "error, version mode must be i8"
	 echo " "
	 echo "       use  -mo i8 "
	 echo " "
	 exit
	 ;;
     esac
     setmode=false
 fi
 if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
  echo  
  echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
  echo
  setmode=true
 fi
 if [ ${arg}X = -i8X -o ${arg}X = -I8X ] ; then
  MARC_INTEGER_SIZE=i8
  export MARC_INTEGER_SIZE
 fi
 if [ ${arg}X = -i4X -o ${arg}X = -I4X ] ; then
  modeerror="bad value for mode option; only i8 is supported."
  modeoption=error
  echo
  echo $modeerror
  echo
 fi
done

# set to i4 version for 32 bit Linux
if test "`uname -s`" = "Linux"; then
 if test "`uname -m`" = "i686"; then
  mode=i4
  MARC_INTEGER_SIZE=i4
  export MARC_INTEGER_SIZE
 fi
fi


. "$DIR/getarch"


# getting user subroutine file name
found=0
for i in "$@"; do
  if test $found = 1; then
    DAMASK_USER=$i
    found=0
  fi
  case $i in
    -u* | -U*)
      found=1
    ;;
  esac
done
# sourcing include_linux64 (needs DAMASK_USER to be set)
. $MARC_INCLUDE

#

#
#  Dynamically determine the echo syntax
#

case "`echo '\c'`" in
   '\c')
      ECHO='echo -n'
      ECHOTXT=' '
      ;;
   *)
      ECHO='echo'
      ECHOTXT=' \c'
      ;;
esac

#  
#  Variables for the MARC environment
#

PRODUCT="Marc"
EXITMSG=$MARC_TOOLS/MESSAGES
export EXITMSG
FLEXDIR=$DIR/../flexlm/licenses
export FLEXDIR
TIMCHK=3600
export TIMCHK
BINDIR=$MARC_BIN
export BINDIR
AFMATDAT=$MARC_RUNTIME/AF_flowmat/
export AFMATDAT
export MESHERDIR
MSC_LICENSE_FINPROC=0
export MSC_LICENSE_FINPROC
#
# define directory path to global unified material database
#
MATFILE=
export MATFILE

#
# define memory limit
#  first set to MEMLIMIT from include
#  -ml option overrules if specified
memlimit=$MEMLIMIT
#
# Define share library path based on platforms
# This is required for using the Patran Mesher
#
if test $MACHINENAME = "HP"
then
  SHLIB_PATH=$MARC_LIB:$MARC_LIB_SHARED:$SHLIB_PATH
  export SHLIB_PATH
fi
# the one for IBM is defined futher down

LD_LIBRARY_PATH=$MARC_COSIM_LIB:$MARC_LIB_SHARED:$LD_LIBRARY_PATH:$SFMATDIR
if test -f "/etc/redhat-release"; then
  ver=`cat /etc/redhat-release | sed 's/.* release \([0-9]\).\([0-9]\+\) .*/\1\2/'`
  case "$ver" in
    6*) LD_LIBRARY_PATH="${MARC_LIB_SHARED}rh67:$LD_LIBRARY_PATH" ;;
  esac
fi
LD_LIBRARY_PATH=$MARC_LIB:$LD_LIBRARY_PATH
LD_LIBRARY_PATH=$MESHERDIR:$LD_LIBRARY_PATH
LD_LIBRARY_PATH=$LD_LIBRARY_PATH
LD_LIBRARY64_PATH=$MARC_LIB:$LD_LIBRARY64_PATH
LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
export LD_LIBRARY_PATH
export LD_LIBRARY64_PATH
export LD_LIBRARYN32_PATH
 
atexit() {
kill -15 $$
#
if test $MPITYPE = "myrinet"
then
 if test -f "$host_filt"
 then
  /bin/rm $host_filt
 fi
fi
}

trap "atexit" 2

#
# defaults
#

prog=marc
exefile=marc
jid=
rid=
pid=
sid=
did=
vid=
user=
usernoext=
objs=
qid=background
cpu=
priority=
att=
trk=
verify=yes
prgsav=no
rmdll=no
cpdll=no
progdll=
pathdll=
error=
nprocd=0
nprocdddm=1
nprocdddmprint=
icreated=0
nprocdarg=
nsolver=0
nsolverarg=-ns
if test $nprocds
then
 if test $nprocds -gt 1
 then
  nprocdddm=$nprocds
  nprocdddmprint=$nprocds
  icreated=1
  nprocdarg=-nprocds
 fi
fi
ntprint=0
nt=-1
nte=-1
nts=-1
ntarg=-nt
ntearg=-nte
ntsarg=-nts
nteprint=
ntsprint=
gpuids=
nauto=
ndcoup=0
ndytran=0
noutcore=0
dllrun=0
mesh=0
itree=0
iam=
ddm_arc=0
link=
trkrun=0
DIRJOB=`pwd`
DIRSCR=$DIRJOB
DIRSCRSET=
autoforge=0
dotdat=.dat
dotdefhost=.defhost
host=
numhost=
mfile=
userhost=
makebdf=
cpinput=yes
cpresults=yes
marcdll=libmarc.$EXT_DLL
# define hostname and strip off extensions (alpha.aaa.com)
thishost=`hostname`
thishost=${thishost%%.*}
compatible=unknown
numfield=1
justlist=
feature=
mpioption=false
iprintsimufact=
SRCLIB=$MARC_LIB/srclib.a
MDSRCLIB=$MARC_LIB/mdsrc.a
#
# check run_marc_defaults file for default MPI setting
#    located in the tools directory of the Marc installation
#    or in the user's home directory
#      format:
#         MARC_MPI <mpiversion>
#    
value=
file=
if test -f $DIRSCRIPT/run_marc_defaults; then
 value=`$AWK '{if ($1 == "MARC_MPI") {print $2}}' $DIRSCRIPT/run_marc_defaults`
 value=`echo $value | $AWK '{print $NF}'`
 if test -n "$value"; then
  file=$DIRSCRIPT/run_marc_defaults
 fi
fi
if test -f $HOME/run_marc_defaults; then
 value=`$AWK '{if ($1 == "MARC_MPI") {print $2}}' $HOME/run_marc_defaults`
 value=`echo $value | $AWK '{print $NF}'`
 if test -n "$value"; then
  file=$HOME/run_marc_defaults
 fi
fi
if test -n "$value"; then
  MARC_MPITYPE=$value
  notok=true
  for i in "$MPI_OTHER"; do
   if test "$MARC_MPITYPE" = "$i"; then
     notok=false
   fi
  done
  if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then 
   notok=false
  fi
  if $notok; then
   echo " "
   echo "  error, incorrect option for MARC_MPI"
   echo "    defined in $file: $MARC_MPITYPE"
   echo "    valid options: $MPI_OTHER $MPI_DEFAULT"
   echo " "
   exit
  fi
  if test "$value" != "$MPI_DEFAULT"; then
    exefile=marc_$value
    . $MARC_INCLUDE
    MDSRCLIB=$MARC_LIB/mdsrc.a_$value
    if test "$MUMPSSOLVER" = MUMPS; then
     MUMPSSOLVERLIBS="$MUMPSLIB_DIR/libmumps_$value.a"
    fi
  fi
fi
# 
#
# allow scratch directory to be specified with environmental variable
# MARCSCRATCH
if test $MARCSCRATCH
then
 if test -d $MARCSCRATCH
 then
  DIRSCR=$MARCSCRATCH
 else
  echo "error, scratch directory '$MARCSCRATCH'"
  echo "       specified via environmental variable MARCSCRATCH does not exist"
  exit
 fi
fi
#
##############################################################################
#           parse input - arguments always come in pairs                     #
##############################################################################
deletelog=yes
arg=$1
if [ ${arg}X = -i8X -o ${arg}X = -I8X ] ; then
 shift
 arg=$1
fi
while [ -n "$arg" ]
do
	shift
	value=$1
	case $arg in
                -al* | -AL*)
                    LD_LIBRARY_PATH=$CUDALIB1:$LD_LIBRARY_PATH
                    export LD_LIBRARY_PATH
                    $MARC_BIN/marc -alloc 1
                    exit
                ;;
                -li* | -LI*)
		    justlist=yes
		;;
                -fe* | -FE*)
		    feature=$value

		;;
		-pr* | -PR*)
                        if test `dirname $value` = '.'
                        then
                          prog=`$BASENAME $value .marc`
                          progdll=`$BASENAME $value`
                        else
                          prog=`dirname $value`/`$BASENAME $value .marc`
                          progdll=`dirname $value`/`$BASENAME $value`
                        fi
                        prdir=`dirname $value`
                        case $prdir in
                            \/*)
                              ;;
                            *)
                              prog=`pwd`/$prdir/$prog
                              ;;
                        esac
		;;
		-j* | -J*)
                        jid=`$BASENAME $value $dotdat`
                        DIRJID=`dirname $value`
                        case $DIRJID in
                           \/*)
                             ;;
                           *)
                            DIRJID=`pwd`/$DIRJID
                             ;;
                        esac        
		;;
		-r* | -R*)
			rid=`$BASENAME $value .t08`
                        DIRRID=`dirname $value`
                        case $DIRRID in
                           \/*)
                             ;;
                           *)
                            DIRRID=`pwd`/$DIRRID
                             ;;
                        esac        
		;;
		-si* | -SI*)
			sid=$value
                        DIRSID=`dirname $value`
                        case $DIRSID in
                           \/*)
                             ;;
                           *)
                            DIRSID=`pwd`/$DIRSID
                             ;;
                        esac        
		;;
		-pi* | -PI*)
                        if test -f $value.t19
                        then
                         pid=`$BASENAME $value .t19`
                        else
                         pid=`$BASENAME $value .t16`
                        fi
                        DIRPID=`dirname $value`
                        case $DIRPID in
                           \/*)
                             ;;
                           *)
                            DIRPID=`pwd`/$DIRPID
                             ;;
                        esac        
		;;
                -bdf | -BDF)
                        makebdf=1
                ;;
                -de* | -DE*)
                        did=`$BASENAME $value $dotdat`
                        DIRDID=`dirname $value`
                        case $DIRDID in
                           \/*)
                             ;;
                           *)
                            DIRDID=`pwd`/$DIRDID
                             ;;
                        esac        
                ;;
                -vf  | -VF)
                        vid=`$BASENAME $value .vfs`
                        DIRVID=`dirname $value`
                        case $DIRVID in
                           \/*)
                             ;;
                           *)
                            DIRVID=`pwd`/$DIRVID
                             ;;
                        esac        
                ;;
		-u* | -U*)
                        user=$value
                        case $user in
                           \/*)
                             ;;
                           *)
                            user=`pwd`/$user
                             ;;
                        esac
						usernoext=$user
						usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
						usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
						usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
						usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
		;;
		-obj | -OBJ)
			objs="$value"
		;;
		-q* | -Q*)
			qid=$value
		;;
		-b* | -B*)
			case $value in
				y* | Y*)
				qid=background
				;;
				n* | N*)
				qid=foreground
				;;
				*)
				;;
			esac
		;;
        -dl | -DL)
            case $value in
                    y* | Y*)
                    deletelog=yes
                    ;;
                    n* | N*)
                    deletelog=no
                    ;;
                    *)
                    ;;
            esac

