import pytest import numpy as np import vtk from damask import VTK from damask import Grid from damask import Table from damask import Rotation from damask import Colormap from damask import util from damask import seeds from damask import grid_filters def grid_equal(a,b): return np.all(a.material == b.material) and \ np.all(a.cells == b.cells) and \ np.allclose(a.size, b.size) @pytest.fixture def default(): """Simple geometry.""" x=np.concatenate((np.ones(40,dtype=int), np.arange(2,42), np.ones(40,dtype=int)*2, np.arange(1,41))).reshape(8,5,4,order='F') return Grid(x,[8e-6,5e-6,4e-6]) @pytest.fixture def ref_path(ref_path_base): """Directory containing reference results.""" return ref_path_base/'Grid' class TestGrid: @pytest.fixture(autouse=True) def _patch_execution_stamp(self, patch_execution_stamp): print('patched damask.util.execution_stamp') @pytest.fixture(autouse=True) def _patch_datetime_now(self, patch_datetime_now): print('patched datetime.datetime.now') @pytest.mark.parametrize('cmap',[Colormap.from_predefined('stress'),'viridis']) def test_show(sef,default,cmap,monkeypatch): monkeypatch.delenv('DISPLAY',raising=False) default.show(cmap) def test_equal(self,default): assert default == default assert not default == 42 def test_repr(self,default): print(default) def test_read_write_vtr(self,default,tmp_path): default.save(tmp_path/'default') new = Grid.load(tmp_path/'default.vti') assert grid_equal(new,default) def test_invalid_no_material(self,tmp_path): v = VTK.from_image_data(np.random.randint(5,10,3)*2,np.random.random(3) + 1.0) v.save(tmp_path/'no_materialpoint.vti',parallel=False) with pytest.raises(KeyError): Grid.load(tmp_path/'no_materialpoint.vti') def test_invalid_material_type(self): with pytest.raises(TypeError): Grid(np.zeros((3,3,3),dtype='complex'),np.ones(3)) def test_cast_to_int(self): g = Grid(np.zeros((3,3,3)),np.ones(3)) assert g.material.dtype in np.sctypes['int'] def test_invalid_size(self,default): with pytest.raises(ValueError): Grid(default.material[1:,1:,1:], size=np.ones(2)) def test_save_load_ASCII(self,default,tmp_path): default.save_ASCII(tmp_path/'ASCII') default.material -= 1 assert grid_equal(Grid.load_ASCII(tmp_path/'ASCII'),default) def test_invalid_origin(self,default): with pytest.raises(ValueError): Grid(default.material[1:,1:,1:], size=np.ones(3), origin=np.ones(4)) def test_invalid_materials_shape(self,default): material = np.ones((3,3)) with pytest.raises(ValueError): Grid(material, size=np.ones(3)) def test_invalid_materials_type(self,default): material = np.random.randint(1,300,(3,4,5))==1 with pytest.raises(TypeError): Grid(material) @pytest.mark.parametrize('directions,reflect',[ (['x'], False), (['x','y','z'],True), (['z','x','y'],False), (['y','z'], False) ] ) def test_mirror(self,default,update,ref_path,directions,reflect): modified = default.mirror(directions,reflect) tag = f'directions_{"-".join(directions)}+reflect_{reflect}' reference = ref_path/f'mirror_{tag}.vti' if update: modified.save(reference) assert grid_equal(Grid.load(reference), modified) @pytest.mark.parametrize('directions',[(1,2,'y'),('a','b','x'),[1]]) def test_mirror_invalid(self,default,directions): with pytest.raises(ValueError): default.mirror(directions) @pytest.mark.parametrize('directions',[ ['x'], ['x','y','z'], ['z','x','y'], ['y','z'], ] ) def test_flip(self,default,update,ref_path,directions): modified = default.flip(directions) tag = f'directions_{"-".join(directions)}' reference = ref_path/f'flip_{tag}.vti' if update: modified.save(reference) assert grid_equal(Grid.load(reference), modified) def test_flip_invariant(self,default): assert grid_equal(default,default.flip([])) @pytest.mark.parametrize('direction',[['x'],['x','y']]) def test_flip_double(self,default,direction): assert grid_equal(default,default.flip(direction).flip(direction)) @pytest.mark.parametrize('directions',[(1,2,'y'),('a','b','x'),[1]]) def