#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string,re,vtk import numpy as np from optparse import OptionParser import damask scriptID = '$Id$' scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Create regular voxel grid from points in an ASCIItable. """, version = scriptID) parser.add_option('-m', '--mode', dest = 'mode', type = 'choice', choices = ['cell','point'], help = 'cell-centered or point-centered coordinates ') parser.add_option('-p', '--positions', dest = 'position', type = 'string', metavar = 'string', help = 'coordinate label [%default]') parser.set_defaults(position = 'pos', ) (options, filenames) = parser.parse_args() if not options.mode: parser.error("No coordinate type specified.") # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, buffered = False, readonly = True) except: continue table.croak(damask.util.emph(scriptName)+(': '+name if name else '')) # --- interpret header ---------------------------------------------------------------------------- table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- errors = [] remarks = [] if table.label_dimension(options.position) != 3: errors.append('coordinates {} are not a vector.'.format(options.position)) if remarks != []: table.croak(remarks) if errors != []: table.croak(errors) table.close(dismiss = True) continue # --------------- figure out size and grid --------------------------------------------------------- table.data_readArray(options.position) coords = [np.unique(table.data[:,i]) for i in xrange(3)] if options.mode == 'cell': coords = [0.5 * np.array([3.0 * coords[i][0] - coords[i][0 + len(coords[i]) > 1]] + \ [coords[i][j-1] + coords[i][j] for j in xrange(1,len(coords[i]))] + \ [3.0 * coords[i][-1] - coords[i][-1 - (len(coords[i]) > 1)]]) for i in xrange(3)] grid = np.array(map(len,coords),'i') N = grid.prod() if options.mode == 'point' else (grid-1).prod() if N != len(table.data): errors.append('data count {} does not match grid {}x{}x{}.'.format(N,*(grid - options.mode == 'cell') )) if errors != []: table.croak(errors) table.close(dismiss = True) continue # ------------------------------------------ process data --------------------------------------- rGrid = vtk.vtkRectilinearGrid() coordArray = [vtk.vtkDoubleArray(), vtk.vtkDoubleArray(), vtk.vtkDoubleArray(), ] rGrid.SetDimensions(*grid) for i,points in enumerate(coords): for point in points: coordArray[i].InsertNextValue(point) rGrid.SetXCoordinates(coordArray[0]) rGrid.SetYCoordinates(coordArray[1]) rGrid.SetZCoordinates(coordArray[2]) table.croak('{} points and {} cells...'.format(rGrid.GetNumberOfPoints(),rGrid.GetNumberOfCells(),)) # ------------------------------------------ output result --------------------------------------- if name: (dir,filename) = os.path.split(name) writer = vtk.vtkXMLRectilinearGridWriter() writer.SetDataModeToBinary() writer.SetCompressorTypeToZLib() writer.SetFileName(os.path.join(dir,os.path.splitext(filename)[0]+'_{}'.format(options.position) \ +'.'+writer.GetDefaultFileExtension())) if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid) else: writer.SetInputData(rGrid) writer.Write() else: writer = vtk.vtkRectilinearGridWriter() writer.WriteToOutputStringOn() writer.SetFileTypeToASCII() writer.SetHeader('# powered by '+scriptID) if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid) else: writer.SetInputData(rGrid) writer.Write() sys.stdout.write(writer.GetOutputString()[0:writer.GetOutputStringLength()]) table.close() # close input ASCII table