        ;;
		-at | -AT)
			att=$value
		;;
		-cpu* | -CPU*)
			cpu=$value
		;;
		-pq | -PQ*)
			priority=$value
		;;
		-v* | -V*)
			verify=$value
		;;
		-sa* | -SA*)
			prgsav=$value
		;;
		-np* | -NP*)
			nprocdddm=$value
			nprocdddmprint=$value
			case $arg in
				-nps* | -NPS* | -nprocds* | -NPROCDS*)
				icreated=1
				nprocdarg=-nprocds
				;;
			esac
			case $arg in
				-np | -NP | -nprocd | -NPROCD)
				icreated=0
				nprocdarg=-nprocd
				;;
			esac
		;;
		-ns* | -NS*)
			nsolver=$value
		;;
		-nt* | -NT*)
			case $arg in
				-nte | -NTE | -nthread_e* | -NTHREAD_E*)
				nte=$value
				;;
			esac
			case $arg in
				-nts | -NTS | -nthread_s* | -NTHREAD_S*)
				nts=$value
				;;
			esac
			case $arg in
				-nt | -NT | -nth* | -NTH* | -nthread* | -NTHREAD*)
				nt=$value
				;;
			esac
		;;
		-gp* | -GP*)
			gpuids=$value
		;;
		-it* | -IT*)
			itree=$value
		;;
		-iam | -IAM)
			iam=$value
			case $value in
				sfg | sfm | sim)
				iprintsimufact=true
				;;
			esac
		;;
                -au* | -AU*)
                        nauto=$value
                        echo  
                        echo warning: the option -au is no longer supported and will be ignored
                        echo
                ;;
                -dc* | -DC*)
                        ndcoup=$value
                ;;
                -dy* | -DY*)
                        ndytran=$value
                ;;
                -ou* | -OU*)
                        noutcore=$value
                ;;
                -dll | -DLL)
                        dllrun=$value
                ;;
                -trk | -TRK)
                        trkrun=$value
                ;;
                -ddm | -DDM)
                        ddm_arc=$value
                ;;
                -me | -ME  )
                        mesh=$value
                ;;
                -ml | -ML  )
                        memlimit=$value
                ;;
                -mo | -MO  )
                ;;
                -mpi | -MPI  )
                        mpioption=true
                        MARC_MPITYPE=$value
                        if test "$value" != "$MPI_DEFAULT"; then
                         exefile=marc_$value
                         . $MARC_INCLUDE
                         MDSRCLIB=$MARC_LIB/mdsrc.a_$value
                         if test "$MUMPSSOLVER" = MUMPS; then
                          MUMPSSOLVERLIBS="$MUMPSLIB_DIR/libmumps_$value.a"
                         fi
                        else
                         exefile=marc
                         . $MARC_INCLUDE
                         MDSRCLIB=$MARC_LIB/mdsrc.a
                         if test "$MUMPSSOLVER" = MUMPS; then
                          MUMPSSOLVERLIBS="$MUMPSLIB_DIR/libmumps_intelmpi.a"
                         fi
                        fi
                ;;
                -dir* | -DIR*)
                        DIRJOB=$value
                        case $DIRJOB in
                           \/*)
                             ;;
                           *)
                            DIRJOB=`pwd`/$DIRJOB
                             ;;
                        esac
                        if test -z "$DIRSCRSET"
                        then
                         DIRSCR=$DIRJOB
                        fi
                ;;
                -sd* | -SD*)
                        DIRSCR=$value
                        DIRSCRSET=yes
                        case $DIRSCR in
                           \/*)
                             ;;
                           *)
                            DIRSCR=`pwd`/$DIRSCR
                             ;;
                        esac        
                ;;
		-ho*  | -HO*)
			host=$value
		;;
		-co* | -CO*)
			compatible=$value
		;;
		-ci* | -CI*)
			cpinput=$value
		;;
		-cr* | -CR*)
			cpresults=$value
		;;
		*)
			error="$error
$arg: invalid option"
                        break
		;;
	esac
	case $value in
		-*)
			error="$error
$arg: invalid name $value"
			break
		;;
	esac
	shift
	arg=$1
        if [ ${arg}X = -i8X -o ${arg}X = -I8X -o ${arg}X = -i4X -o ${arg}X = -I4X ] ; then
         shift
         arg=$1
        fi
done
argc=`expr $# % 2`
if test $argc -eq 1
then
#
# odd number of arguments
#
	error="$error
argument list incomplete"
fi

if test $nprocdddm -gt 0
then
nprocd=$nprocdddm
fi

if test $nsolver -gt 0
then
  if test $nsolver -gt $nprocd 
  then
  nprocd=$nsolver
  fi
fi

# Set defaults
if test $nt -eq -1
then
nt=${MARC_NUMBER_OF_THREADS:-0}
fi
if test $nt -lt 0
then
nt=0
fi
if test $nte -eq -1
then
nte=${MARC_NUMBER_OF_THREADS:-0}
fi
if test $nte -lt 0
then
nte=0
fi
if test $nts -eq -1
then
nts=${MARC_NUMBER_OF_THREADS:-0}
fi
if test $nts -lt 0
then
nts=0
fi
#
# set number of element loop threads
#
ntprint=$nt
nteprint=$nte
# copy from -nprocd[s]
if test $nprocdddm -gt 1 
then
  nteprint=$nprocdddm
fi
# override with -nthread_elem option
if test $nte -ne 0
then
nteprint=$nte
fi
# check for minimum 1 threads per processes for DDM 
if test $nprocdddm -gt 1
then
  if test $nteprint -lt $nprocdddm
  then
  nteprint=$nprocdddm
  fi
fi
nte=$nteprint
#
# set number of Solver threads
#
ntsprint=$nts
# copy from -nthread or -nprocd[s]
if test $ntprint -ne 0
then
  ntsprint=$ntprint
else
  if test $nprocdddm -gt 1
  then
  ntsprint=$nprocdddm
  fi
fi
# override with -nthread_solver option
if test $nts -ne 0
then
  ntsprint=$nts
fi
# check for minimum 1 threads per solver process.
if test $nsolver -lt $nprocdddm
then
  if test $ntsprint -lt $nsolver
  then
  ntsprint=$nsolver
  fi
else
  if test $ntsprint -lt $nprocdddm
  then
  ntsprint=$nprocdddm
  fi
fi
if test $ntsprint -eq 1
then
  set ntsprint=0
fi
nts=$ntsprint

# set stack size for multi-threading.
export KMP_MONITOR_STACKSIZE=7M
export OMP_STACKSIZE=7M

#
# deprecate  -nthread option at arugment of marc
nt=0
# Reset nprocdddmm, nsolver and threads if not given.
if test $nprocdddm -eq 0 
then 
  nprocdarg=
fi  
if test $nprocdddm -eq 0 
then 
  nprocdddmprint=
fi  
if test $nprocdddm -eq 0 
then 
  nprocdddm=
fi  

nsolverprint=$nsolver
if test $nsolver -eq 0 
then 
  nsolverprint=
fi  
# end of threads setting.
gpuoption=
if test "$gpuids" = "" ; then
  gpuoption=
else
  gpuoption="-gp $gpuids"
fi

if test "$gpuids" = "" ; then
 export LD_LIBRARY_PATH=$CUDALIB1:$LD_LIBRARY_PATH
else
 MARCCUDALIBS=$MARCCUDALIBS2
 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
fi
# Linux 64 + HPMPI, Below code is taken from include_linux64 
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
then
 export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
fi
if test "$iam" = sim ; then
  SFLIB="-L$SFMATDIR -lMBA_Grain"
fi

if test $nprocd -gt 1; then
  if test -f $jid$dotdefhost; then
    if test "$host" = ""; then
      host=$jid$dotdefhost
    fi
  fi
  if test -f hostfile_qa_$nprocd; then
    if test "$host" = ""; then
      host=hostfile_qa_$nprocd
    fi
  fi
fi

if test "$dllrun" -gt 0; then
  exefile=exe_marc
  prog=exe_marc
  program=$exefile
  bd=$MARC_BIN/
  if test "$dllrun" -eq 1 || test "$dllrun" -eq 2; then
    dotdat=.inp
  fi

  if test "$progdll"; then
    /bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll 
    rmdll=yes
    pathdll=yes
    progdll=${progdll}_$marcdll
  else
    progdll=$marcdll
  fi

  if test "$user"; then
   . $MARC_TOOLS/make_marc_user_dll $DIRJOB $user
     user=
     if test $prgsav = no; then
       rmdll=yes
     fi
     if test $prgsav = yes; then
       cpdll=yes
       rmdll=yes
     fi
     pathdll=yes
  fi
fi

##############################################################################
#         check parameter validity                                           #
##############################################################################

while test forever; do

#
# check for input file existence
#
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
 if test ! -f $DIRJID/1$jid$dotdat; then
  if test "$jid" != "" ; then
    error="$error 
input file $DIRJID/1$jid$dotdat not accessible"
  fi
 fi
else
 if test ! -f $DIRJID/$jid$dotdat; then
  if test "$jid" != "" ; then
    error="$error 
input file $DIRJID/$jid$dotdat not accessible"
  fi
 fi
fi
          if test $nprocd -gt 1; then
            if test "$host" ; then
              if test ! -f $host; then
                error="$error 
host name file $host not accessible"
              fi
            fi
          fi

#
# check if the job is already running in the background
#
if test -f $DIRJOB/$jid.pid; then
  error="$error
job is already running (the file $jid.pid exists)"
fi

#
# if the program name is other than marc, then
# assume that this is a program in the users local directory
#

bd=$MARC_BIN/

case $prog in
        marc | MARC | $exefile)
                program=$exefile
                if test "$rid"
                then
                  if test ! -f $DIRRID/$rid.t08
		  then
                    error="$error
restart file $DIRRID/$rid.t08 not accessible"
                   fi
                fi
		if test "$pid"
		then
			if test ! -f $DIRPID/$pid.t16
			then
				if test ! -f $DIRPID/$pid.t19
				then
					error="$error
post file $DIRPID/$pid.t16 or $DIRPID/$pid.t19 not accessible"
				fi
			fi
		fi
		if test "$user"
		then
			if test ! -f $user
			then
		   		error="$error
user subroutine file $user not accessible"
			fi
		fi
		if test "$objs"
		then
			missingobjs=
			for o in $objs
			do
				if test ! -f "$o"
				then
					if test -z "$missingobjs"
					then
						missingobjs="$o"
					else
						missingobjs="$missingobjs $o"
					fi
				fi
			done
			if test -n "$missingobjs"
			then
		   		error="$error
user object/library file(s) $missingobjs not accessible"
			fi
		fi
                if test "$did"
                then
                        if test $nprocdddm -gt 1 -a $icreated -eq 0
                        then
                            if test ! -f $DIRDID/1$did$dotdat
                            then
                                    error="$error
defaults file $DIRDID/1$did$dotdat not accessible"
                            fi
                        else
                            if test ! -f $DIRDID/$did$dotdat
                            then
                                    error="$error
defaults file $DIRDID/$did$dotdat not accessible"
                            fi
                        fi
                fi
                if test "$vid"
                then
                        if test $nprocdddm -gt 1 -a $icreated -eq 0
                        then
                            if test ! -f $DIRVID/1$vid.vfs
                            then
                                    error="$error
view factor file $DIRVID/1$vid.vfs not accessible"
                            fi
                        else
                            if test ! -f $DIRVID/$vid.vfs
                            then
                                    error="$error
view factor file $DIRVID/$vid.vfs not accessible"
                            fi
                        fi
                fi
                if $mpioption
                then
                    notok=true
                    for i in "$MPI_OTHER"; do
                      if test "$MARC_MPITYPE" = "$i"; then
                        notok=false
                      fi
                    done
                    if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then 
                      notok=false
                    fi
                    if $notok; then
                        error="$error 
incorrect option for -mpi option: $MARC_MPITYPE  (valid: $MPI_OTHER $MPI_DEFAULT)"
                    fi
                fi
        ;;
	*)
		program=$prog.marc
                case $prog in
                  \/* | \.\/*)
 		    bd=
                  ;;
                  *)
 		    bd=`pwd`/
                  ;;
                esac
		if test "$rid"
		then
                  if test ! -f $DIRRID/$rid.t08
                  then
                    error="$error
restart file $DIRRID/$rid.t08 not accessible"
                  fi
                fi
		if test "$pid"
		then
			if test ! -f $DIRPID/$pid.t16
			then
				if test ! -f $DIRPID/$pid.t19
				then
					error="$error
post file $DIRPID/$pid.t16 and $DIRPID/$pid.t19 not accessible"
				fi
			fi
		fi
		if test "$user"
		then
	error="$error
program option may not be used with user subroutine"
		fi
		if test "$objs"
		then
	error="$error
program option may not be used with user objects or libraries"
		fi
                if test "$did"
                then
                        if test $nprocdddm -gt 1 -a $icreated -eq 0
                        then
                            if test ! -f $DIRDID/1$did$dotdat
                            then
                                    error="$error
defaults file $DIRDID/1$did$dotdat not accessible"
                            fi
                        else
                            if test ! -f $DIRDID/$did$dotdat
                            then
                                    error="$error
defaults file $DIRDID/$did$dotdat not accessible"
                            fi
                        fi
                fi
                if test "$ndcoup"
                then
                    if test $ndcoup -gt 3
                    then
                        error="$error 
incorrect option for contact decoupling "
                    fi
                fi
                if test "$ndytran"
                then
                    if test $ndytran -gt 1
                    then
                        error="$error 
incorrect option for Marc-Dytran Switch  "
                    fi
                fi
                if $mpioption
                then
                    if test ! -x $MARC_BIN/$exefile
                    then
                        error="$error 
incorrect option for -mpi option: $MARC_MPITYPE  "
                    fi
                fi
	;;
esac

