#!/usr/bin/env python3 import os import sys from io import StringIO from optparse import OptionParser import numpy as np import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(usage='%prog options [file[s]]', description = """ Create seeds file by poking at 45 degree through given geom file. Mimics APS Beamline 34-ID-E DAXM poking. """, version = scriptID) parser.add_option('-N', '--points', dest = 'N', type = 'int', metavar = 'int', help = 'number of poking locations [%default]') parser.add_option('-b', '--box', dest = 'box', type = 'float', nargs = 6, metavar = ' '.join(['float']*6), help = 'bounding box as fraction in x, y, and z directions') parser.add_option('-x', action = 'store_true', dest = 'x', help = 'poke 45 deg along x') parser.add_option('-y', action = 'store_true', dest = 'y', help = 'poke 45 deg along y') parser.set_defaults(x = False, y = False, box = [0.0,1.0,0.0,1.0,0.0,1.0], N = 16, ) (options,filenames) = parser.parse_args() if filenames == []: filenames = [None] options.box = np.array(options.box).reshape(3,2) for name in filenames: damask.util.report(scriptName,name) geom = damask.Geom.load_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name) offset =(np.amin(options.box, axis=1)*geom.cells/geom.size).astype(int) box = np.amax(options.box, axis=1) \ - np.amin(options.box, axis=1) Nx = int(options.N/np.sqrt(options.N*geom.size[1]*box[1]/geom.size[0]/box[0])) Ny = int(options.N/np.sqrt(options.N*geom.size[0]*box[0]/geom.size[1]/box[1])) Nz = int(box[2]*geom.cells[2]) damask.util.croak('poking {} x {} x {} in box {} {} {}...'.format(Nx,Ny,Nz,*box)) seeds = np.zeros((Nx*Ny*Nz,4)) g = np.zeros(3,dtype=np.int) n = 0 for i in range(Nx): for j in range(Ny): g[0] = round((i+0.5)*box[0]*geom.cells[0]/Nx-0.5)+offset[0] g[1] = round((j+0.5)*box[1]*geom.cells[1]/Ny-0.5)+offset[1] for k in range(Nz): g[2] = k + offset[2] g %= geom.cells seeds[n,0:3] = (g+0.5)/geom.cells # normalize coordinates to box seeds[n, 3] = geom.material[g[0],g[1],g[2]] if options.x: g[0] += 1 if options.y: g[1] += 1 n += 1 comments = geom.comments \ + [scriptID + ' ' + ' '.join(sys.argv[1:]), 'poking\ta {}\tb {}\tc {}'.format(Nx,Ny,Nz), 'grid\ta {}\tb {}\tc {}'.format(*geom.cells), 'size\tx {}\ty {}\tz {}'.format(*geom.size), 'origin\tx {}\ty {}\tz {}'.format(*geom.origin), ] table = damask.Table(seeds,{'pos':(3,),'material':(1,)},comments) table.set('material',table.get('material').astype(np.int))\ .save(sys.stdout if name is None else \ os.path.splitext(name)[0]+f'_poked_{options.N}.seeds',legacy=True)