#!/usr/bin/env python # $Id$ import os, sys, shlex import subprocess,shutil,string import damask from optparse import OptionParser class Test(): ''' General class for testing. Is sub-classed by the individual tests. ''' variants = [] def __init__(self,test_description): print '!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\n' \ +'----------------------------------------------------------------\n' \ +'| '+test_description+'\n' \ +'----------------------------------------------------------------' self.dirBase = os.path.dirname(os.path.realpath(sys.argv[0])) self.parser = OptionParser( description = 'Using: $Id run_test.py 1285 2012-02-09 08:54:09Z MPIE\m.diehl $', usage='run_test.py [options]') self.parser.add_option("-u", "--update", action="store_true",\ dest="update",\ help="use current test results as new reference") self.parser.set_defaults(update = False) (self.options, self.args) = self.parser.parse_args() def execute(self,variants = [],update = []): ''' Run all variants and report first failure. ''' if len(update) == 0 and self.options.update: print ' This test has no reference to update' if len(variants) == 0: variants = xrange(len(self.variants)) # iterate over all variants self.clean() self.prepareAll() for variant in variants: try: self.prepare(variant) self.run(variant) self.postprocess(variant) if variant in update: self.update(variant) elif not self.compare(variant): return variant except Exception,e : print '\nWARNING:\n %s\n'%e return variant return -1 def clean(self): ''' Delete directory tree containing current results. ''' status = True try: shutil.rmtree(self.dirCurrent()) except: print('removal of directory "%s" not possible...'%(self.dirCurrent())) status = status and False try: os.mkdir(self.dirCurrent()) except: print('creation of directory "%s" failed...'%(self.dirCurrent())) status = status and False return status def prepareAll(self): ''' Do all necessary preparations for the whole test ''' return True def prepare(self,variant): ''' Do all necessary preparations for the run of each test variant ''' return True def run(self,variant): ''' Execute the requested test variant. ''' return True def postprocess(self,variant): ''' Perform post-processing of generated results for this test variant. ''' return True def compare(self,variant): ''' Compare reference to current results. ''' return True def update(self,variant): ''' Update reference with current results. ''' return True def dirReference(self): ''' ''' return os.path.normpath(os.path.join(self.dirBase,'reference/')) def dirCurrent(self): ''' ''' return os.path.normpath(os.path.join(self.dirBase,'current/')) def dirProof(self): ''' ''' return os.path.normpath(os.path.join(self.dirBase,'proof/')) def fileInReference(self,file): ''' ''' return os.path.join(self.dirReference(),file) def fileInCurrent(self,file): ''' ''' return os.path.join(self.dirCurrent(),file) def fileInProof(self,file): ''' ''' return os.path.join(self.dirProof(),file) def copy_Reference2Current(self,sourcefiles=[],targetfiles=[]): if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInReference(file),self.fileInCurrent(targetfiles[i])) except: print 'Reference2Current: Unable to copy file ', file def copy_Current2Reference(self,sourcefiles=[],targetfiles=[]): if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInCurrent(file),self.fileInReference(targetfiles[i])) except: print 'Current2Reference: Unable to copy file ', file def copy_Proof2Current(self,sourcefiles=[],targetfiles=[]): if len(targetfiles) == 0: targetfiles = sourcefiles for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInProof(file),self.fileInCurrent(targetfiles[i])) except: print 'Proof2Current: Unable to copy file ', file def copy_Current2Current(self,sourcefiles=[],targetfiles=[]): for i,file in enumerate(sourcefiles): try: shutil.copy2(self.fileInReference(file),self.fileInCurrent(targetfiles[i])) except: print 'Current2Current: Unable to copy file ', file def execute_inCurrentDir(self,cmd,outfile='execute_log.txt'): os.chdir(self.dirCurrent()) file=open(outfile,'a+') print cmd process = subprocess.Popen(shlex.split(cmd),stdout = file,stderr = subprocess.STDOUT) process.wait() file.close() def compare_Array(self,File1,File2): import numpy print 'comparing\n ' , File1,'\n ', File2 refFile = open(File1) table = damask.ASCIItable(refFile) table.head_read() refFile.close() refArray = numpy.nan_to_num(numpy.genfromtxt(File1,missing_values='n/a',skip_header = len(table.info)+1,autostrip=True)) curArray = numpy.nan_to_num(numpy.genfromtxt(File2,missing_values='n/a',skip_header = len(table.info)+1,autostrip=True)) if len(curArray) == len(refArray): refArrayNonZero = refArray[refArray.nonzero()] curArray = curArray[refArray.nonzero()] max_err=numpy.max(abs(refArrayNonZero[curArray.nonzero()]/curArray[curArray.nonzero()]-1.)) max_loc=numpy.argmax(abs(refArrayNonZero[curArray.nonzero()]/curArray[curArray.nonzero()]-1.)) refArrayNonZero = refArrayNonZero[curArray.nonzero()] curArray = curArray[curArray.nonzero()] print ' ********\n * maximum relative error ',max_err,' for ', refArrayNonZero[max_loc],' and ',curArray[max_loc],'\n ********' return max_err else: raise Exception('mismatch in array size to compare') def