##############################################################################
#          check argument integrity                                          #
##############################################################################

if test "$jid"
then
	:
else
    if test "$user"
    then
#     allow user sub without giving job id
	qid=foreground
	verify=no
    else
	error="$error
job id required"
fi
fi

case $qid in
	S* | s*)
		qid=short
	;;
	L* | l*)
		qid=long
	;;
	V* | v*)
		qid=verylong
	;;
	B* | b*)
		qid=background
	;;
	F* | f*)
		qid=foreground
	;;
	A* | a*)
		qid=at
	;;
	*)
		error="$error
bad value for queue_id option"
	;;
esac

case $prgsav in
	N* | n*)
		prgsav=no
	;;
	Y* | y*)
		prgsav=yes
	;;
	*)
		error="$error
bad value for save option"
	;;
esac

case $verify in
	N* | n*)
		verify=no
	;;
	Y* | y*)
		verify=yes
	;;
	*)
		error="$error
bad value for verify option"
	;;
esac

case $nprocdddm in
	-* )
		error="$error
bad value for nprocd option"
	;;
esac

case $nt in
	-* )
		error="$error
bad value for nt option"
	;;
esac

case $itree in
	-* )
		error="$error
bad value for itree option"
	;;
esac
case $iam in
	-* )
		error="$error
bad value for iam option"
	;;
esac
case $compatible in
	N* | n*)
		compatible=no
	;;
	Y* | y*)
		compatible=yes
	;;
	unknown)
	;;
	*)
		error="$error
bad value for comp option"
	;;
esac
case $cpinput in
	N* | n*)
		cpinput=no
	;;
	Y* | y*)
		cpinput=yes
	;;
	*)
		error="$error
bad value for copy input option"
	;;
esac
case $cpresults in
	N* | n*)
		cpresults=no
	;;
	Y* | y*)
		cpresults=yes
	;;
	*)
		error="$error
bad value for copy results option"
	;;
esac

#
# check for external file to run
#
if test -f $MARC_TOOLS/run_marc_check
then
 . $MARC_TOOLS/run_marc_check
fi

##############################################################################
# interact with the user to get the required information to run marc or      #
# other marc system program                                                  #
##############################################################################

if test $qid = background -a $verify = no
then
  deletelog=no
fi

if test "$deletelog" = no
then
echo \
"
Program name         : $prog
Marc shared lib      : $progdll
Version type         : $mode
Job ID               : $DIRJID/$jid$extra_job_info
User subroutine name : $user
User objects/libs    : $objs
Restart file job ID  : $rid
Substructure file ID : $sid
Post file job ID     : $pid
Defaults file ID     : $did
View Factor file ID  : $vid
Save generated module: $prgsav
MPI library          : $MPITYPE
DDM processes        : $nprocdddmprint
Element loop threads : $nteprint
Solver processes     : $nsolverprint
Solver threads       : $ntsprint
GPGPU option         : $gpuids
Host file name       : $host" > $jid.log
if test "$iprintsimufact" = true ; then
 echo "DDM with ARC Mapper  : $ddm_arc" >> $jid.log
fi
echo \
"Message passing type : $itree
Run job in queue     : $qid
Run directory        : $DIRJOB
Scratch directory    : $DIRSCR
Memory limit in Mbyte: $memlimit" >> $jid.log
fi
echo \
"
Program name         : $prog
Marc shared lib      : $progdll
Version type         : $mode
Job ID               : $DIRJID/$jid$extra_job_info
User subroutine name : $user
User objects/libs    : $objs
Restart file job ID  : $rid
Substructure file ID : $sid
Post file job ID     : $pid
Defaults file ID     : $did
View Factor file ID  : $vid
Save generated module: $prgsav
MPI library          : $MPITYPE
DDM processes        : $nprocdddmprint
Element loop threads : $nteprint
Solver processes     : $nsolverprint
Solver threads       : $ntsprint"
if test "$iprintsimufact" = true ; then
 echo "DDM with ARC Mapper  : $ddm_arc"
fi
echo \
"GPGPU option         : $gpuids
Host file name       : $host
Message passing type : $itree
Run job in queue     : $qid
Run directory        : $DIRJOB
Scratch directory    : $DIRSCR
Memory limit in Mbyte: $memlimit"


case $qid in
	s* | S* | l* | L* | v* | V* )
	echo \
"Queue priority       : $priority
Queue CPU limit      : $cpu
Queue start time     : $att"
	;;
#	* )
#	echo \
#" "
#	;;
esac

if test "$modeoption"
then
 error=$modeerror
fi

if test "$error"
then
	if test $verify = yes
	then
	$ECHO "$error

Please correct or quit(correct,quit,<correct>): $ECHOTXT"
		error=
		read answer
		case $answer in
			q* | Q*)
				answer=quit
			;;
			*)
				answer=correct
			;;
		esac
	else
         $ECHO "$error
         $ECHOTXT"
         echo " "
         if test "$deletelog" = no
         then
          $ECHO "$error
          $ECHOTXT"  >> $jid.log
          echo " "  >> $jid.log
         fi
         answer=quit
	fi
else
	if test $verify = yes
	then
		$ECHO "
Are these parameters correct (yes,no,quit,<no>)? $ECHOTXT"
		read answer
		case $answer in
			q* | Q*)
				answer=quit
			;;
			y* | Y*)
				answer=yes
			;;
			*)
				answer=no
			;;
		esac
	else
		answer=yes
	fi
fi

case $answer in
	no | correct)

##############################################################################
#        prompt for each value                                               #
##############################################################################

		$ECHO "
Program name ($prog)? $ECHOTXT"
		read value
		if test "$value"
		then
			prog=$value
		fi
		$ECHO "Job ID ($jid)? $ECHOTXT"
		read value
		if test "$value"
		then
                  jid=`$BASENAME $value $dotdat`
                  DIRJID=`dirname $value`
                  case $DIRJID in
                    \/*)
                    ;;
                    *)
                      DIRJID=`pwd`/$DIRJID
                    ;;
                  esac        
                fi
		$ECHO "User subroutine name ($user)? $ECHOTXT"
		read value
		if test "$value"
		then
                  case $value in
                    -*)
                      user=
                    ;;
                    *)
                      user=$value
                      case $user in
                        \/*)
                        ;;
                        *)
                          user=`pwd`/$user
                        ;;
                      esac        
					  usernoext=$user
					  usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
					  usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
					  usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
					  usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
                    ;;
                  esac
		fi
		$ECHO "User objects or libraries ($objs)? $ECHOTXT"
		read value
		if test "$value"
		then
                  case $value in
                    -*)
                      objs=
                    ;;
                    *)
                      objs="$value"
                    ;;
                  esac
		fi
		$ECHO "Restart File Job ID ($rid)? $ECHOTXT"
		read value
		if test "$value"
		then
                  case $value in
                    -*)
                      rid=
                    ;;
                    *)
                      rid=`$BASENAME $value .t08`
                      DIRRID=`dirname $value`
                      case $DIRRID in
                         \/*)
                         ;;
                         *)
                           DIRRID=`pwd`/$DIRRID
                         ;;
                      esac
                    ;;
                  esac
		fi
		$ECHO "Substructure File ID ($sid)? $ECHOTXT"
		read value
		if test "$value"
		then
                  case $value in
                    -*)
                      sid=
                    ;;
                    *)
                      sid=$value
                      DIRSID=`dirname $value`
                      case $DIRSID in
                        \/*)
                        ;;
                        *)
                          DIRSID=`pwd`/$DIRSID
                        ;;
                      esac
                    ;;
                  esac
		fi
		$ECHO "Post File Job ID ($pid)? $ECHOTXT"
		read value
		if test "$value"
		then
                  case $value in
                    -*)
                      pid=
                    ;;
                    *)
                      pid=$value
                      DIRPID=`dirname $value`
                      case $DIRPID in
                        \/*)
                        ;;
                        *)
                          DIRPID=`pwd`/$DIRPID
                        ;;
                      esac
                    ;;
                  esac
		fi
                $ECHO "Defaults File ID ($did)? $ECHOTXT"
                read value
                if test "$value"
                then
                  case $value in
                    -*)
                      did=
                    ;;
                    *)
                      did=`$BASENAME $value $dotdat`
                      DIRDID=`dirname $value`
                      case $DIRDID in
                        \/*)
                        ;;
                        *)
                          DIRDID=`pwd`/$DIRDID
                        ;;
                      esac
                    ;;
                  esac
                fi
                $ECHO "View Factor File ID ($vid)? $ECHOTXT"
                read value
                if test "$value"
                then
                  case $value in
                    -*)
                      vid=
                    ;;
                    *)
                      vid=`$BASENAME $value .vfs`
                      DIRVID=`dirname $value`
                      case $DIRVID in
                        \/*)
                        ;;
                        *)
                          DIRVID=`pwd`/$DIRVID
                        ;;
                      esac        
                    ;;
                  esac
                fi
		$ECHO "Save generated module ($prgsav)? $ECHOTXT"
		read value
		if test "$value"
		then
			prgsav=$value
		fi
		$ECHO "Run on tasks ($nprocdddm) tasks? $ECHOTXT"
		read value
		if test "$value"
		then
			nprocdddm=$value
			nprocdddmprint=$value
		fi
		$ECHO "Run on ($nte) Element loop threads ? $ECHOTXT"
		read value
		if test "$value"
		then
			nte=$value
		fi
		$ECHO "Run on ($nsolver) solvers ? $ECHOTXT"
		read value
		if test "$value"
		then
			nsolver=$value
		fi
		$ECHO "Run on ($nts) Solver threads ? $ECHOTXT"
		read value
		if test "$value"
		then
			nts=$value
		fi
#
		if test $nprocdddm -gt 0
		then
		nprocd=$nprocdddm
		fi
		if test $nsolver -gt 0
		then
		  if test $nsolver -gt $nprocd 
		  then
		  nprocd=$nsolver
		  fi
		fi
# Element loop threads.
		if test $nte -eq -1
		then
		  nte=${MARC_NUMBER_OF_THREADS:-0}
		fi
		if test $nte -lt 0
		then
		  nte=0
		fi
		nteprint=$nte
#       Copy from ddm
        if test $nprocdddm -gt 1
		  then
		    nteprint=$nprocdddm
        fi
#       override with -nthread_elem option
        if test $nte -ne 0
        then
          nteprint=$nte
        fi
#       check for minimum 1 threads per processes for DDM
        if test $nprocdddm -ne 0
        then
          if test $nteprint -lt $nprocdddm
          then
          nteprint=$nprocdddm
          fi
        fi
        nte=$nteprint
# Solver threads.
		if test $nts -eq -1
		then
		  nts=${MARC_NUMBER_OF_THREADS:-0}
		fi
		if test $nts -lt 0
		then
		  nts=0
		fi
		ntsprint=$nts
#       Copy from ddm
        if test $nprocdddm -gt 1
		  then
		    ntsprint=$nprocdddm
        fi
#       override with -nthread_solver option
        if test $nts -ne 0
        then
          ntsprint=$nts
        fi
#       check for minimum 1 threads per solver process.
        if test $nsolver -lt $nprocdddm
        then
          if test $ntsprint -lt $nsolver
          then
            ntsprint=$nsolver
          fi
        else
          if test $ntsprint -lt $nprocdddm
          then
            ntsprint=$nprocdddm
          fi
        fi
        if test $ntsprint -eq 1
        then
          set ntsprint=0
        fi
        nts=$ntsprint
#       Update print variable for -nsolver option
        nsolverprint=$nsolver
        if test $nsolver -eq 0
        then
          nsolverprint=
        fi
		$ECHO "GPGPU id option ($gpuids)? $ECHOTXT"
		read value
		if test "$value"
		then
			gpuids=$value
		fi
                if test "$gpuids" = "" ; then
                  gpuoption=
                else
                  gpuoption="-gp $gpuids"
                fi
                if test "$gpuids" = "" ; then
                 export LD_LIBRARY_PATH=$CUDALIB1:$LD_LIBRARY_PATH
                else
                 MARCCUDALIBS=$MARCCUDALIBS2
                 export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
                fi
                if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
                then
                 export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
                fi
#
		if test $nprocd -gt 1
		then
		  $ECHO "Message passing type ($itree)? $ECHOTXT"
		  read value
		  if test "$value"
		  then
			  itree=$value
		  fi
		  $ECHO "Host file name ($host)? $ECHOTXT"
		  read value
		  if test "$value"
		  then
			  host=$value
		  fi
		  if test $nprocdddm -gt 1
		  then
		  $ECHO "Single input file? $ECHOTXT"
		  read value
		  case $value in
			y* | Y*)
			  icreated=1
			  nprocdarg=-nprocds
			;;
	          esac
		  $ECHO "Compatible machines for DDM ($compatible)? $ECHOTXT"
		  read value
		  if test "$value"
		  then
			  compatible=$value
		  fi
		  $ECHO "Copy input files to remote hosts ($cpinput)? $ECHOTXT"
		  read value
		  if test "$value"
		  then
			  cpinput=$value
		  fi
		  $ECHO "Copy post files from remote hosts ($cpresults)? $ECHOTXT"
		  read value
		  if test "$value"
		  then
			  cpresults=$value
		  fi
		  fi
		fi
		$ECHO "Run the job in the queue ($qid)? $ECHOTXT"
		read value
		if test "$value"
		then
			qid=$value
		fi
		case $qid in 
			s* | S* | l* | L* | v* | V* )
			$ECHO "Queue priority ($priority)? $ECHOTXT"
			read value
			if test "$value"
			then
				priority=$value
			fi
			$ECHO "Job starts at ($att)? $ECHOTXT"
			read value
			if test "$value"
			then
				att=$value
			fi
			$ECHO "Queue CPU limit ($cpu)? $ECHOTXT"
			read value
			if test "$value"
			then
				cpu=$value
			fi
			;;
			* )
			;;
		esac
                $ECHO "Run directory ($DIRJOB)? $ECHOTXT"
                read value
                if test "$value"
                then
                    DIRJOB=$value
                    DIRSCR=$DIRJOB
                fi
                $ECHO "Scratch directory ($DIRSCR)? $ECHOTXT"
                read value
                if test "$value"
                then
                    DIRSCR=$value
                fi
	;;
	quit)
		exit 1
	;;
	*)
		break
	;;

