#!/usr/bin/env python # Makes postprocessing routines acessible from everywhere. import os,sys,glob,string from optparse import OptionParser, Option import damask_tools # ----------------------------- class extendableOption(Option): # ----------------------------- # used for definition of new option parser action 'extend', which enables to take multiple option arguments # taken from online tutorial http://docs.python.org/library/optparse.html ACTIONS = Option.ACTIONS + ("extend",) STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) def take_action(self, action, dest, opt, value, values, parser): if action == "extend": lvalue = value.split(",") values.ensure_value(dest, []).extend(lvalue) else: Option.take_action(self, action, dest, opt, value, values, parser) ######################################################## # MAIN ######################################################## parser = OptionParser(option_class=extendableOption, usage='%prog options', description = """ Sets up the pre and post processing tools of DAMASK """ + string.replace('$Id: addDivergence.py 1129 2011-12-01 12:01:13Z MPIE\m.diehl $','\n','\\n') ) parser.add_option('--F90', dest='compiler', type='string', \ help='name of F90 compiler [%default]') parser.set_defaults(compiler = 'ifort') (options,filenames) = parser.parse_args() #translating name of compiler for use with f2py and setting subdirname of acml if options.compiler == 'gfortran': f2py_compiler='gnu95 --f90flags="-fno-range-check"' else: f2py_compiler='intelem' acml_subdir='%s64/lib'%options.compiler #getting pathinfo damask_variables = damask_tools.DAMASK_TOOLS() baseDir = damask_variables.relPath('processing/') codeDir = damask_variables.relPath('code/') #define ToDo list bin_link = { \ 'pre' : [ 'marc_addUserOutput.py', 'mentat_pbcOnBoxMesh.py', 'mentat_spectralBox.py', 'patchFromReconstructedBoundaries.py', 'spectral_geomCheck.py', 'spectral_minimalSurface.py', 'spectral_vicinityOffset.py', 'voronoi_randomSeeding.exe', 'voronoi_tessellation.exe', ], 'post' : [ '3Dvisualize.py', 'addCauchy.py', 'addCalculation.py', 'addDeterminant.py', 'addDivergence.py', 'addMises.py', 'addNorm.py', 'addStrainTensors.py', 'addCompatibilityMismatch.py', 'averageDown.py', 'mentat_colorMap.py', 'postResults.py', 'spectral_iterationCount.py', 'spectral_convergence.py', 'spectral_scaleGeom.py', ], } compile = { \ 'pre' : [ 'voronoi_randomSeeding.f90', 'voronoi_tessellation.f90', ], 'post' : [ ], } execute = { \ 'postMath' : [ 'rm %s'%(os.path.join(damask_variables.relPath('lib/'),'DAMASK.so')), # The following command is used to compile math.f90 and make the functions defined in DAMASK_math.pyf # available for python in the module DAMASK_math.so # It uses the fortran wrapper f2py that is included in the numpy package to construct the # module postprocessingMath.so out of the fortran code postprocessingMath.f90 # for the generation of the pyf file: #f2py -m DAMASK -h DAMASK.pyf --overwrite-signature ../../code/math.f90 \ 'f2py %s '%(os.path.join(codeDir,'DAMASK.pyf')) +\ '-c --fcompiler=%s '%(f2py_compiler) +\ '%s ' %(os.path.join(codeDir,'DAMASK2Python_helper.f90'))+\ '%s ' %(os.path.join(codeDir,'math.f90'))+\ '%s ' %(os.path.join(damask_variables.pathInfo['fftw'],'libfftw3.a'))+\ '%s' %(os.path.join(damask_variables.pathInfo['acml'],acml_subdir,'libacml.a'), 'mv %s %s' %(os.path.join(codeDir,'DAMASK.so'),damask_variables.relPath('lib/')), ] } for dir in compile: for file in compile[dir]: src = os.path.abspath(os.path.join(baseDir,dir,file)) if os.path.isfile(src): try: os.system('rm %s.exe'%(os.path.splitext(src)[0])) print 'removing %s.exe '%(os.path.splitext(src)[0]) except: pass print 'compiling ',src,'using',options.compiler os.system('%s -O2 -o%s.exe %s'%(options.compiler,os.path.splitext(src)[0],src)) os.chdir(codeDir) # needed for compilation with gfortran and f2py for tasks in execute: for cmd in execute[tasks]: os.system(cmd) os.chdir(damask_variables.relPath('processing/setup/')) modules = glob.glob('*.mod') for module in modules: print 'removing', module os.remove(module) for dir in bin_link: for file in bin_link[dir]: src = os.path.abspath(os.path.join(baseDir,dir,file)) if (file == ''): sym_link = os.path.abspath(os.path.join(damask_variables.binDir(),dir)) else: sym_link = os.path.abspath(os.path.join(damask_variables.binDir(),os.path.splitext(file)[0])) print sym_link,'-->',src if os.path.lexists(sym_link): os.remove(sym_link) os.symlink(src,sym_link) #--- uncomment next lines to remove your old symbolic links in ~/bin #old_link=sym_link.replace(damask_root,os.getenv('HOME')) #if os.path.lexists(old_link): # os.remove(old_link)