test_flip_invalid(self,default,directions): with pytest.raises(ValueError): default.flip(directions) @pytest.mark.parametrize('stencil',[1,2,3,4]) @pytest.mark.parametrize('selection',[None,[1],[1,2,3]]) @pytest.mark.parametrize('periodic',[True,False]) def test_clean(self,default,update,ref_path,stencil,selection,periodic): current = default.clean(stencil,selection,periodic) reference = ref_path/f'clean_{stencil}_{"+".join(map(str,[None] if selection is None else selection))}_{periodic}.vti' if update and stencil > 1: current.save(reference) assert grid_equal(Grid.load(reference) if stencil > 1 else default, current ) @pytest.mark.parametrize('cells',[ (10,11,10), [10,13,10], np.array((10,10,10)), np.array((8, 10,12)), np.array((5, 4, 20)), np.array((10,20,2)) ] ) def test_scale(self,default,update,ref_path,cells): modified = default.scale(cells) tag = f'grid_{util.srepr(cells,"-")}' reference = ref_path/f'scale_{tag}.vti' if update: modified.save(reference) assert grid_equal(Grid.load(reference), modified) def test_renumber(self,default): material = default.material.copy() for m in np.unique(material): material[material==m] = material.max() + np.random.randint(1,30) default.material -= 1 modified = Grid(material, default.size, default.origin) assert not grid_equal(modified,default) assert grid_equal(default, modified.renumber()) def test_substitute(self,default): offset = np.random.randint(1,500) modified = Grid(default.material + offset, default.size, default.origin) assert not grid_equal(modified,default) assert grid_equal(default, modified.substitute(np.arange(default.material.max())+1+offset, np.arange(default.material.max())+1)) def test_substitute_invariant(self,default): f = np.unique(default.material.flatten())[:np.random.randint(1,default.material.max())] t = np.random.permutation(f) modified = default.substitute(f,t) assert np.array_equiv(t,f) or (not grid_equal(modified,default)) assert grid_equal(default, modified.substitute(t,f)) def test_sort(self): cells = np.random.randint(5,20,3) m = Grid(np.random.randint(1,20,cells)*3,np.ones(3)).sort().material.flatten(order='F') for i,v in enumerate(m): assert i==0 or v > m[:i].max() or v in m[:i] @pytest.mark.parametrize('axis_angle',[np.array([1,0,0,86.7]), np.array([0,1,0,90.4]), np.array([0,0,1,90]), np.array([1,0,0,175]),np.array([0,-1,0,178]),np.array([0,0,1,180])]) def test_rotate360(self,default,axis_angle): modified = default.copy() for i in range(np.rint(360/axis_angle[3]).astype(int)): modified.rotate(Rotation.from_axis_angle(axis_angle,degrees=True)) assert grid_equal(default,modified) @pytest.mark.parametrize('Eulers',[[32.0,68.0,21.0], [0.0,32.0,240.0]]) def test_rotate(self,default,update,ref_path,Eulers): modified = default.rotate(Rotation.from_Euler_angles(Eulers,degrees=True)) tag = f'Eulers_{util.srepr(Eulers,"-")}' reference = ref_path/f'rotate_{tag}.vti' if update: modified.save(reference) assert grid_equal(Grid.load(reference), modified) def test_canvas_extend(self,default): cells = default.cells cells_add = np.random.randint(0,30,(3)) modified = default.canvas(cells + cells_add) assert np.all(modified.material[:cells[0],:cells[1],:cells[2]] == default.material) @pytest.mark.parametrize('sign',[+1,-1]) @pytest.mark.parametrize('extra_offset',[0,-1]) def test_canvas_move_out(self,sign,extra_offset): g = Grid(np.zeros(np.random.randint(3,30,(3)),int),np.ones(3)) o = sign*np.ones(3)*g.cells.min() +extra_offset*sign if extra_offset == 0: assert np.all(g.canvas(offset=o).material == 1) else: assert np.all(np.unique(g.canvas(offset=o).material) == (0,1)) def test_canvas_cells(self,default): g = Grid(np.zeros(np.random.randint(3,30,(3)),int),np.ones(3)) cells = np.random.randint(1,30,(3)) offset = np.random.randint(-30,30,(3)) assert np.all(g.canvas(cells,offset).cells == cells) @pytest.mark.parametrize('center1,center2',[(np.random.random(3)*.5,np.random.random()*8), (np.random.randint(4,8,(3)),np.random.randint(9,12,(3)))]) @pytest.mark.parametrize('diameter',[np.random.random(3)*.5, np.random.randint(4,10,(3)), np.random.rand(), np.random.randint(30)]) @pytest.mark.parametrize('exponent',[np.random.random(3)*.5, np.random.randint(4,10,(3)), np.random.rand()*4, np.random.randint(20)]) def test_add_primitive_shift(self,center1,center2,diameter,exponent): """Same volume fraction for periodic geometries and different center.""" o = np.random.random(3)-.5 g = np.random.randint(8,32,(3)) s = np.random.random(3)+.5 G_1 = Grid(np.ones(g,'i'),s,o).add_primitive(diameter,center1,exponent) G_2 = Grid(np.ones(g,'i'),s,o).add_primitive(diameter,center2,exponent) assert np.count_nonzero(G_1.material!=2) == np.count_nonzero(G_2.material!=2) @pytest.mark.parametrize('center',[np.random.randint(4,10,(3)), np.random.randint(2,10), np.random.rand()*4, np.random.rand(3)*10]) @pytest.mark.parametrize('inverse',[True,False]) @pytest.mark.parametrize('periodic',[True,False]) def test_add_primitive_rotation(self,center,inverse,periodic): """Rotation should not change result for sphere.""" g = np.random.randint(8,32,(3)) s = np.random.random(3)+.5 fill = np.random.randint(10)+2 G_1 = Grid(np.ones(g,'i'),s).add_primitive(.3,center,1,fill,inverse=inverse,periodic=periodic) G_2 = Grid(np.ones(g,'i'),s).add_primitive(.3,center,1,fill,Rotation.from_random(),inverse,periodic=periodic) assert grid_equal(G_1,G_2) @pytest.mark.parametrize('trigger',[[1],[]]) def test_vicinity_offset(self,trigger): offset = np.random.randint(2,4) vicinity = np.random.randint(2,4) g = np.random.randint(28,40,(3)) m = np.ones(g,'i') x = (g*np.random.permutation(np.array([.5,1,1]))).astype('i') m[slice(0,x[0]),slice(0,x[1]),slice(0,x[2])] = 2 m2 = m.copy() for i in [0,1,2]: m2[(np.roll(m,+vicinity,i)-m)!=0] += offset m2[(np.roll(m,-vicinity,i)-m)!=0] += offset if len(trigger) > 0: m2[m==1] = 1 grid = Grid(m,np.random.rand(3)).vicinity_offset(vicinity,offset,trigger=trigger) assert np.all(m2==grid.material) @pytest.mark.parametrize('periodic',[True,False]) def test_vicinity_offset_invariant(self,default,periodic): offset = default.vicinity_offset(trigger=[default.material.max()+1, default.material.min()-1]) assert np.all(offset.material==default.material) @pytest.mark.parametrize('periodic',[True,False]) def test_tessellation_approaches(self,periodic): cells = np.random.randint(10,20,3) size = np.random.random(3) + 1.0 N_seeds= np.random.randint(10,30) seeds = np.random.rand(N_seeds,3) * np.broadcast_to(size,(N_seeds,3)) Voronoi = Grid.from_Voronoi_tessellation( cells,size,seeds, np.arange(N_seeds)+5,periodic) Laguerre = Grid.from_Laguerre_tessellation(cells,size,seeds,np.ones(N_seeds),np.arange(N_seeds)+5,periodic) assert grid_equal(Laguerre,Voronoi) def test_Laguerre_weights(self): cells = np.random.randint(10,20,3) size = np.random.random(3) + 1.0 N_seeds= np.random.randint(10,30) seeds = np.random.rand(N_seeds,3) * np.broadcast_to(size,(N_seeds,3)) weights= np.full((N_seeds),-np.inf) ms = np.random.randint(N_seeds) weights[ms] = np.random.random() Laguerre = Grid.from_Laguerre_tessellation(cells,size,seeds,weights,periodic=np.random.random()>0.5) assert np.all(Laguerre.material == ms) @pytest.mark.parametrize('approach',['Laguerre','Voronoi']) def test_tessellate_bicrystal(self,approach): cells = np.random.randint(5,10,3)*2 size = cells.astype(float) seeds = np.vstack((size*np.array([0.5,0.25,0.5]),size*np.array([0.5,0.75,0.5]))) material = np.zeros(cells) material[:,cells[1]//2:,:] = 1 if approach == 'Laguerre': grid = Grid.from_Laguerre_tessellation(cells,size,seeds,np.ones(2),periodic=np.random.random()>0.5) elif approach == 'Voronoi': grid = Grid.from_Voronoi_tessellation(cells,size,seeds, periodic=np.random.random()>0.5) assert np.all(grid.material == material) @pytest.mark.parametrize('surface',['Schwarz P', 'Double Primitive', 'Schwarz D', 'Complementary D', 'Double Diamond', 'Dprime', 'Gyroid', 'Gprime', 'Karcher K', 'Lidinoid', 'Neovius', 'Fisher-Koch S', ]) def test_minimal_surface_basic_properties(self,surface): cells = np.random.randint(60,100,3) size = np.ones(3)+np.random.rand(3) threshold = 2*np.random.rand()-1. periods = np.random.randint(2)+1 materials = np.random.randint(0,40,2) grid = Grid.from_minimal_surface(cells,size,surface,threshold,periods,materials) assert set(grid.material.flatten()) | set(materials) == set(materials) \ and (grid.size == size).all() and (grid.cells == cells).all() @pytest.mark.parametrize('surface,threshold',[('Schwarz P',0), ('Double Primitive',-1./6.), ('Schwarz D',0), ('Complementary D',0), ('Double Diamond',-0.133), ('Dprime',-0.0395), ('Gyroid',0), ('Gprime',0.22913), ('Karcher K',0.17045), ('Lidinoid',0.14455), ('Neovius',0), ('Fisher-Koch S',0), ]) def test_minimal_surface_volume(self,surface,threshold): cells = np.ones(3,dtype=int)*64 grid = Grid.from_minimal_surface(cells,np.ones(3),surface,threshold) assert np.isclose(np.count_nonzero(grid.material==1)/np.prod(grid.cells),.5,rtol=1e-3) def test_from_table(self): cells = np.random.randint(60,100,3) size = np.ones(3)+np.random.rand(3) coords = grid_filters.coordinates0_point(cells,size).reshape(-1,3,order='F') z=np.ones(cells.prod()) z[cells[:2].prod()*int(cells[2]/2):]=0 t = Table(np.column_stack((coords,z)),{'coords':3,'z':1}) t = t.add('indicator',t.get('coords')[:,0]) g = Grid.from_table(t,'coords',['indicator','z']) assert g.N_materials == g.cells[0]*2 and (g.material[:,:,-1]-g.material[:,:,0] == cells[0]).all() def test_from_table_recover(self,tmp_path): cells = np.random.randint(60,100,3) size = np.ones(3)+np.random.rand(3) s = seeds.from_random(size,np.random.randint(60,100)) grid = Grid.from_Voronoi_tessellation(cells,size,s) coords = grid_filters.coordinates0_point(cells,size) t = Table(np.column_stack((coords.reshape(-1,3,order='F'),grid.material.flatten(order='F'))),{'c':3,'m':1}) assert grid_equal(grid.sort().renumber(),Grid.from_table(t,'c',['m'])) @pytest.mark.parametrize('periodic',[True,False]) @pytest.mark.parametrize('direction',['x','y','z',['x','y'],'zy','xz',['x','y','z']]) @pytest.mark.xfail(int(vtk.vtkVersion.GetVTKVersion().split('.')[0])<8, reason='missing METADATA') def test_get_grain_boundaries(self,update,ref_path,periodic,direction): grid = Grid.load(ref_path/'get_grain_boundaries_8g12x15x20.vti') current = grid.get_grain_boundaries(periodic,direction) if update: current.save(ref_path/f'get_grain_boundaries_8g12x15x20_{direction}_{periodic}.vtu',parallel=False) reference = VTK.load(ref_path/f'get_grain_boundaries_8g12x15x20_{"".join(direction)}_{periodic}.vtu') assert current.__repr__() == reference.__repr__() @pytest.mark.parametrize('directions',[(1,2,'y'),('a','b','x'),[1]]) def test_get_grain_boundaries_invalid(self,default,directions): with pytest.raises(ValueError): default.get_grain_boundaries(directions=directions) def test_load_DREAM3D(self,ref_path): grain = Grid.load_DREAM3D(ref_path/'2phase_irregularGrid.dream3d','FeatureIds') point = Grid.load_DREAM3D(ref_path/'2phase_irregularGrid.dream3d') assert np.allclose(grain.origin,point.origin) and \ np.allclose(grain.size,point.size) and \ (grain.sort().material == point.material+1).all() def test_load_DREAM3D_reference(self,ref_path,update): current = Grid.load_DREAM3D(ref_path/'measured.dream3d') reference = Grid.load(ref_path/'measured.vti') if update: current.save(ref_path/'measured.vti') assert grid_equal(current,reference) def test_load_Neper_reference(self,ref_path,update): current = Grid.load_Neper(ref_path/'n10-id1_scaled.vtk') reference = Grid.load(ref_path/'n10-id1_scaled.vti') if update: current.save(ref_path/'n10-id1_scaled.vti') assert grid_equal(current,reference)