esac

  if test $nt -eq -1
  then
  nt=${MARC_NUMBER_OF_THREADS:-0}
  fi
  if test $nt -lt 0
  then
  nt=0
  fi

done
#
if test $nt -eq 0 
then 
  ntarg=
fi  
if test $nt -eq 0 
then 
  ntprint=
fi  
if test $nt -eq 0 
then 
  nt=
fi

if test $nte -eq 0 
then 
  ntearg=
fi  
if test $nte -eq 0 
then 
  nteprint=
fi  
if test $nte -eq 0 
then 
  nte=
fi

if test $nts -eq 0 
then 
  ntsarg=
fi  
if test $nts -eq 0 
then 
  ntsprint=
fi  
if test $nts -eq 0 
then 
  nts=
fi
#
if test "$dllrun" -gt 0; then
  exefile=exe_marc
  prog=exe_marc
  program=$exefile
  bd=$MARC_BIN/
  if test "$user"; then
   . $MARC_TOOLS/make_marc_user_dll $DIRJOB $user
     user=
     pathdll=yes
     if test $prgsav = no; then
       rmdll=yes
     fi
     if test $prgsav = yes; then
       cpdll=yes
       rmdll=yes
     fi
  fi

  if test "$pathdll"; then
#
# reset share lib path
#
    if test $MACHINENAME = "HP"
    then
      SHLIB_PATH=$DIRJOB:$SHLIB_PATH
      export SHLIB_PATH
    fi
    if test $MACHINENAME = "IBM"
    then
      LIBPATH=$DIRJOB:$LIBPATH
      export LIBPATH
    fi
#
    LD_LIBRARY_PATH=$DIRJOB:$LD_LIBRARY_PATH
    LD_LIBRARY64_PATH=$DIRJOB:$LD_LIBRARY64_PATH
    LD_LIBRARYN32_PATH=$DIRJOB:$LD_LIBRARYN32_PATH
    export LD_LIBRARY_PATH
    export LD_LIBRARY64_PATH
    export LD_LIBRARYN32_PATH
  fi
fi
# end of dllrun>0


if test $program = $exefile -o $program = $prog.marc
then

# delete the old .log file unless we run in the background
if test "$deletelog" = yes
then
 if test "$jid"
 then
 /bin/rm $jid.log 2>/dev/null
 fi
else
 echo
 echo running the job in the background, see $jid.log
 echo
fi

#
# check if this is an autoforge or rezoning or radiation job
#
if test $nprocd -eq 1 -a "$jid"

then
  line=`$AWK '/^[eE][nN][dD]/ {exit} ; {print}' $DIRJID/${jid}$dotdat | grep -i "^autoforge"`
  if test "$line"
  then
   autoforge=1
  fi
  line=`$AWK '/^[eE][nN][dD]/ {exit} ; {print}' $DIRJID/${jid}$dotdat | grep -i "^rezoning"`
  if test "$line"
  then
   autoforge=1
  fi
  line=`$AWK '/^[eE][nN][dD]/ {exit} ; {print}' $DIRJID/${jid}$dotdat | grep -i "^radiation"`
  if test "$line"
  then
   autoforge=1
  fi
fi
#
# check that jobname for restarted run is not the same
# as restart file basename
#
if test "$rid"
then
 if test "$jid" = "$rid"
 then
  echo " "
  echo "ERROR: job name of current run is the same as job name"
  echo "       of the restarted job"
  echo " "
  if test "$deletelog" = no
  then
   echo " "  >> $jid.log
   echo "ERROR: job name of current run is the same as job name" >> $jid.log
   echo "       of the restarted job" >> $jid.log
   echo " " >> $jid.log
   echo "        Exit number 8" >> $jid.log
   echo " " >> $jid.log
  fi
  exit 1
 fi
fi

#
# user objects/libraries used
#

  if test "$objs"
  then
    program="$DIRJOB/$jid.marc"
    case $program in
      \/* | \.\/*)
        bd=
        ;;
      *)
        bd=`pwd`/
        ;;
    esac
    link=yes
  fi

#
# user subroutine used
#
# add DAMASK options for linking
  DAMASK="-lstdc++"

  if test "$user"
  then
    program=$usernoext.marc
    case $program in
      \/* | \.\/*)
        bd=
        ;;
      *)
        bd=`pwd`/
        ;;
    esac
    link=yes
  fi

#
# Special case for IBM using POE but not an SP machine
#  in this case we always need a host file, also for serial jobs.
#
if test $MACHINENAME = IBM -a $MPITYPE = hardware -a "$MACHINETYPE" = NONSP
then
 MP_HOSTFILE=${jid}.host
 if test -f $jid.host
 then
  /bin/rm $jid.host 2> /dev/null
 fi
 if test $nprocd -gt 1
 then
  numdom=$nprocd
  while test $numdom -gt 0
  do
   hostname -s >> $MP_HOSTFILE
   numdom=`echo $numdom | $AWK  '{sum=$1-1}; {print sum}'`
  done
 else
  hostname -s > $MP_HOSTFILE
 fi
fi
#
# check ssh for all hosts in host file
#
if test $nprocd -gt 1
then
if test $MPITYPE = "intelmpi" -a "$INTELMPI_VERSION" = "HYDRA"
  then
# get host list
  if test "$host"
  then
    line=`grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' | uniq`
#   count failing hosts
    counter=0
    for i in $line
    do
      $RSH -o  BatchMode=yes -o ConnectTimeout=10 $i uname -n
      status=$?
      if [[ $status != 0 ]] ; then
        counter=$((counter+1))
        if [ "$counter" = "1" ]; then
          echo " "
          echo " error - connection test failed... "
          echo " "
        fi
        echo " "
        echo " connection test with ssh failed on host $i"
        echo " check the following command: ssh $i uname -n "
        echo " "
      fi
    done
#   echo error message and quit
    if test $counter -ne 0
    then
      echo " "
      echo " A parallel job using IntelMPI cannot be started.   "
      echo " The ssh command must be working correctly between  "
      echo " the computers used in the analysis. Furthermore,   "
      echo " it must be set up such that it does not prompt the "
      echo " user for a password.                               "
      echo " "
      if test "$deletelog" = no
      then
        echo " " >> $jid.log
        echo " A parallel job using IntelMPI cannot be started.   ">> $jid.log
        echo " The ssh command must be working correctly between  ">> $jid.log
        echo " the computers used in the analysis. Furthermore,   ">> $jid.log
        echo " it must be set up such that it does not prompt the ">> $jid.log
        echo " user for a password.                               ">> $jid.log
        echo " " >> $jid.log
        echo "        Exit number 8" >> $jid.log
        echo " " >> $jid.log
      fi
      exit 1
    fi
  fi
fi
fi
#
# check correctness of host file; fix for user sub
#
  if test $nprocd -gt 1
  then

# construct the path name to the executable (execpath)
    execpath=$MARC_BIN/$exefile
    usersub=0
    if test $program = $prog.marc
    then
     execpath=$prog.marc
     usersub=1
    fi
    if test "$objs"
    then
     execpath="$DIRJOB/$jid.marc"
     usersub=1
    fi
    if test "$user"
    then
     execpath=$usernoext.marc
     usersub=1
    fi
    export execpath      
    execname=`$BASENAME $execpath`

    if test "$host"
    then
      userhost=$host
      case $userhost in
        \/* | \.\/*)
          ;;
        *)
          userhost=`pwd`/$userhost
          ;;
      esac

# check that the number of processes specified in the hostfile is
# equal to nprocd specified by -nprocd.
      numproc=`grep -v '^#' $host | $AWK -v sum=0 '{sum=sum+$2}; END {print sum}'`
      if test $nprocd -ne $numproc
      then
        echo " "
        echo "error, the number of processes specified in the host file"
        echo "must be equal to the number of processes given by -nprocd/-nsolver"
        echo " "
        if test "$deletelog" = no
        then
        echo " " >> $jid.log
        echo "error, the number of processes specified in the host file" >> $jid.log
        echo "must be equal to the number of processes given by -nprocd/-nsolver" >> $jid.log
        echo " " >> $jid.log
        fi
        exit 1
      fi

