# -*- coding: UTF-8 no BOM -*- # $Id$ import os, sys, shlex, inspect import subprocess,shutil,string import logging, logging.config import damask from optparse import OptionParser class Test(): ''' General class for testing. Is sub-classed by the individual tests. ''' variants = [] def __init__(self,test_description): logger = logging.getLogger() logger.setLevel(0) fh = logging.FileHandler('test.log') # create file handler which logs even debug messages fh.setLevel(logging.DEBUG) full = logging.Formatter('%(asctime)s - %(levelname)s: \n%(message)s') fh.setFormatter(full) ch = logging.StreamHandler(stream=sys.stdout) # create console handler with a higher log level ch.setLevel(logging.INFO) # create formatter and add it to the handlers plain = logging.Formatter('%(message)s') ch.setFormatter(plain) # add the handlers to the logger logger.addHandler(fh) logger.addHandler(ch) logging.info('!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n' \ +'----------------------------------------------------------------\n' \ +'| '+test_description+'\n' \ +'----------------------------------------------------------------') self.dirBase = os.path.dirname(os.path.realpath(sys.modules[self.__class__.__module__].__file__)) self.parser = OptionParser( description = test_description+' (using class: $Id run_test.py 1285 2012-02-09 08:54:09Z MPIE\m.diehl $)', usage='./test.py [options]') self.updateRequested = False def execute(self): ''' Run all variants and report first failure. ''' if not self.testPossible(): return -1 self.clean() self.prepareAll() for variant in xrange(len(self.variants)): try: self.prepare(variant) self.run(variant) self.postprocess(variant) if self.updateRequested: # update requested self.update(variant) elif not self.compare(variant): # no update, do comparison return variant+1 # return culprit except Exception as e : logging.critical('\nWARNING:\n %s\n'%e) return variant+1 # return culprit return 0 def testPossible(self): ''' Check if test is possible or not (e.g. no license available). ''' return True def clean(self): ''' Delete directory tree containing current results. ''' status = True try: shutil.rmtree(self.dirCurrent()) except: logging.warning('removal of directory "%s" not possible...'%(self.dirCurrent())) status = status and False try: os.mkdir(self.dirCurrent()) except: logging.critical('creation of directory "%s" failed...'%(self.dirCurrent())) status = status and False return status def prepareAll(self): ''' Do all necessary preparations for the whole test ''' return True def prepare(self,variant): ''' Do all necessary preparations for the run of each test variant ''' return True def run(self,variant): ''' Execute the requested test variant. ''' return True def postprocess(self,variant): ''' Perform post-processing of generated results for this test variant. ''' return True def compare(self,variant): ''' Compare reference to current results. ''' return True def update(self,variant): ''' Update reference with current results. ''' logging.debug('Update not necessary') return True def dirReference(self): ''' Directory containing reference results of the test. ''' return os.path.normpath(os.path.join(self.dirBase,'reference/')) def dirCurrent(self): ''' Directory containing current results of the test. ''' return os.path.normpath(os.path.join(self.dirBase,'current/')) def dirProof(self): ''' Directory containing human readable proof of correctness for the test. ''' return os.path.normpath(os.path.join(self.dirBase,'proof/')) def fileInReference(self,file): ''' Path to a file in the refrence directory for the test. ''' return os.path.join(self.dirReference(),file) def fileInCurrent(self,file): ''' Path to a file in the current results directory for the test. ''' return os.path.join(self.dirCurrent(),file) def fileInProof(self,file): ''' Path to a file in the proof directory for the test. ''' return os.path.join(self.dirProof(),file) def copy_Reference2Current(self,sourcefiles=[],targetfiles=[]): if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInReference(file),self.fileInCurrent(targetfiles[i])) except: logging.critical('Reference2Current: Unable to copy file %s'%file) def