compare_ArrayRefCur(self,ref,cur=''): if cur =='': cur = ref refName = self.fileInReference(ref) curName = self.fileInCurrent(cur) return self.compare_Array(refName,curName) def compare_ArrayCurCur(self,cur0,cur1): cur0Name = self.fileInCurrent(cur0) cur1Name = self.fileInCurrent(cur1) return self.compare_Array(cur0Name,cur1Name) def compare_Table(self,headings0,file0,headings1,file1,normHeadings='',normType=None,\ absoluteTolerance=False,perLine=False,skipLines=[]): import numpy print 'comparing ASCII Tables\n' , file0,'\n', file1 if normHeadings == '': normHeadings = headings0 if len(headings0) == len(headings1) == len(normHeadings): #check if comparison is possible and determine lenght of columns dataLength = len(headings0) length = [1 for i in xrange(dataLength)] shape = [[] for i in xrange(dataLength)] data = [[] for i in xrange(dataLength)] maxError = [0.0 for i in xrange(dataLength)] absTol = [absoluteTolerance for i in xrange(dataLength)] column = [[1 for i in xrange(dataLength)] for j in xrange(2)] norm = [[] for i in xrange(dataLength)] normLength = [1 for i in xrange(dataLength)] normShape = [[] for i in xrange(dataLength)] normColumn = [1 for i in xrange(dataLength)] for i in xrange(dataLength): if headings0[i]['shape'] != headings1[i]['shape']: raise Exception('shape mismatch when comparing ', headings0[i]['label'], ' with ', headings1[i]['label']) shape[i] = headings0[i]['shape'] for j in xrange(numpy.shape(shape[i])[0]): length[i] *= shape[i][j] normShape[i] = normHeadings[i]['shape'] for j in xrange(numpy.shape(normShape[i])[0]): normLength[i] *= normShape[i][j] else: raise Exception('trying to compare ', len(headings0), ' with ', len(headings1), ' normed by ', len(normHeadings),' data sets') table0 = damask.ASCIItable(open(file0)) table0.head_read() table1 = damask.ASCIItable(open(file1)) table1.head_read() for i in xrange(dataLength): key0 = {True :'1_%s', False:'%s' }[length[i]>1]%headings0[i]['label'] key1 = {True :'1_%s', False:'%s' }[length[i]>1]%headings1[i]['label'] normKey = {True :'1_%s', False:'%s' }[normLength[i]>1]%normHeadings[i]['label'] if key0 not in table0.labels: raise Exception('column %s not found in 1. table...\n'%key0) elif key1 not in table1.labels: raise Exception('column %s not found in 2. table...\n'%key1) elif normKey not in table0.labels: raise Exception('column %s not found in 1. table...\n'%normKey) else: column[0][i] = table0.labels.index(key0) # remember columns of requested data column[1][i] = table1.labels.index(key1) # remember columns of requested data in second column normColumn[i] = table0.labels.index(normKey) # remember columns of requested data in second column line0 = 0 while table0.data_read(): # read next data line of ASCII table if line0 not in skipLines: for i in xrange(dataLength): myData = numpy.array(map(float,table0.data[column[0][i]:\ column[0][i]+length[i]]),'d') normData = numpy.array(map(float,table0.data[normColumn[i]:\ normColumn[i]+normLength[i]]),'d') data[i] = numpy.append(data[i],numpy.reshape(myData,shape[i])) if normType == 'pInf': norm[i] = numpy.append(norm[i],numpy.max(numpy.abs(normData))) else: norm[i] = numpy.append(norm[i],numpy.linalg.norm(numpy.reshape(normData,normShape[i]),normType)) line0 +=1 for i in xrange(dataLength): if not perLine: norm[i] = [numpy.max(norm[i]) for j in xrange(line0-len(skipLines))] data[i] = numpy.reshape(data[i],[line0-len(skipLines),length[i]]) if any(norm[i]) == 0.0 or absTol[i]: norm[i] = [1.0 for j in xrange(line0-len(skipLines))] absTol[i] = True if perLine: print 'At least one norm of',headings0[i]['label'],'in 1. table is 0.0, using absolute tolerance' else: print 'Maximum norm of',headings0[i]['label'],'in 1. table is 0.0, using absolute tolerance' line1 = 0 while table1.data_read(): # read next data line of ASCII table if line1 not in skipLines: for i in xrange(dataLength): myData = numpy.array(map(float,table1.data[column[1][i]:\ column[1][i]+length[i]]),'d') maxError[i] = max(maxError[i],numpy.linalg.norm(numpy.reshape(myData-data[i][line1-len(skipLines),:],shape[i]))/norm[i][line1-len(skipLines)]) line1 +=1 if (line0 != line1): raise Exception('found ', line0, ' lines in 1. table and ', line1, ' in 2. table') print ' ********' for i in xrange(dataLength): if absTol[i]: print ' * maximum absolute error ',maxError[i],' for ', headings0[i]['label'],' and ',headings1[i]['label'] else: print ' * maximum relative error ',maxError[i],' for ', headings0[i]['label'],' and ',headings1[i]['label'] print ' ********' return maxError def compare_TableRefCur(self,headingsRef,ref,headingsCur='',cur='',normHeadings='',normType=None,\ absoluteTolerance=False,perLine=False,skipLines=[]): if cur == '': cur = ref if headingsCur == '': headingsCur = headingsRef refName = self.fileInReference(ref) curName = self.fileInCurrent(cur) return self.compare_Table(headingsRef,refName,headingsCur,curName,normHeadings,normType,absoluteTolerance,perLine,skipLine) def report_Success(self,culprit): if culprit < 0: print '%s passed.'%({False: 'The test', True: 'All %i tests'%(len(self.variants))}[len(self.variants) > 1]) else: print ' ********\n * Test %i failed...\n ********'%(culprit+1) print '\n!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n'