# check for Myrinet that the number of processes per host is 
# less than number of available user ports, 5
# .gmpi directory must exist in user's home directory
# and must have write permission from remote hosts
      if test $MPITYPE = "myrinet"
      then
        numproc=`grep -v '^#' $host | $AWK -v sum=1 '{if( $2 > 5) sum=6}; END {print sum}'`
        if test $numproc -gt 5
        then
          echo " "
          echo "error, for Myrinet the number of processes specified "
          echo "in the hostfile must not exceed 5 for a hostname"
          echo " "
          if test "$deletelog" = no
          then
          echo " " >> $jid.log
          echo "error, for Myrinet the number of processes specified " >> $jid.log
          echo "in the hostfile must not exceed 5 for a hostname" >> $jid.log
          echo " " >> $jid.log
          fi
          exit 1
        fi
        if test $MPIVERSION = "MPICH-GM1.2.1..7"
        then
          if test ! -d ~/.gmpi
          then
            echo " "
            echo "error, for Myrinet a .gmpi directory must exist "
            echo "under the user's home directory"
            echo " "
            if test "$deletelog" = no
            then
            echo " " >> $jid.log
            echo "error, for Myrinet a .gmpi directory must exist " >> $jid.log
            echo "under the user's home directory" >> $jid.log
            echo " " >> $jid.log
            fi
            exit 1
          fi
        fi
        if test $MPIVERSION = "MPICH-GM1.2.1..7"
        then
          homedir=`echo ~`
          for i in `grep -v '^#' $host | $AWK '{if (NF > 0) print $1}'`
          do
            ibase=${i%%.*}
            if test $ibase != $thishost
            then
              $RSH $i /bin/touch $homedir/.gmpi/$jid.$$ 2> tmp.$$
              if test -s tmp.$$
              then
                echo " "
                echo "error, for Myrinet a shared .gmpi directory must exist "
                echo "under the user's home directory "
                echo "with remote write permission"
                echo " "
                if test "$deletelog" = no
                then
                echo " " >> $jid.log
                echo "error, for Myrinet a shared .gmpi directory must exist " >> $jid.log
                echo "under the user's home directory " >> $jid.log
                echo "with remote write permission" >> $jid.log
                echo " " >> $jid.log
                fi
                exit 1
              else
                /bin/rm tmp.$$
                if test -f $jid.$$
                then
                 /bin/rm $jid.$$
                fi
              fi
            fi
          done
        fi
      fi

# construct the host file $jid.host which is used by mpirun
# skip lines starting with # and only consider lines with more than
# one word in them. Note that the hostfile given to this script
# has two columns: the host name and the number of shared processes
# to run on this host. mpirun wants the number of _other_
# processes to run in addition to the one being run on the machine
# on which the job is started. hence the $2-1 for fnr == 1.
      if test -f $jid.host
      then
        /bin/rm $jid.host 2> /dev/null
      fi
      if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
      then
#     HPMPI or HP hardware MPI
        grep -v '^#' $host | $AWK -v path=$execpath -v en=$execname -v us=$usersub \
                                  -v mpihpspecial="$MPIHPSPECIAL" \
'{if ( NF > 0) {\
   fnr++ ; \
   printf("-h %s -np %s",$1,$2); \
   printf(" %s",mpihpspecial); \
   if ( NF == 2 ) printf(" %s\n",path);\
        if ( NF >= 3 ) printf(" -e MPI_WORKDIR=%s", $3);\
   if ( NF >= 3 ) if (us) printf(" %s/%s\n",$3,en); else printf(" %s\n",path) \
  }\
 }' > $jid.host
#     end HPMPI or HP hardware MPI
      elif test $MACHINENAME = IBM -a $MPITYPE = hardware -a "$MACHINETYPE" = NONSP
      then
#   IBM using hardware MPI (POE)
        MP_HOSTFILE=$jid.host
        grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.host
#   end IBM using hardware MPI (POE)
# for Intel MPI, need to create a machinefile for DMP
      elif test $MACHINENAME = "LINUX" -a  $MPITYPE = "intelmpi"
      then
#   Intel MPI
        if test -f $jid.mfile
        then 
          /bin/rm $jid.mfile 2> /dev/null
        fi 
	/bin/cp $host $jid.host
        grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
#   end Intel MPI for DMP
# for Solaris HPC 7.1, need to create a machinefile for DMP
      elif test $MACHINENAME = "SUN" -a  $MPITYPE = "hardware"
      then
#   Solaris HPC 7.1
        if test -f $jid.mfile
        then
          /bin/rm $jid.mfile 2> /dev/null
        fi
        grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
#   end Solaris HPC 7.1 for DMP
# for Myrinet, construct a configuration file in ~/.gmpi
# this must be readable by each process
# format is (hostname) (port number) for each process
      elif test $MPITYPE = "myrinet"
      then
        if test $MPIVERSION = "MPICH-GM1.2.1..7"
        then
          echo $nprocd > ~/.gmpi/$jid.host
          grep -v '^#' $host | $AWK \
'BEGIN {iport[0] = 2; \
          iport[1] = 4; \
          iport[2] = 5; \
          iport[3] = 6; \
          iport[4] = 7 \
       } \
{if ( NF > 0 ) \
   for(iproc = 0; iproc < $2; iproc++) printf("%s %d\n",$1,iport[iproc]); \
}' >> ~/.gmpi/$jid.host
        else
# this is for mpich-1.2.5 and later, using the -pg option
# format: host nproc executable user arguments
# the arguments are added later
        grep -v '^#' $host | $AWK -v path=$execpath -v en=$execname -v us=$usersub -v user=`whoami` \
'{if ( NF > 0) {\
   fnr++ ; \
   if ( fnr == 1 ) printf("%s %d",$1,$2-1); \
   else printf("%s %s",$1,$2); \
   if ( NF == 2 ) printf(" %s %s\n",path,user);\
   if ( NF == 3 ) if (us) printf(" %s/%s %s\n",$3,en,user); else printf(" %s %s\n",path,user) ;\
   if ( NF == 4 ) if (us) printf(" %s/%s %s\n",$3,en,user); else printf(" %s/bin/%s %s\n",$4,en,user)  \
  }\
 }' > $jid.host
        fi
#   end Myrinet
      elif test $MACHINENAME = DEC -a $MPITYPE = hardware
      then
#   Compaq MPI via Memory Channel
        grep -v '^#' $host | $AWK '{if (NF > 0) print $1}' > $jid.host
#   end Compaq MPI
      else
#   MPICH
        grep -v '^#' $host | $AWK -v path=$execpath -v en=$execname -v us=$usersub \
'{if ( NF > 0) {\
   fnr++ ; \
   if ( fnr == 1 ) printf("%s %d",$1,$2-1); \
   else printf("%s %s",$1,$2); \
   if ( NF == 2 ) printf(" %s\n",path);\
   if ( NF == 3 ) if (us) printf(" %s/%s\n",$3,en); else printf(" %s\n",path) ;\
   if ( NF == 4 ) if (us) printf(" %s/%s\n",$3,en); else printf(" %s/bin/%s\n",$4,en)  \
  }\
 }' > $jid.host
      fi
# define the variable host and host_filt
# host_filt is used for loops over hosts
#  for Myrinet we need to use a filtered variant of userhost
#  for others we can use $host
      if test $MPITYPE = "myrinet"
      then
        if test $MPIVERSION = "MPICH-GM1.2.1..7"
        then
          host=~/.gmpi/$jid.host
	  host_filt=$jid.host_tMp
          grep -v '^#' $userhost | $AWK  '{if (NF > 0) print $1}' > $host_filt
        else
          host=$jid.host
          host_filt=$host
        fi
      else
        host=$jid.host
        host_filt=$host
        if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi" 
        then
          host_filt=$jid.mfile
        fi
      fi
# figure out if the machines in the hostfile are nfs mounted
# or distributed and set the variable "dirstatus" accordingly.
# only perform the check if user subroutine is used
# or a user subroutine executable is used
 
      numfield=1
      if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
      then
       numfield=2
      fi
      DIR1=$DIRJOB
      if test $program = $prog.marc -o -n "$user" -o -n "$objs"
      then
        counter=0
        echo " "
        echo "checking if local or shared directories for host"
        if test "$deletelog" = no
        then
        echo "checking if local or shared directories for host" >> $jid.log
        fi
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            dirstatus[$counter]="shared"
            $ECHO " $i $ECHOTXT"
            if test "$deletelog" = no
            then
            $ECHO " $i $ECHOTXT" >> $jid.log
            fi
            DIR1=$DIRJOB
            line=`grep -v '^#' $userhost | grep "^$ibase "`
            workdir=`echo $line | $AWK '{print $3}'`
            if test -n "$workdir"
            then
              DIR1=$workdir
            fi
            if test -f $jid.$$
            then
              /bin/rm $jid.$$
            fi
            $RSH $i /bin/touch $DIR1/$jid.$$ 2> tmp.$$
            if test -s tmp.$$
            then
              dirstatus[$counter]="local"
              /bin/rm tmp.$$
            else
              if test ! -f $jid.$$
              then
                dirstatus[$counter]="local"
                $RSH $i /bin/rm $DIR1/$jid.$$
              else
                /bin/rm $jid.$$
              fi
            fi
            if test -f tmp.$$
            then
              /bin/rm tmp.$$
            fi
            if test -f $jid.$$
            then
              /bin/rm $jid.$$
            fi
            echo "  ${dirstatus[$counter]}"
            if test "$deletelog" = no
            then
            echo "  ${dirstatus[$counter]}" >> $jid.log
            fi
          fi
        done
        echo " "
        if test "$deletelog" = no
        then
        echo " " >> $jid.log
        fi
      fi

# figure out if this is a compatible set of machines
# unless explicitly specified with flag -comp
# only perform the check if user subroutine is used
# or a user subroutine executable is used
# Myrinet does not support heterogeneous
      if test $program = $prog.marc -o -n "$user" -o -n "$objs"
      then
      if test $compatible = "unknown"
      then
        thisname=$ARCH
        compatible=yes
        counter=0
        echo "checking if machines are compatible for host"
        if test "$deletelog" = no
        then
        echo "checking if machines are compatible for host" >> $jid.log
        fi
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            compstatus[$counter]="yes"
            $ECHO  " $i $ECHOTXT"
            if test "$deletelog" = no
            then
            $ECHO  " $i $ECHOTXT" >> $jid.log
            fi
            othername=`$RSH $i uname -a | cut -f 1 -d " "`
            if test $thisname != $othername
            then
              compatible=no
              compstatus[$counter]="no"
            fi
          fi
          echo "  ${compstatus[$counter]}"
          if test "$deletelog" = no
          then
          echo "  ${compstatus[$counter]}" >> $jid.log
          fi
        done
        echo " "
        if test "$deletelog" = no
        then
         echo " " >> $jid.log
        fi
      else
        counter=0
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            compstatus[$counter]=$compatible
          fi
        done
        if test $compatible = "no"
        then
          echo "all machines assumed incompatible"
          if test "$deletelog" = no
          then
          echo "all machines assumed incompatible" >> $jid.log
          fi
        else
          echo "all machines compatible"
          if test "$deletelog" = no
          then
          echo "all machines compatible" >> $jid.log
          fi
        fi
      fi
# error out if user objects or libraries are used on incompatible machines
      if test "$compatible" = "no" -a -n "$objs"
      then
        echo "User object/libraries cannot be used in a parallel job on incompatible machines"
        if test "$deletelog" = no
        then
          echo "User object/libraries cannot be used in a parallel job on incompatible machines" >> $jid.log
        fi
        exit 1
      fi
# modify new host file if NFS mounted heterogeneous machine
      doit=
      if test $program = $prog.marc 
      then
        doit=yes
      fi
      if test "$user"
      then
        doit=yes
      fi
      if test "$doit"
      then
        counter=0
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            if test ${dirstatus[$counter]} = "shared" -a  ${compstatus[$counter]} = "no"
            then
              $AWK -v hst=$i '{fnr++ ; \
if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
        /bin/mv $jid.host{$$} $jid.host
              host=$jid.host
            fi            
          fi
        done        
      fi
      fi  #   if test $program = $prog.marc -o $user -o $obj
 
    else   # if test $host
      # assume shared memory machine if no hostfile given and
      # MPITYPE is set to mpich or Myrinet
      # check for Myrinet that the total number of processes is 
      # less than number of available user ports, 5
      if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
      then
        numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
        echo `hostname` $numproc $execpath > $jid.host
        host=$jid.host
      elif test $MPITYPE = "myrinet" 
      then
        if test $nprocd -gt 5
        then
          echo " "
          echo "error, for Myrinet the number of processes "
          echo "must not exceed 5 for a hostname"
          echo " "
          if test "$deletelog" = no
          then
          echo " " >> $jid.log
          echo "error, for Myrinet the number of processes " >> $jid.log
          echo "must not exceed 5 for a hostname" >> $jid.log
          echo " " >> $jid.log
          fi
          exit 1
        fi
        if test $MPIVERSION = "MPICH-GM1.2.1..7"
        then
        echo $nprocd > ~/.gmpi/$jid.host
        echo `hostname` $nprocd | $AWK \
'BEGIN {iport[0] = 2; \
        iport[1] = 4; \
        iport[2] = 5; \
        iport[3] = 6; \
        iport[4] = 7 \
       } \
   {for(iproc = 0; iproc < $2; iproc++) printf("%s %d\n",$1,iport[iproc])} \
' >> ~/.gmpi/$jid.host
        host=~/.gmpi/$jid.host
        else
        numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
        echo `hostname` $numproc $execpath > $jid.host

      fi
      fi  # if test myrinet

    fi     # if test $host

  fi  # if test $nprocd -gt 1
 
fi    # if test $program = $exefile -o $program = $prog.marc

##############################################################################
#         construct run stream (Marc only)                                   #
##############################################################################

