#!/usr/bin/env python3 import os import sys from io import StringIO from optparse import OptionParser import numpy as np import damask scriptName = os.path.splitext(os.path.basename(__file__))[0] scriptID = ' '.join([scriptName,damask.version]) # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """ Produces a binned grid of two columns from an ASCIItable, i.e. a two-dimensional probability density map. """, version = scriptID) parser.add_option('-d','--data', dest = 'data', type = 'string', nargs = 2, metavar = 'string string', help = 'column labels containing x and y ') parser.add_option('-w','--weight', dest = 'weight', type = 'string', metavar = 'string', help = 'column label containing weight of (x,y) point') parser.add_option('-b','--bins', dest = 'bins', type = 'int', nargs = 2, metavar = 'int int', help = 'number of bins in x and y direction [%default]') parser.add_option('-t','--type', dest = 'type', type = 'string', nargs = 3, metavar = 'string string string', help = 'type (linear/log) of x, y, and z axis [%default]') parser.add_option('-x','--xrange', dest = 'xrange', type = 'float', nargs = 2, metavar = 'float float', help = 'min max limits in x direction (optional)') parser.add_option('-y','--yrange', dest = 'yrange', type = 'float', nargs = 2, metavar = 'float float', help = 'min max limits in y direction (optional)') parser.add_option('-z','--zrange', dest = 'zrange', type = 'float', nargs = 2, metavar = 'float float', help = 'min max limits in z direction (optional)') parser.add_option('-i','--invert', dest = 'invert', action = 'store_true', help = 'invert probability density') parser.add_option('-r','--rownormalize', dest = 'normRow', action = 'store_true', help = 'normalize probability density in each row') parser.add_option('-c','--colnormalize', dest = 'normCol', action = 'store_true', help = 'normalize probability density in each column') parser.set_defaults(bins = (10,10), type = ('linear','linear','linear'), xrange = (0.0,0.0), yrange = (0.0,0.0), zrange = (0.0,0.0), ) (options,filenames) = parser.parse_args() if filenames == []: filenames = [None] minmax = np.array([options.xrange,options.yrange,options.zrange]) result = np.empty((options.bins[0],options.bins[1],3),'f') if options.data is None: parser.error('no data columns specified.') for name in filenames: damask.util.report(scriptName,name) table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name) data = np.hstack((table.get(options.data[0]),table.get(options.data[1]))) for c in (0,1): # check data minmax for x and y (i = 0 and 1) if (minmax[c] == 0.0).all(): minmax[c] = [data[:,c].min(),data[:,c].max()] if options.type[c].lower() == 'log': # if log scale data[:,c] = np.log(data[:,c]) # change x,y coordinates to log minmax[c] = np.log(minmax[c]) # change minmax to log, too delta = minmax[:,1]-minmax[:,0] (grid,xedges,yedges) = np.histogram2d(data[:,0],data[:,1], bins=options.bins, range=minmax[:2], weights=table.get(options.weight) if options.weight else None) if options.normCol: for x in range(options.bins[0]): sum = np.sum(grid[x,:]) if sum > 0.0: grid[x,:] /= sum if options.normRow: for y in range(options.bins[1]): sum = np.sum(grid[:,y]) if sum > 0.0: grid[:,y] /= sum if (minmax[2] == 0.0).all(): minmax[2] = [grid.min(),grid.max()] # auto scale from data if minmax[2,0] == minmax[2,1]: minmax[2,0] -= 1. minmax[2,1] += 1. if (minmax[2] == 0.0).all(): # no data in grid? damask.util.croak('no data found on grid...') minmax[2,:] = np.array([0.0,1.0]) # making up arbitrary z minmax if options.type[2].lower() == 'log': grid = np.log(grid) minmax[2] = np.log(minmax[2]) delta[2] = minmax[2,1]-minmax[2,0] for x in range(options.bins[0]): for y in range(options.bins[1]): result[x,y,:] = [minmax[0,0]+delta[0]/options.bins[0]*(x+0.5), minmax[1,0]+delta[1]/options.bins[1]*(y+0.5), np.clip((grid[x,y]-minmax[2,0])/delta[2],0.0,1.0)] for c in (0,1): if options.type[c].lower() == 'log': result[:,:,c] = np.exp(result[:,:,c]) if options.invert: result[:,:,2] = 1.0 - result[:,:,2] comments = scriptID + '\t' + ' '.join(sys.argv[1:]) shapes = {'bin_%s'%options.data[0]:(1,),'bin_%s'%options.data[1]:(1,),'z':(1,)} table = damask.Table(result.reshape(options.bins[0]*options.bins[1],3),shapes,[comments]) if name: outname = os.path.join(os.path.dirname(name),'binned-{}-{}_'.format(*options.data) + ('weighted-{}_'.format(options.weight) if options.weight else '') + os.path.basename(name)) table.to_ASCII(outname) else: table.to_ASCII(sys.stdout)