#!/usr/bin/env python # -*- coding: UTF-8 no BOM -*- import os,sys,string import numpy as np from optparse import OptionParser import damask scriptID = string.replace('$Id$','\n','\\n') scriptName = os.path.splitext(scriptID.split()[1])[0] # -------------------------------------------------------------------- # MAIN # -------------------------------------------------------------------- parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """ Blows up each value to a surrounding data block of size 'packing' thus increasing the former resolution to resolution*packing. """, version = scriptID) parser.add_option('-c','--coordinates', dest='coords', metavar='string', help='column heading for coordinates [%default]') parser.add_option('-p','--packing', dest='packing', type='int', nargs=3, metavar='int int int', help='dimension of packed group [%default]') parser.add_option('-g','--grid', dest='resolution', type='int', nargs=3, metavar='int int int', help='resolution in x,y,z [autodetect]') parser.add_option('-s','--size', dest='dimension', type='float', nargs=3, metavar='int int int', help='dimension in x,y,z [autodetect]') parser.set_defaults(coords = 'ipinitialcoord') parser.set_defaults(packing = (2,2,2)) parser.set_defaults(grid = (0,0,0)) parser.set_defaults(size = (0.0,0.0,0.0)) (options,filenames) = parser.parse_args() options.packing = np.array(options.packing) prefix = 'blowUp%ix%ix%i_'%(options.packing[0],options.packing[1],options.packing[2]) # --- loop over input files ------------------------------------------------------------------------- if filenames == []: filenames = [None] for name in filenames: try: table = damask.ASCIItable(name = name, outname = os.path.join(os.path.dirname(name), prefix+ \ os.path.basename(name)) if name else name, buffered = False) except: continue table.report_name(scriptName,name) # ------------------------------------------ read header ------------------------------------------ table.head_read() # ------------------------------------------ sanity checks ---------------------------------------- if table.label_dimension(options.coords) != 3: errors.append('coordinates {} are not a vector.'.format(options.coords)) else: coordCol = table.label_index(options.coords) # ------------------------------------------ assemble header -------------------------------------- table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:])) # --------------- figure out size and grid --------------------------------------------------------- table.data_readArray() coords = [{},{},{}] for i in xrange(len(table.data)): for j in xrange(3): coords[j][str(table.data[i,coordCol+j])] = True grid = np.array(map(len,coords),'i') size = grid/np.maximum(np.ones(3,'d'),grid-1.0)* \ np.array([max(map(float,coords[0].keys()))-min(map(float,coords[0].keys())),\ max(map(float,coords[1].keys()))-min(map(float,coords[1].keys())),\ max(map(float,coords[2].keys()))-min(map(float,coords[2].keys())),\ ],'d') # size from bounding box, corrected for cell-centeredness size = np.where(grid > 1, size, min(size[grid > 1]/grid[grid > 1])) # spacing for grid==1 equal to smallest among other spacings packing = np.array(options.packing,'i') outSize = grid*packing # ------------------------------------------ assemble header --------------------------------------- table.head_write() # ------------------------------------------ process data ------------------------------------------- table.data_rewind() data = np.zeros(outSize.tolist()+[len(table.labels)]) p = np.zeros(3,'i') for p[2] in xrange(grid[2]): for p[1] in xrange(grid[1]): for p[0] in xrange(grid[0]): d = p*packing table.data_read() data[d[0]:d[0]+packing[0], d[1]:d[1]+packing[1], d[2]:d[2]+packing[2], : ] = np.tile(np.array(table.data_asFloat(),'d'),packing.tolist()+[1]) # tile to match blowUp voxel size elementSize = size/grid/packing elem = 1 for c in xrange(outSize[2]): for b in xrange(outSize[1]): for a in xrange(outSize[0]): data[a,b,c,coordCol:coordCol+3] = [a+0.5,b+0.5,c+0.5]*elementSize data[a,b,c,table.label_index('elem')] = elem table.data = data[a,b,c,:].tolist() outputAlive = table.data_write() # output processed line elem += 1 # ------------------------------------------ output finalization ----------------------------------- table.close() # close input ASCII table (works for stdin)