# set maximum message length for ddm to a large number
# for vendor provided mpi
if test $itree -eq 0 -a $MPITYPE = hardware
then
 itree=100000000
 if test $MACHINENAME = SGI
  then
   itree=100000001
  fi
fi
if test $itree -eq 0 -a $MPITYPE = hpmpi
then
 itree=100000000
fi
if test $itree -eq 0 -a $MPITYPE = myrinet
then
 itree=100000000
fi
if test $itree -eq 0 -a $MPITYPE = nec
then
 itree=100000000
fi
if test $itree -eq 0 -a $MPITYPE = scali
then
 itree=100000000
fi
if test $itree -eq 0 -a $MPITYPE = intelmpi
then
 itree=100000000
fi
if test $nprocdddm -lt 2
then
 nprocdarg=
else
 nprocdarg="$nprocdarg $nprocdddm"
fi
if test $nsolver -eq 0
then
 nsolverarg=
else
 nsolverarg="$nsolverarg $nsolver"
fi
if test $nprocdddm -lt 2 -a $nsolver -eq 0
then 
nprocd=0
fi
if test $nprocd -gt 0
then
 if test "$host"
 then
   if test -z "$RUN_JOB2"
   then
    echo " "
    echo "error: parallel job attempted on non-parallel version,"
    echo "       or, if parallel version is installed, the include " 
    echo "       file is probably corrupted"
    echo " "
    if test "$deletelog" = no
    then
    echo " " >> $jid.log
    echo "error: parallel job attempted on non-parallel version," >> $jid.log
    echo "       or, if parallel version is installed, the include "  >> $jid.log
    echo "       file is probably corrupted" >> $jid.log
    echo " " >> $jid.log
    fi
    exit
   fi
   if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
   then
    RUN_JOB="$RUN_JOB2 $host -- -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   elif test $MACHINENAME = IBM -a $MPITYPE = hardware -a "$MACHINETYPE" = NONSP
   then
    RUN_JOB="$RUN_JOB2 $bd$program -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   elif test $MPITYPE = "myrinet"
   then
    if test $MPIVERSION = "MPICH-GM1.2.1..7"
    then
     RUN_JOB="$RUN_JOB2 $host $bd$program -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
    else
     RUN_JOB_TMP="$RUN_JOB2 $host $bd$program"
     RUN_JOB=" -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
    fi
   elif test $MACHINENAME = DEC -a $MPITYPE = hardware
   then
    RUN_JOB="$RUN_JOB2 $nprocd -hf $host $bd$program -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   elif test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
   then
    numhost=`uniq $jid.mfile | wc -l`
    if test "$INTELMPI_VERSION" = "HYDRA"
    then
      RUN_JOB_TMP="$RUN_JOB2 -configfile $jid.cfile"
    else
      export I_MPI_JOB_CONTEXT=$$
      mpdboot -n $numhost -r $RSH -f $jid.mfile
      RUN_JOB_TMP="$RUN_JOB2 $jid.cfile"
    fi

# intelmpi uses configfile. format:
#    -host host1 -n n1 executable marcargs
# one such line per host
# collect the marcargs in RUN_JOB and construct the config file later
# collect the run stream in RUN_JOB_TMP
    RUN_JOB="-jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "


   elif test $MACHINENAME = "SUN" -a $MPITYPE = "hardware"
   then
    RUN_JOB="$RUN_JOB2 $jid.mfile -n $nprocd $bd$program -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   else
    RUN_JOB="$RUN_JOB2 $host $bd$program -jid $jid -dirjid $DIRJID \
$nprocdarg \
$nsolverarg \
-maxnum $MAXNUM -itree $itree \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   fi
   if test "$userhost"
   then
    RUN_JOB="$RUN_JOB -mhost $userhost"
   fi
   if test $MPITYPE = "scali"
   then
# set default working directory to /tmp to allow
# different directory names
    SCAMPI_WORKING_DIRECTORY=/tmp
    export SCAMPI_WORKING_DIRECTORY
   fi
 else
   if test -z "$RUN_JOB1"
   then
    echo " "
    echo "error: parallel job attempted on non-parallel version,"
    echo "       or, if parallel version is installed, the include " 
    echo "       file is probably corrupted"
    echo " "
    if test "$deletelog" = no
    then
    echo " " >> $jid.log
    echo "error: parallel job attempted on non-parallel version," >> $jid.log
    echo "       or, if parallel version is installed, the include "  >> $jid.log
    echo "       file is probably corrupted" >> $jid.log
    echo " " >> $jid.log
    fi
    exit
   fi
   RUNNPROCD=$nprocd
   if test $MACHINENAME = "IBM" -a $MPITYPE = "hardware"
   then
     RUNNPROCD=
     MP_PROCS=$nprocd
     export MP_PROCS
   fi
   if test $MPITYPE = "myrinet"
   then
     RUN_JOB="$RUN_JOB1 $RUNNPROCD  $bd$program -jid $jid -dirjid $DIRJID \
     $nprocdarg \
     $nsolverarg \
     -maxnum $MAXNUM -itree $itree \
     $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   else
     RUN_JOB="$RUN_JOB1 $RUNNPROCD $bd$program -jid $jid -dirjid $DIRJID \
     $nprocdarg \
     $nsolverarg \
     -maxnum $MAXNUM -itree $itree \
     $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   fi
   if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
   then
    if test "$INTELMPI_VERSION" = "HYDRA"
    then
      echo " " > /dev/null
    else
      export I_MPI_JOB_CONTEXT=$$
      mpdboot -n 1 -f $jid.hosts
    fi
    RUN_JOB="$RUN_JOB1 $RUNNPROCD $bd$program -jid $jid -dirjid $DIRJID \
     $nprocdarg \
     $nsolverarg \
     -maxnum $MAXNUM -itree $itree \
     $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
   fi
 fi
else
 if test $ndcoup -gt 0
 then
   RUN_JOB="$RUN_JOB0 $BINDIR/exe_auto $bd$program -jid $jid -dirjid $DIRJID \
-maxnum $MAXNUM \
 $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
 else
# this is for a serial job without auto restart:
   RUN_JOB="$RUN_JOB0 $bd$program -jid $jid -dirjid $DIRJID \
-maxnum $MAXNUM \
$ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
 fi
fi
if test "$rid"
then
 RUN_JOB="$RUN_JOB -rid $rid -dirrid $DIRRID"
fi
if test "$pid"
then
 RUN_JOB="$RUN_JOB -pid $pid -dirpid $DIRPID"
fi
if test "$sid"
then
 RUN_JOB="$RUN_JOB -sid $sid -dirsid $DIRSID"
fi
if test "$did"
then
 RUN_JOB="$RUN_JOB -def $did -dirdid $DIRDID"
fi
if test "$vid"
then
 RUN_JOB="$RUN_JOB -vf $vid -dirvid $DIRVID"
fi
if test $ndcoup -gt 0
then
 RUN_JOB="$RUN_JOB -dcoup $ndcoup "
fi
if test $ndytran -gt 0
then
 RUN_JOB="$RUN_JOB -dytran $ndytran "
fi
if test $mesh -gt 0
then
 RUN_JOB="$RUN_JOB -me $mesh "
fi
if test $noutcore -gt 0
then
 RUN_JOB="$RUN_JOB -outcore $noutcore "
fi
if test "$dllrun" -gt 0
then
 RUN_JOB="$RUN_JOB -dll $dllrun "
fi
if test "$trkrun" -gt 0
then
 RUN_JOB="$RUN_JOB -trk $trkrun "
fi
if test "$iam"
then
 RUN_JOB="$RUN_JOB -iam $iam "
fi
if test "$justlist"
then
 RUN_JOB="$RUN_JOB -list 1 "
fi
if test "$feature"
then
 RUN_JOB="$RUN_JOB -feature $feature "
fi
if test "$memlimit" -ne 0
then
 RUN_JOB="$RUN_JOB -ml $memlimit "
fi
if test "$cpinput"
then
 RUN_JOB="$RUN_JOB -ci $cpinput "
fi
if test "$cpresults"
then
 RUN_JOB="$RUN_JOB -cr $cpresults "
fi
if test "$DIRSCR" != "$DIRJOB"
then
 RUN_JOB="$RUN_JOB -dirscr $DIRSCR"
else
 DIRSCR=$DIRJOB
fi
if test "$makebdf"
then
 RUN_JOB="$RUN_JOB -bdf $makebdf "
fi
if test $MPITYPE = "myrinet" -a "$host" -a "$MPIVERSION" != "MPICH-GM1.2.1..7"
then
 # append $RUN_JOB to all lines of the host file
 # and set RUN_JOB
 $AWK  -v args="$RUN_JOB" '{print $0,args}' $host > $host.$$
 /bin/mv $host.$$ $host
 RUN_JOB=$RUN_JOB_TMP
fi
if test $MPITYPE = "intelmpi" -a "$host"
then
  # construct config file, append $RUN_JOB to all lines of the config file
  # and set RUN_JOB
  if test "$INTELMPI_VERSION" = "HYDRA"
  then
    grep -v '^#' $host | $AWK -v args="$RUN_JOB" -v path=$execpath -v en=$execname -v us=$usersub \
    '{if ( NF > 0) {\
    printf(" -host %s",$1); \
    printf(" -n %s",$2); \
    if ( NF == 2 ) printf(" %s",path);\
    if ( NF >= 3 ) printf(" -wdir %s ",$3); \
    if ( NF >= 3 ) if (us) printf(" %s/%s",$3,en); else printf(" %s",path); \
    printf(" %s\n",args); \
    }\
    }' > $jid.cfile
  else
    grep -v '^#' $host | $AWK -v args="$RUN_JOB" -v path=$execpath -v en=$execname -v us=$usersub \
    '{if ( NF > 0) {\
    printf("-host %s -n %s",$1,$2); \
    if ( NF == 2 ) printf(" %s",path);\
    if ( NF >= 3 ) printf(" -wdir %s ",$3); \
    if ( NF >= 3 ) if (us) printf(" %s/%s",$3,en); else printf(" %s",path); \
    printf(" %s\n",args); \
    }\
    }' > $jid.cfile
  fi
  RUN_JOB=$RUN_JOB_TMP
fi
echo " "
echo "Final run stream value"
echo " RUNJOB="$RUN_JOB
if test "$deletelog" = no
then
echo " " >> $jid.log
echo "Final run stream value" >> $jid.log
echo " RUNJOB="$RUN_JOB >> $jid.log
fi


#
# check for external file to run using valgrind
#
if test -f $MARC_TOOLS/run_marc_valgrind
then
 . $MARC_TOOLS/run_marc_valgrind
fi


##############################################################################
#         run the requested program in a queue                               #
##############################################################################

if test "$deletelog" = yes
then
 echo
 date
else
 echo >> $jid.log
 date >> $jid.log
fi
if [ $qid = short -o $qid = long -o $qid = verylong -o $qid = at ]
then

/bin/rm -f $jid.runmarcscript


#
# compile user subroutine if present
#
if test "$link"
then
    if test -z "$FCOMPROOT"; then
        echo "$0: No compiler available"
        echo
        echo "         $PRODUCT Exit number 3"
        exit 1
    fi
    echo
    echo "Using compiler from: $FCOMPROOT"
    echo
    if test "$user"
    then
        userobj=$usermoext.o
    fi
    cat > $jid.runmarcscript << END4
    if test "$user"
    then
        if test $MACHINENAME = "CRAY"
        then
            $DFORTLOWMP $user || \
                {
                echo "$0: compile failed for $user"
                exit 1
                }
            /bin/rm $program 2>/dev/null
        else
            $DFORTLOWMP $user -o $userobj || \
                {
                echo "$0: compile failed for $user"
                exit 1
                }
            /bin/rm $program 2>/dev/null
        fi
    fi


