# sets up an environment for DAMASK on bash # usage: source DAMASK.sh function canonicalPath { python3 -c "import os,sys; print(os.path.normpath(os.path.realpath(os.path.expanduser(sys.argv[1]))))" $1 } function blink { echo -e "\033[2;5m$1\033[0m" } if [ "$OSTYPE" == "linux-gnu" ] || [ "$OSTYPE" == 'linux' ]; then ENV_ROOT=$(dirname $BASH_SOURCE) else [[ "${BASH_SOURCE::1}" == "/" ]] && BASE="" || BASE="$(pwd)/" STAT=$(stat "$(dirname $BASE$BASH_SOURCE)") ENV_ROOT=${STAT##* } fi DAMASK_ROOT=$(canonicalPath "$ENV_ROOT/../") # shorthand command to change to DAMASK_ROOT directory eval "function DAMASK_root() { cd $DAMASK_ROOT; }" # add BRANCH if DAMASK_ROOT is a git repository cd $DAMASK_ROOT >/dev/null; BRANCH=$(git branch 2>/dev/null| grep -E '^\* '); cd - >/dev/null PATH=${DAMASK_ROOT}/bin:$PATH SOLVER=$(type -p DAMASK_grid || true 2>/dev/null) [ "x$SOLVER" == "x" ] && SOLVER=$(blink 'Not found!') # currently, there is no information that unlimited stack size causes problems # still, http://software.intel.com/en-us/forums/topic/501500 suggest to fix it # more info https://jblevins.org/log/segfault # https://stackoverflow.com/questions/79923/what-and-where-are-the-stack-and-heap # http://superuser.com/questions/220059/what-parameters-has-ulimit ulimit -s unlimited 2>/dev/null # maximum stack size (kB) # disable output in case of scp if [ ! -z "$PS1" ]; then echo echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf echo https://damask.mpie.de echo echo Using environment with ... echo "DAMASK $DAMASK_ROOT $BRANCH" echo "Grid Solver $SOLVER" if [ "x$PETSC_DIR" != "x" ]; then echo -n "PETSc location " [ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR [[ $(canonicalPath "$PETSC_DIR") == $PETSC_DIR ]] \ || echo " ~~> "$(canonicalPath "$PETSC_DIR") fi [ "x$PETSC_ARCH" != "x" ] && echo "PETSc architecture $PETSC_ARCH" [ "x$OMP_NUM_THREADS" == "x" ] && export OMP_NUM_THREADS=4 echo "Multithreading OMP_NUM_THREADS=$OMP_NUM_THREADS" echo -n "heap size " [[ "$(ulimit -d)" == "unlimited" ]] \ && echo "unlimited" \ || echo $(python3 -c \ "import math; \ size=$(( 1024*$(ulimit -d) )); \ print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \ ['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))") echo -n "stack size " [[ "$(ulimit -s)" == "unlimited" ]] \ && echo "unlimited" \ || echo $(python3 -c \ "import math; \ size=$(( 1024*$(ulimit -s) )); \ print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \ ['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))") echo fi export DAMASK_ROOT export PYTHONPATH=$DAMASK_ROOT/python:$PYTHONPATH for var in BASE STAT SOLVER BRANCH; do unset "${var}" done unset "ENV_ROOT"