#!/usr/bin/env python3 import os import sys from io import StringIO from optparse import OptionParser import numpy as np import scipy.ndimage import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """ Average each data block of size 'packing' into single values thus reducing the former grid to grid/packing. """, version = scriptID) parser.add_option('-c','--coordinates', dest = 'pos', type = 'string', metavar = 'string', help = 'column label of coordinates [%default]') parser.add_option('-p','--packing', dest = 'packing', type = 'int', nargs = 3, metavar = 'int int int', help = 'size of packed group [%default]') parser.add_option('--shift', dest = 'shift', type = 'int', nargs = 3, metavar = 'int int int', help = 'shift vector of packing stencil [%default]') parser.add_option('-g', '--grid', dest = 'grid', type = 'int', nargs = 3, metavar = 'int int int', help = 'grid in x,y,z (optional)') parser.add_option('-s', '--size', dest = 'size', type = 'float', nargs = 3, metavar = 'float float float', help = 'size in x,y,z (optional)') parser.set_defaults(pos = 'pos', packing = (2,2,2), shift = (0,0,0), ) (options,filenames) = parser.parse_args() if filenames == []: filenames = [None] packing = np.array(options.packing,dtype = int) shift = np.array(options.shift, dtype = int) prefix = 'averagedDown{}x{}x{}_'.format(*packing) if any(shift != 0): prefix += 'shift{:+}{:+}{:+}_'.format(*shift) for name in filenames: damask.util.report(scriptName,name) table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name) if (options.grid is None or options.size is None): grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos)) else: grid = np.array(options.grid,'i') size = np.array(options.size,'d') packing = np.where(grid == 1,1,packing) # reset packing to 1 where grid==1 shift = np.where(grid == 1,0,shift) # reset shift to 0 where grid==1 packedGrid = np.maximum(np.ones(3,'i'),grid//packing) data = table.data.values.reshape(tuple(grid)+(-1,),order = 'F') averagedDown = scipy.ndimage.filters.uniform_filter( \ np.roll( np.roll( np.roll(data, -shift[0],axis = 0), -shift[1],axis = 1), -shift[2],axis = 2), size = list(packing) + [1], mode = 'wrap', origin = list(-(packing//2)) + [0])\ [::packing[0],::packing[1],::packing[2],:].reshape((packedGrid.prod(),-1),order = 'F') table = damask.Table(averagedDown,table.shapes,table.comments) coords = damask.grid_filters.cell_coord0(packedGrid,size,shift/packedGrid*size+origin) table.set(options.pos, coords.reshape((-1,3))) outname = os.path.join(os.path.dirname(name),prefix+os.path.basename(name)) table.to_ASCII(sys.stdout if name is None else outname)