    $LOAD $bd${program} $MARC_LIB/main.o \
    $MARC_LIB/blkdta.o $MARC_LIB/comm?.o \
    ${userobj-} \
    $objs \
    $SRCLIB \
    $MNFLIBS \
    $MDUSER  \
    ${MUMPSSOLVERLIBS} \
    $MDSRCLIB \
    $MARC_LIB/mcvfit.a \
    $STUBS \
    $SOLVERLIBS  \
    $MARCCUDALIBS  \
    $TKLIBS  \
    $MRCLIBS     \
    $METISLIBS \
    $DAMASK   \
    $SFLIB  \
    $OPENSSL_LIB \
    $SYSLIBS  \
    $SECLIBS      || \
    {
    echo "$0: link failed for ${user:+$userobj }$objs"
    exit 1
    }
END4
else
	prgsav=yes
fi
/bin/rm $userobj 2>/dev/null
/bin/rm $DIRJOB/*.mod 2>/dev/null
/bin/rm $DIRJOB/*.smod 2>/dev/null

#
# run marc
#

cat >> $jid.runmarcscript << END5

# Define share library path based on platforms
# This is required for using the Patran Mesher
if test $MACHINENAME = "IBM"
then
  LIBPATH=$MARC_LIB:$MARC_LIB_SHARED:$LIBPATH
  export LIBPATH
fi

# first remove all .out files and incremental restart files
#  the ones for ddm are removed in the code
if test $nprocdddm -gt 1
then
  numdom=$nprocdddm
  while test \$numdom -gt 0
  do
  /bin/rm $DIRJOB/$numdom$jid.out 2>/dev/null
  /bin/rm $DIRJOB/$numdom$jid.log 2>/dev/null
  /bin/rm $DIRJOB/$numdom${jid}_i_*.t08 2>/dev/null
  numdom=\`echo \$numdom | $AWK   '{sum=\$1-1}; {print sum}'\`
  done
else
  /bin/rm $DIRJOB/$jid.out 2>/dev/null
  /bin/rm $DIRJOB/${jid}_i_*.t08 2>/dev/null
fi

if test $nprocdddm -gt 1
then
    $RUN_JOB   2>>$jid.log
else
    $RUN_JOB 2>>$jid.log
fi

if test $dllrun -eq 0; then
  if test $prgsav = no
  then
      /bin/rm -f $bd$program 2>/dev/null	
  fi
else
  if test $cpdll = yes; then
     filename=$usernoext
     /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
  fi
  if test $rmdll = yes
  then
     /bin/rm -f $DIRJOB/$marcdll 2>/dev/null	
  fi
fi
 
if test $nprocdddm -gt 1
then
  numdom=$nprocdddm
  while test \$numdom -gt 0
  do
  /bin/rm $DIRSCR/$numdom$jid.t02 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t03 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t11 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t12 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t13 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t14 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t15 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t22 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t23 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t32 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t33 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t74 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t75 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t76 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t77 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t78 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t79 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t81* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t82* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t83* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t84 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t85 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t86 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t87 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t88 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t90 2>/dev/null
  numdom=\`echo \$numdom | $AWK   '{sum=\$1-1}; {print sum}'\`
  done
  /bin/rm $DIRJOB/$jid.pid 2>/dev/null
else
  /bin/rm $DIRSCR/$jid.t02 2>/dev/null
  /bin/rm $DIRSCR/$jid.t03 2>/dev/null
  /bin/rm $DIRSCR/$jid.t11 2>/dev/null
  /bin/rm $DIRSCR/$jid.t12 2>/dev/null
  /bin/rm $DIRSCR/$jid.t13 2>/dev/null
  /bin/rm $DIRSCR/$jid.t14 2>/dev/null
  /bin/rm $DIRSCR/$jid.t15 2>/dev/null
  /bin/rm $DIRSCR/$jid.t22 2>/dev/null
  /bin/rm $DIRSCR/$jid.t23 2>/dev/null
  /bin/rm $DIRSCR/$jid.t32 2>/dev/null
  /bin/rm $DIRSCR/$jid.t33 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t81* 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t82* 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t83* 2>/dev/null
  /bin/rm $DIRSCR/$jid.t84 2>/dev/null
  /bin/rm $DIRJOB/$jid.pid 2>/dev/null
fi
END5


# Submit to marc batch  queue
#
if [ $qid = at ]
then
QUENAME=at
SUBMCMD=
else
#
# Submit to qsub queue
#
QUENAME=qsub
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
if test "$priority" 
then
	SUBMCMD=$SUBMCMD" -p $priority"
fi
if test "$att" 
then
	SUBMCMD=$SUBMCMD" -a $att"
fi
if test "$cpu" 
then
	SUBMCMD=$SUBMCMD" -lt $cpu"
fi

fi
echo $QUENAME $SUBMCMD
#cat $jid.runmarcscript
$QUENAME $SUBMCMD < $jid.runmarcscript

/bin/rm -f $jid.runmarcscript

##############################################################################
#         run the requested program in the background                        #
##############################################################################

else
if test $qid = background
then

#
# first remove all old .out files
#  the ones for ddm are removed in the code
if test $nprocdddm -gt 1
then
  numdom=$nprocdddm
  while test $numdom -gt 0
  do
  /bin/rm $DIRJOB/$numdom$jid.out 2>/dev/null
  /bin/rm $DIRJOB/$numdom$jid.log 2>/dev/null
  numdom=`echo $numdom | $AWK   '{sum=$1-1}; {print sum}'`
  done
else
  /bin/rm $DIRJOB/$jid.out 2>/dev/null
fi
#
# compile user subroutine if present
#
(
if test "$link"
then
  if test -z "$FCOMPROOT"; then
      echo "$0: No compiler available"
      echo
      echo "         $PRODUCT Exit number 3"
      exit 1
  fi
  echo
  echo "Using compiler from: $FCOMPROOT"
  echo
  if test "$user"
  then
    # compile and link on other hosts in $host if compstatus=no
    if test $nprocd -gt 1
    then
      if test "$userhost"
      then
        counter=0
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            if test ${compstatus[$counter]} = "no"
            then
              DIR1=$DIRJOB
              DIR2=$DIR
              line=`grep -v '^#' $userhost | grep "^$ibase "`
              workdir=`echo $line | $AWK '{print $3}'`
              marcdir=`echo $line | $AWK '{print $4}'`
              if test -n "$workdir"
              then
                DIR1=$workdir
              fi
              if test -n "$marcdir"
              then
                DIR2=$marcdir
              fi
              # first copy over the user sub if local directories
              if test ${dirstatus[$counter]} = "local"
              then
               $RCP $user $i:$DIR1/
              fi
              # do the compilation on the other machine
              if test ${dirstatus[$counter]} = "shared"
              then
                hname=_$ibase
              else
                hname=
              fi
              remoteprog=$DIR1/${execname}$hname
              remoteuser=$DIR1/`$BASENAME $user`
              $RSH $i /bin/rm $remoteprog 2> /dev/null
              echo
              $RSH $i $DIR2/tools/comp_damask_lmp $DIR2 $DIR1 $remoteuser $remoteprog
              # check if successful, the new executable should be there
              line=`$RSH $i /bin/ls $remoteprog 2> /dev/null`
              if test "$line"
              then
                echo compilation and linking successful on host $i
              else
                echo "$0: compile failed for $user on host $i"
                echo "         $PRODUCT Exit number 3"
                exit 1
              fi
              # remove the user subroutine on remote machine
              if test ${dirstatus[$counter]} = "local"
              then
               $RSH $i /bin/rm $remoteuser 2> /dev/null
              fi
            fi
          fi
        done
      fi
    fi
    if test "$userhost"
    then
      echo
      echo "Compiling and linking user subroutine $user on host `hostname`"
    fi
    userobj=$usernoext.o
        if test $MACHINENAME = "CRAY"
        then
            $DFORTLOWMP $user || \
                {
                echo "$0: compile failed for $user"
                echo "         $PRODUCT Exit number 3"
                exit 1
                }
            /bin/rm $program 2>/dev/null
        else
            $DFORTLOWMP $user -o $userobj || \
                {
                echo "$0: compile failed for $user"
                echo "         $PRODUCT Exit number 3"
                exit 1
                }
            /bin/rm $program 2>/dev/null
        fi
  fi # if test $user


  $LOAD $bd${program} $MARC_LIB/main.o \
  $MARC_LIB/blkdta.o $MARC_LIB/comm?.o \
  ${userobj-} \
  $objs \
  $SRCLIB \
  $MNFLIBS \
  $MDUSER  \
  ${MUMPSSOLVERLIBS} \
  $MDSRCLIB \
  $MARC_LIB/mcvfit.a \
  $STUBS \
  ${SOLVERLIBS}  \
  ${MARCCUDALIBS}  \
  $TKLIBS  \
  $MRCLIBS     \
  $METISLIBS \
  $DAMASK \
  $SFLIB  \
  $OPENSSL_LIB \
  $SYSLIBS  \
  $SECLIBS    || \
  {
    echo "$0: link failed for ${user:+$userobj }$objs"
    echo "         $PRODUCT Exit number 3"
    exit 1
  }
  # copy user subroutine executable for hosts using local working dir
  if test $nprocd -gt 1
  then
    if test "$userhost"
    then
        counter=0
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
            then            
              DIR1=$DIRJOB
              line=`grep -v '^#' $userhost | grep "^$ibase "`
              workdir=`echo $line | $AWK '{print $3}'`
              if test -n "$workdir"
              then
                DIR1=$workdir
              fi
              echo "Copying executable to host ${i}"
              $RCP $program ${i}:${DIR1}/
            fi
          fi
        done
    fi
  fi
else # if test $link
	prgsav=yes
fi   # if test $link
/bin/rm $userobj 2>/dev/null
/bin/rm $DIRJOB/*.mod 2>/dev/null
/bin/rm $DIRJOB/*.smod 2>/dev/null

#
# run marc

#

# Define share library path based on platforms
# This is required for using the Patran Mesher
if test $MACHINENAME = "IBM"
then
  LIBPATH=$MARC_LIB:$MARC_LIB_SHARED:$LIBPATH
  export LIBPATH
fi

# for DDM with ARC support

if test $ddm_arc -gt 0; then
  RUN_JOB="$BINDIR/exeddm $RUN_JOB -ddm $ddm_arc "
fi