copy_Base2Current(self,sourceDir,sourcefiles=[],targetfiles=[]): source=os.path.normpath(os.path.join(self.dirBase,'../../'+sourceDir)) if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(os.path.join(source,file),self.fileInCurrent(targetfiles[i])) except: logging.error(os.path.join(source,file)) logging.critical('Base2Current: Unable to copy file %s'%file) def copy_Current2Reference(self,sourcefiles=[],targetfiles=[]): if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInCurrent(file),self.fileInReference(targetfiles[i])) except: logging.critical('Current2Reference: Unable to copy file %s'%file) def copy_Proof2Current(self,sourcefiles=[],targetfiles=[]): if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInProof(file),self.fileInCurrent(targetfiles[i])) except: logging.critical('Proof2Current: Unable to copy file %s'%file) def copy_Current2Current(self,sourcefiles=[],targetfiles=[]): for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInReference(file),self.fileInCurrent(targetfiles[i])) except: logging.critical('Current2Current: Unable to copy file %s'%file) def execute_inCurrentDir(self,cmd,streamIn=None): logging.info(cmd) out,error = damask.util.execute(cmd,streamIn,self.dirCurrent()) logging.info(error) logging.debug(out) return out,error def compare_Array(self,File1,File2): import numpy as np logging.info('comparing\n '+File1+'\n '+File2) table1 = damask.ASCIItable(File1,readonly=True) table1.head_read() len1=len(table1.info)+2 table2 = damask.ASCIItable(File2,readonly=True) table2.head_read() len2=len(table2.info)+2 refArray = np.nan_to_num(np.genfromtxt(File1,missing_values='n/a',skip_header = len1,autostrip=True)) curArray = np.nan_to_num(np.genfromtxt(File2,missing_values='n/a',skip_header = len2,autostrip=True)) if len(curArray) == len(refArray): refArrayNonZero = refArray[refArray.nonzero()] curArray = curArray[refArray.nonzero()] max_err=np.max(abs(refArrayNonZero[curArray.nonzero()]/curArray[curArray.nonzero()]-1.)) max_loc=np.argmax(abs(refArrayNonZero[curArray.nonzero()]/curArray[curArray.nonzero()]-1.)) refArrayNonZero = refArrayNonZero[curArray.nonzero()] curArray = curArray[curArray.nonzero()] print(' ********\n * maximum relative error %e for %e and %e\n ********' %(max_err, refArrayNonZero[max_loc],curArray[max_loc])) return max_err else: raise Exception('mismatch in array size to compare') def compare_ArrayRefCur(self,ref,cur=''): if cur =='': cur = ref refName = self.fileInReference(ref) curName = self.fileInCurrent(cur) return self.compare_Array(refName,curName) def compare_ArrayCurCur(self,cur0,cur1): cur0Name = self.fileInCurrent(cur0) cur1Name = self.fileInCurrent(cur1) return self.compare_Array(cur0Name,cur1Name) def compare_Table(self,headings0,file0,headings1,file1,normHeadings='',normType=None,\ absoluteTolerance=False,perLine=False,skipLines=[]): import numpy as np logging.info('comparing ASCII Tables\n %s \n %s'%(file0,file1)) if normHeadings == '': normHeadings = headings0 if len(headings0) == len(headings1) == len(normHeadings): #check if comparison is possible and determine lenght of columns dataLength = len(headings0) length = [1 for i in xrange(dataLength)] shape = [[] for i in xrange(dataLength)] data = [[] for i in xrange(dataLength)] maxError = [0.0 for i in xrange(dataLength)] absTol = [absoluteTolerance for i in xrange(dataLength)] column = [[1 for i in xrange(dataLength)] for j in xrange(2)] norm = [[] for i in xrange(dataLength)] normLength = [1 for i in xrange(dataLength)] normShape = [[] for i in xrange(dataLength)] normColumn = [1 for i in xrange(dataLength)] for i in xrange(dataLength): if headings0[i]['shape'] != headings1[i]['shape']: raise Exception('shape mismatch when comparing %s with %s '%(headings0[i]['label'],headings1[i]['label'])) shape[i] = headings0[i]['shape'] for j in xrange(np.shape(shape[i])[0]): length[i] *= shape[i][j] normShape[i] = normHeadings[i]['shape'] for j in xrange(np.shape(normShape[i])[0]): normLength[i] *= normShape[i][j] else: raise Exception('trying to compare %i with %i normed by %i data sets'%(len(headings0),len(headings1),len(normHeadings))) table0 = damask.ASCIItable(file0,readonly=True) table0.head_read() table1 = damask.ASCIItable(file1,readonly=True) table1.head_read() for i in xrange(dataLength): key0 = {True :'1_%s', False:'%s' }[length[i]>1]%headings0[i]['label'] key1 = {True :'1_%s', False:'%s' }[length[i]>1]%headings1[i]['label'] normKey = {True :'1_%s', False:'%s' }[normLength[i]>1]%normHeadings[i]['label'] if key0 not in table0.labels: raise Exception('column %s not found in 1. table...