#!/usr/bin/env python2.7 # -*- coding: UTF-8 no BOM -*- import os,sys,vtk import numpy as np import damask from optparse import OptionParser scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Create regular voxel grid from points in an ASCIItable. """, version = scriptID) parser.add_option('-m', '--mode', dest = 'mode', metavar='string', type = 'choice', choices = ['cell','point'], help = 'cell-centered or point-centered coordinates') parser.add_option('-p', '--pos', '--position', dest = 'pos', type = 'string', metavar = 'string', help = 'label of coordinates [%default]') parser.set_defaults(mode = 'cell', pos = 'pos', ) (options, filenames) = parser.parse_args() # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False, labeled = True, readonly = True, ) except: continue damask.util.report(scriptName,name) # --- interpret header ---------------------------------------------------------------------------- table.head_read() remarks = [] errors = [] coordDim = table.label_dimension(options.pos) if not 3 >= coordDim >= 1: errors.append('coordinates "{}" need to have one, two, or three dimensions.'.format(options.pos)) elif coordDim < 3: remarks.append('appending {} dimension{} to coordinates "{}"...'.format(3-coordDim, 's' if coordDim < 2 else '', options.pos)) if remarks != []: damask.util.croak(remarks) if errors != []: damask.util.croak(errors) table.close(dismiss=True) continue # --------------- figure out size and grid --------------------------------------------------------- table.data_readArray(options.pos) if len(table.data.shape) < 2: table.data.shape += (1,) # expand to 2D shape if table.data.shape[1] < 3: table.data = np.hstack((table.data, np.zeros((table.data.shape[0], 3-table.data.shape[1]),dtype='f'))) # fill coords up to 3D with zeros coords = [np.unique(table.data[:,i]) for i in xrange(3)] if options.mode == 'cell': coords = [0.5 * np.array([3.0 * coords[i][0] - coords[i][0 + len(coords[i]) > 1]] + \ [coords[i][j-1] + coords[i][j] for j in xrange(1,len(coords[i]))] + \ [3.0 * coords[i][-1] - coords[i][-1 - (len(coords[i]) > 1)]]) for i in xrange(3)] grid = np.array(map(len,coords),'i') N = grid.prod() if options.mode == 'point' else (grid-1).prod() if N != len(table.data): errors.append('data count {} does not match grid {}x{}x{}.'.format(N,*(grid - (options.mode == 'cell')) )) if errors != []: damask.util.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ process data --------------------------------------- rGrid = vtk.vtkRectilinearGrid() coordArray = [vtk.vtkDoubleArray(), vtk.vtkDoubleArray(), vtk.vtkDoubleArray(), ] rGrid.SetDimensions(*grid) for i,points in enumerate(coords): for point in points: coordArray[i].InsertNextValue(point) rGrid.SetXCoordinates(coordArray[0]) rGrid.SetYCoordinates(coordArray[1]) rGrid.SetZCoordinates(coordArray[2]) # ------------------------------------------ output result --------------------------------------- if name: writer = vtk.vtkXMLRectilinearGridWriter() writer.SetCompressorTypeToZLib() writer.SetDataModeToBinary() writer.SetFileName(os.path.join(os.path.split(name)[0], os.path.splitext(os.path.split(name)[1])[0] + '_{}({})'.format(options.pos, options.mode) + '.' + writer.GetDefaultFileExtension())) else: writer = vtk.vtkDataSetWriter() writer.SetHeader('# powered by '+scriptID) writer.WriteToOutputStringOn() if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid) else: writer.SetInputData(rGrid) writer.Write() if name is None: sys.stdout.write(writer.GetOutputString()[:writer.GetOutputStringLength()]) # limiting of outputString is fix for vtk <7.0 table.close()