$RUN_JOB &

marcpid=$!
echo $marcpid > $DIRJOB/$jid.pid
wait $marcpid

if test $nprocd -gt 1
then
  if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
  then
    if test "$INTELMPI_VERSION" = "HYDRA"
    then
      if test "$host"
      then
        /bin/rm $jid.mfile  2> /dev/null
        /bin/rm $jid.hosts  2> /dev/null
        /bin/rm $jid.host   2> /dev/null
        /bin/rm $jid.cfile  2> /dev/null
      fi
    fi
  fi
fi


if test $dllrun -eq 0; then
if test $prgsav = no
then
  /bin/rm -f $bd$program 2>/dev/null	
  # for network run, remove executable on remote machines
  # and executables with modified name
  if test $nprocd -gt 1
  then
    if test "$userhost"
    then
      counter=0
      if test -f "$host_filt"
      then
      for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
      do
        ibase=${i%%.*}
        if test $ibase != $thishost
        then
          counter=$((counter+1))
          DIR1=$DIRJOB
          line=`grep -v '^#' $userhost | grep "^$ibase "`
          workdir=`echo $line | $AWK '{print $3}'`
          if test -n "$workdir"
          then
            DIR1=$workdir
          fi
          #  if an incompatible host uses shared directory,
          #  then the root machine deletes the executable
          if test ${dirstatus[$counter]} = "shared" -a  ${compstatus[$counter]} = "no"
          then
            hname=_$ibase
            /bin/rm ${execname}$hname
          fi
          # if local directory used, the remote machine
          # deletes the executable
          if test ${dirstatus[$counter]} = "local"
          then
            $RSH $i /bin/rm $DIR1/${execname} 2>/dev/null
          fi
        fi
      done
    fi
  fi
fi
fi
else
#dllrun >0
  if test $cpdll = yes; then
     filename=$usernoext
     /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
  fi
  if test $rmdll = yes;then
     /bin/rm -f $DIRJOB/$marcdll 2>/dev/null	
  fi
fi
if test $nprocdddm -gt 1
then
  numdom=$nprocdddm
  while test $numdom -gt 0
  do
  /bin/rm $DIRSCR/$numdom$jid.t02 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t03 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t11 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t12 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t13 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t14 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t15 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t22 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t23 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t32 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t33 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t74 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t75 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t76 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t77 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t78 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t79 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t81* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t82* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t83* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t84 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t85 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t86 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t87 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t88 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t90 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.sle 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.sin 2>/dev/null
  numdom=`echo $numdom | $AWK   '{sum=$1-1}; {print sum}'`
  done
  /bin/rm $DIRJOB/$jid.pid 2>/dev/null
  if test $MPITYPE = "myrinet"
  then
   if test -f "$host_filt"
   then
    /bin/rm $host_filt
   fi
  fi
else
  /bin/rm $DIRSCR/$jid.t02 2>/dev/null
  /bin/rm $DIRSCR/$jid.t03 2>/dev/null
  /bin/rm $DIRSCR/$jid.t11 2>/dev/null
  /bin/rm $DIRSCR/$jid.t12 2>/dev/null
  /bin/rm $DIRSCR/$jid.t13 2>/dev/null
  /bin/rm $DIRSCR/$jid.t14 2>/dev/null
  /bin/rm $DIRSCR/$jid.t15 2>/dev/null
  /bin/rm $DIRSCR/$jid.t22 2>/dev/null
  /bin/rm $DIRSCR/$jid.t23 2>/dev/null
  /bin/rm $DIRSCR/$jid.t32 2>/dev/null
  /bin/rm $DIRSCR/$jid.t33 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t81* 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t82* 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t83* 2>/dev/null
  /bin/rm $DIRSCR/$jid.t84 2>/dev/null
  /bin/rm $DIRJOB/$jid.pid 2>/dev/null
  /bin/rm $DIRJOB/$jid.sle 2>/dev/null
  /bin/rm $DIRJOB/$jid.sin 2>/dev/null
fi
) 1>>$jid.log 2>&1 &


##############################################################################
#        run the requested program in the foreground                         #
##############################################################################

else

#
# compile user subroutine if present
#
if test "$link"
then
  if test -z "$FCOMPROOT"; then
      echo "$0: No compiler available"
      echo
      echo "         $PRODUCT Exit number 3"
      exit 1
  fi
  echo
  echo "Using compiler from: $FCOMPROOT"
  echo
  if test "$user"
  then
    # compile and link on other hosts in $host if compstatus=no
    if test $nprocd -gt 1
    then
      if test "$userhost"
      then
        counter=0
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            if test ${compstatus[$counter]} = "no"
            then
              DIR1=$DIRJOB
              DIR2=$DIR
              line=`grep -v '^#' $userhost | grep "^$ibase "`
              workdir=`echo $line | $AWK '{print $3}'`
              marcdir=`echo $line | $AWK '{print $4}'`
              if test -n "$workdir"
              then
                DIR1=$workdir
              fi
              if test -n "$marcdir"
              then
                DIR2=$marcdir
              fi
              # first copy over the user sub if local directories
              if test ${dirstatus[$counter]} = "local"
              then
               $RCP $user $i:$DIR1/
              fi
              # do the compilation on the other machine
              if test ${dirstatus[$counter]} = "shared"
              then
                hname=_$ibase
              else
                hname=
              fi
              remoteprog=$DIR1/${execname}$hname
              remoteuser=$DIR1/`$BASENAME $user`
              $RSH $i /bin/rm $remoteprog 2> /dev/null
              echo
              $RSH $i $DIR2/tools/comp_damask_lmp $DIR2 $DIR1 $remoteuser $remoteprog
              # check if successful, the new executable should be there
              line=`$RSH $i /bin/ls $remoteprog 2> /dev/null`
              if test "$line"
              then
                echo compilation and linking successful on host $i
              else
                echo "$0: compile failed for $user on host $i"
                exit 1
              fi
              # remove the user subroutine on remote machine
              if test ${dirstatus[$counter]} = "local"
              then
               $RSH $i /bin/rm $remoteuser 2> /dev/null
              fi
            fi
          fi
        done
      fi
    fi
    if test "$userhost"
    then
      echo
      echo "Compiling and linking user subroutine $user on host `hostname`"
    fi
    userobj=$usernoext.o
        if test $MACHINENAME = "CRAY"
        then
            $DFORTLOWMP $user || \
                {
                echo "$0: compile failed for $user"
                exit 1
                }
            /bin/rm $program 2>/dev/null
        else
            $DFORTLOWMP $user -o $userobj || \
                {
                echo "$0: compile failed for $user"
                exit 1
                }
            /bin/rm $program 2>/dev/null
        fi
  fi # if test $user


  $LOAD $bd${program} $MARC_LIB/main.o \
  $MARC_LIB/blkdta.o $MARC_LIB/comm?.o \
  ${userobj-} \
  $objs \
  $SRCLIB \
  $MNFLIBS \
  $MDUSER  \
  ${MUMPSSOLVERLIBS} \
  $MDSRCLIB \
  $MARC_LIB/mcvfit.a \
  $STUBS \
  ${SOLVERLIBS}  \
  ${MARCCUDALIBS}  \
  $TKLIBS  \
  $MRCLIBS     \
  $METISLIBS \
  $DAMASK \
  $SFLIB \
  $OPENSSL_LIB \
  $SYSLIBS \
  $SECLIBS         || \
  {
    echo "$0: link failed for ${user:+$userobj }$objs"
    exit 1
  }
  # copy user subroutine executable for hosts using local working dir
  if test $nprocd -gt 1
  then
    if test "$userhost"
    then
        counter=0
        for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
        do
          ibase=${i%%.*}
          if test $ibase != $thishost
          then
            counter=$((counter+1))
            if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
            then            
              DIR1=$DIRJOB
              line=`grep -v '^#' $userhost | grep "^$ibase "`
              workdir=`echo $line | $AWK '{print $3}'`
              if test -n "$workdir"
              then
                DIR1=$workdir
              fi
              echo "Copying executable to host ${i}"
              $RCP $program ${i}:${DIR1}/
            fi
          fi
        done
    fi
  fi
else # if test $link
	prgsav=yes
fi   # if test $link
/bin/rm $userobj 2>/dev/null
/bin/rm $DIRJOB/*.mod 2>/dev/null
/bin/rm $DIRJOB/*.smod 2>/dev/null
# done if no job id given
if test -z "$jid"
then
 echo
 echo only compilation requested
 echo
 exit
fi
#
# run marc
#
# Define share library path based on platforms
# This is required for using the Patran Mesher
if test $MACHINENAME = "IBM"
then
  LIBPATH=$MARC_LIB:$MARC_LIB_SHARED:$LIBPATH
  export LIBPATH
fi
# first remove all .out files
#  the ones for ddm are removed in the code
if test $nprocdddm -gt 1
then
  numdom=$nprocdddm
  while test $numdom -gt 0
  do
  /bin/rm $DIRJOB/$numdom$jid.out 2>/dev/null
  /bin/rm $DIRJOB/$numdom$jid.log 2>/dev/null
  numdom=`echo $numdom | $AWK   '{sum=$1-1}; {print sum}'`
  done
else
  /bin/rm $DIRJOB/$jid.out 2>/dev/null
fi

# for DDM with ARC support

if test $ddm_arc -gt 0; then
  RUN_JOB="$BINDIR/exeddm $RUN_JOB -ddm $ddm_arc "
fi

    $RUN_JOB 

if test $nprocd -gt 1
then
  if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
  then
    if test "$INTELMPI_VERSION" = "HYDRA"
    then
      if test "$host"
      then
        /bin/rm $jid.mfile  2> /dev/null
        /bin/rm $jid.hosts  2> /dev/null
        /bin/rm $jid.host   2> /dev/null
        /bin/rm $jid.cfile  2> /dev/null
      else
        echo " " > /dev/null
      fi
    else
      if test "$host"
      then
        mpdcleanup -a -f $jid.mfile
        /bin/rm $jid.host  2> /dev/null
        /bin/rm $jid.mfile  2> /dev/null
      else
        mpdcleanup -a -f $jid.hosts
        /bin/rm $jid.hosts 2> /dev/null
      fi
    fi
  fi
fi

if test $dllrun -eq 0; then
if test $prgsav = no
then
  /bin/rm -f $bd$program 2>/dev/null
  # for network run, remove executable on remote machines
  # and executables with modified name
  if test $nprocd -gt 1
  then
    if test "$userhost"
    then
      counter=0
      if test -f "$host_filt"
      then
      for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
      do
        ibase=${i%%.*}
        if test $ibase != $thishost
        then
          counter=$((counter+1))
          DIR1=$DIRJOB
          line=`grep -v '^#' $userhost | grep "^$ibase "`
          workdir=`echo $line | $AWK '{print $3}'`
          if test -n "$workdir"
          then
            DIR1=$workdir
          fi
          #  if an incompatible host uses shared directory,
          #  then the root machine deletes the executable
          if test ${dirstatus[$counter]} = "shared" -a  ${compstatus[$counter]} = "no"
          then
            hname=_$ibase
            /bin/rm ${execname}$hname
          fi
          # if local directory used, the remote machine
          # deletes the executable
          if test ${dirstatus[$counter]} = "local"
          then
            $RSH $i /bin/rm $DIR1/${execname} 2>/dev/null
          fi
        fi
      done
    fi
  fi
fi
fi
else
#dllrun >0
  if test $cpdll = yes; then
     filename=$usernoext
     /bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
  fi
  if test $rmdll = yes;then
     /bin/rm -f $DIRJOB/$marcdll 2>/dev/null	
  fi
fi

if test $nprocdddm -gt 1
then
  numdom=$nprocdddm
  while test $numdom -gt 0
  do
  /bin/rm $DIRSCR/$numdom$jid.t02 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t03 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t11 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t12 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t13 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t14 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t15 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t22 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t23 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t32 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t33 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t74 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t75 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t76 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t77 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t78 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t79 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t81* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t82* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.*.t83* 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t84 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t85 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t86 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t87 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t88 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.t90 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.sle 2>/dev/null
  /bin/rm $DIRSCR/$numdom$jid.sin 2>/dev/null
  numdom=`echo $numdom | $AWK  '{sum=$1-1}; {print sum}'`
  done
  /bin/rm $DIRJOB/$jid.pid 2>/dev/null
  if test $MPITYPE = "myrinet"
  then
   if test -f "$host_filt"
   then
    /bin/rm $host_filt
   fi
  fi
else
  /bin/rm $DIRSCR/$jid.t02 2>/dev/null
  /bin/rm $DIRSCR/$jid.t03 2>/dev/null
  /bin/rm $DIRSCR/$jid.t11 2>/dev/null
  /bin/rm $DIRSCR/$jid.t12 2>/dev/null
  /bin/rm $DIRSCR/$jid.t13 2>/dev/null
  /bin/rm $DIRSCR/$jid.t14 2>/dev/null
  /bin/rm $DIRSCR/$jid.t15 2>/dev/null
  /bin/rm $DIRSCR/$jid.t22 2>/dev/null
  /bin/rm $DIRSCR/$jid.t23 2>/dev/null
  /bin/rm $DIRSCR/$jid.t32 2>/dev/null
  /bin/rm $DIRSCR/$jid.t33 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t81* 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t82* 2>/dev/null
  /bin/rm $DIRSCR/$jid.*.t83* 2>/dev/null
  /bin/rm $DIRSCR/$jid.t84 2>/dev/null
  /bin/rm $DIRJOB/$jid.pid 2>/dev/null
  /bin/rm $DIRJOB/$jid.sle 2>/dev/null
  /bin/rm $DIRJOB/$jid.sin 2>/dev/null
fi


fi
fi