\n'%key0) elif key1 not in table1.labels: raise Exception('column %s not found in 2. table...\n'%key1) elif normKey not in table0.labels: raise Exception('column %s not found in 1. table...\n'%normKey) else: column[0][i] = table0.labels.index(key0) # remember columns of requested data column[1][i] = table1.labels.index(key1) # remember columns of requested data in second column normColumn[i] = table0.labels.index(normKey) # remember columns of requested data in second column line0 = 0 while table0.data_read(): # read next data line of ASCII table if line0 not in skipLines: for i in xrange(dataLength): myData = np.array(map(float,table0.data[column[0][i]:\ column[0][i]+length[i]]),'d') normData = np.array(map(float,table0.data[normColumn[i]:\ normColumn[i]+normLength[i]]),'d') data[i] = np.append(data[i],np.reshape(myData,shape[i])) if normType == 'pInf': norm[i] = np.append(norm[i],np.max(np.abs(normData))) else: norm[i] = np.append(norm[i],np.linalg.norm(np.reshape(normData,normShape[i]),normType)) line0 +=1 for i in xrange(dataLength): if not perLine: norm[i] = [np.max(norm[i]) for j in xrange(line0-len(skipLines))] data[i] = np.reshape(data[i],[line0-len(skipLines),length[i]]) if any(norm[i]) == 0.0 or absTol[i]: norm[i] = [1.0 for j in xrange(line0-len(skipLines))] absTol[i] = True if perLine: logging.warning('At least one norm of %s in 1. table is 0.0, using absolute tolerance'%headings0[i]['label']) else: logging.warning('Maximum norm of %s in 1. table is 0.0, using absolute tolerance'%headings0[i]['label']) line1 = 0 while table1.data_read(): # read next data line of ASCII table if line1 not in skipLines: for i in xrange(dataLength): myData = np.array(map(float,table1.data[column[1][i]:\ column[1][i]+length[i]]),'d') maxError[i] = max(maxError[i],np.linalg.norm(np.reshape(myData-data[i][line1-len(skipLines),:],shape[i]))/ norm[i][line1-len(skipLines)]) line1 +=1 if (line0 != line1): raise Exception('found %s lines in 1. table and %s in 2. table'%(line0,line1)) logging.info(' ********') for i in xrange(dataLength): if absTol[i]: logging.info(' * maximum absolute error %e for %s and %s'%(maxError[i],headings0[i]['label'],headings1[i]['label'])) else: logging.info(' * maximum relative error %e for %s and %s'%(maxError[i],headings0[i]['label'],headings1[i]['label'])) logging.info(' ********') return maxError def compare_Table2(self,file0,file1,headings0=None,headings1=None,rtol=1e-5,atol=1e-8): import numpy as np logging.info('comparing ASCII Tables\n %s \n %s'%(file0,file1)) if headings1 == None: headings1=headings0 table0 = damask.ASCIItable(file0,readonly=True) table0.head_read() table0.data_readArray(headings0) table1 = damask.ASCIItable(file1,readonly=True) table1.head_read() table1.data_readArray(headings1) return np.allclose(table0.data,table1.data,rtol,atol) def compare_TableRefCur(self,headingsRef,ref,headingsCur='',cur='',normHeadings='',normType=None,\ absoluteTolerance=False,perLine=False,skipLines=[]): if cur == '': cur = ref if headingsCur == '': headingsCur = headingsRef refName = self.fileInReference(ref) curName = self.fileInCurrent(cur) return self.compare_Table(headingsRef,refName,headingsCur,curName,normHeadings,normType, absoluteTolerance,perLine,skipLines) def compare_TableCurCur(self,headingsCur0,Cur0,Cur1,headingsCur1='',normHeadings='',normType=None,\ absoluteTolerance=False,perLine=False,skipLines=[]): if headingsCur1 == '': headingsCur1 = headingsCur0 cur0Name = self.fileInCurrent(Cur0) cur1Name = self.fileInCurrent(Cur1) return self.compare_Table(headingsCur0,cur0Name,headingsCur1,cur1Name,normHeadings,normType, absoluteTolerance,perLine,skipLines) def report_Success(self,culprit): if culprit == 0: logging.critical('%s passed.'%({False: 'The test', True: 'All %i tests'%(len(self.variants))}[len(self.variants) > 1])) logging.critical('\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n') return 0 if culprit == -1: logging.warning('Warning: Could not start test') return 0 else: logging.critical(' ********\n * Test %i failed...\n ********'%(culprit)) logging.critical('\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n') return culprit