#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string,re,math,numpy from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP #-------------------------------------------------------------------------------------------------- class extendedOption(Option): #-------------------------------------------------------------------------------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) #-------------------------------------------------------------------------------------------------- # MAIN #-------------------------------------------------------------------------------------------------- identifiers = { 'grid': ['a','b','c'], 'size': ['x','y','z'], 'origin': ['x','y','z'], } mappings = { 'grid': lambda x: int(x), 'size': lambda x: float(x), 'origin': lambda x: float(x), 'homogenization': lambda x: int(x), 'microstructures': lambda x: int(x), } parser = OptionParser(option_class=extendedOption, usage='%prog options [file[s]]', description = """ compress geometry files with ranges "a to b" and/or multiples "n of x". """ + string.replace('$Id$','\n','\\n') ) (options, filenames) = parser.parse_args() #--- setup file handles --------------------------------------------------------------------------- files = [] if filenames == []: files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr, }) else: for name in filenames: if os.path.exists(name): files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stdout, }) #--- loop over input files ------------------------------------------------------------------------ for file in files: if file['name'] != 'STDIN': file['croak'].write(file['name']+'\n') firstline = file['input'].readline() m = re.search('(\d+)\s*head', firstline.lower()) if m: headerlines = int(m.group(1)) headers = [file['input'].readline() for i in range(headerlines)] else: headerlines = 1 headers = firstline content = file['input'].readlines() file['input'].close() #--- interprete header ---------------------------------------------------------------------------- info = { 'grid': numpy.zeros(3,'i'), 'size': numpy.zeros(3,'d'), 'origin': numpy.zeros(3,'d'), 'microstructures': 0, 'homogenization': 0, } new_header = [] for header in headers: headitems = map(str.lower,header.split()) if headitems[0] == 'resolution': headitems[0] = 'grid' if headitems[0] == 'dimension': headitems[0] = 'size' if headitems[0] in mappings.keys(): if headitems[0] in identifiers.keys(): for i in xrange(len(identifiers[headitems[0]])): info[headitems[0]][i] = \ mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1]) else: info[headitems[0]] = mappings[headitems[0]](headitems[1]) new_header.append(header) if numpy.all(info['grid'] == 0): file['croak'].write('no grid info found.\n') continue if numpy.all(info['size'] == 0.0): file['croak'].write('no size info found.\n') continue file['croak'].write('grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) + \ 'size x y z: %s\n'%(' x '.join(map(str,info['size']))) + \ 'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) + \ 'homogenization: %i\n'%info['homogenization'] + \ 'microstructures: %i\n'%info['microstructures']) file['output'].write('%i\theader\n'%(len(new_header))+''.join(new_header)) #--- pack input ----------------------------------------------------------------------------------- type = '' former = -1 start = -1 reps = 0 for line in content: for current in map(int,line.split()): if current == former+1 and start+reps == former+1: type = 'to' reps += 1 elif current == former and start == former: type = 'of' reps += 1 else: output = {'': '', '.': str(former)+'\n', 'to': '%i to %i\n'%(former-reps+1,former), 'of': '%i of %i\n'%(reps,former), }[type] file['output'].write(output) type = '.' start = current reps = 1 former = current output = {'.': str(former), 'to': '%i to %i'%(former-reps+1,former), 'of': '%i of %i'%(reps,former), }[type] file['output'].write(output+'\n') #--- output finalization -------------------------------------------------------------------------- if file['name'] != 'STDIN': file['output'].close() os.rename(file['name']+'_tmp',file['name'])