05a3b569fc
adding parallel version of addCalc for H5 table
2016-10-14 12:26:46 -04:00
33de9cf2b9
script for adding data from HDF5 to vtk file
2016-10-14 12:06:59 -04:00
1f01dce862
use 4 space indentation
2016-10-14 12:06:09 -04:00
2f2490e784
remove unused import
2016-10-14 10:48:08 -04:00
e5e2eef375
add script generate vtr file from HDF5
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following "let-it-fail" design
2016-10-14 10:45:42 -04:00
353b5b6994
avoid doctring as argument
2016-10-14 10:42:03 -04:00
9ac3f564c8
syntax fix
2016-10-13 13:45:25 -04:00
8cdc7c0b10
add xdmf wrapper generator for HDF5
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Not recommended for large dataset due to potential memory leak currently plaguing Xdmf ilbrary.
2016-10-13 13:41:04 -04:00
ec59dfeec0
do not reshape data
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since xdmf is not stable right now, there is no need to reshape the data to tie it to the mesh. comment them out for future reference
2016-10-13 13:22:37 -04:00
ace06fd0e1
skip dulplicated columns in ascii table
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also add a todo list at the top
2016-10-13 11:33:38 -04:00
c311ac47ca
force using rectangular mesh
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Paraview cannot handle large number of polyvertices using xdmf, forcing a meshed structure to by pass the problem.
2016-10-12 20:20:15 -04:00
ffcfe67c73
remove debug output, fix name handling error
2016-10-10 09:46:11 -04:00
7278605004
fix naming error
2016-10-09 19:13:44 -04:00
6450cb3003
fix syntax error
2016-10-09 19:12:45 -04:00
6eb111dc7c
add script convert ASCII table to HDF5
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using H5Table
2016-10-09 19:01:38 -04:00
4e8bd83d4b
syntax error fix
2016-10-07 15:32:10 -04:00
5951b45259
only grain file type 1 seems to make sense (type 2 has average values).
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For type one, data is fixed i.e. flexible labels are not useful
2016-10-06 15:22:05 +02:00
de88bebe99
handling defaults correctly for extend option
2016-10-06 12:14:07 +02:00
f78f89fb12
periodic microstructure needs to be updated per iteration (N).
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now calling script twice gives the same result as one call with N=2.
results for N=1 are not affected
2016-10-05 15:24:37 +02:00
3abf0bc2d3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-27 06:22:52 +02:00
0ffd74d536
correct flag "data" for updated vtk_addRectilinearGridData
2016-09-26 16:32:39 -04:00
1d06e82700
grain circumference identification
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fixed right most path selection criteria for grain circumference
2016-09-26 16:30:50 -04:00
5345b42d71
improved robustness against faulty RCB data
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deals gracefully with duplicate segments, new option to export cleaned up RCB
2016-09-25 21:18:53 -04:00
fb23c49b41
should be executable
2016-09-24 15:58:13 +02:00
e20623845a
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-22 16:14:07 +02:00
0f09a66b62
pyflake was complaining
2016-09-22 15:36:28 +02:00
f8901220ab
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-09-22 15:34:28 +02:00
25103205a8
bug fix, adjust to options change of vtk_addXXXData
2016-09-21 22:01:16 +02:00
0f636bf6c3
not needed
2016-09-21 17:47:37 +02:00
4cd8fe7f36
indices should be integers (visible warning)
2016-09-21 17:45:23 +02:00
43457dcfc5
flexible selection of axes
2016-09-21 17:43:07 +02:00
4ccc0cf5a1
tool to mirror geometries (enforce periodicity on measured data)
2016-09-21 17:06:50 +02:00
1180c8bb88
Fix calculation of interfaceEnergy
2016-09-15 17:36:43 -04:00
f3308dbef6
replace scalar/vector option with data
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vtk does not care 1D data array length
2016-09-14 19:59:26 -04:00
38d1a2c254
Merged branch development into development
2016-09-14 19:50:18 -04:00
eb69d6f4f1
Merged branch development into development
2016-09-14 19:42:15 -04:00
59c1eee16b
added possibility to restrict seed coordinates to fraction of unit box
2016-09-14 19:42:05 -04:00
ae16ccae61
need to use deep copy when converting np array to vtk array
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for batch array conversion, it is necessary to use the deep copy to ensure numpy_support.numpy_to_vtk works as it should.
2016-09-14 15:06:00 -04:00
53d2df6058
vector support 1D vector with arbitrary lenght
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simple hack to bypass the size check for vectors since vtk does not care the vector size.
2016-09-14 12:37:07 -04:00
804931db9e
force type cast index to int for numpy array
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Force type casting indices into int array to avoid warning:
VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future
For more info, see http://stackoverflow.com/questions/20084218/deprecation-warning-in-scikit-learn-svmlight-format-loader
2016-09-12 19:09:48 -04:00
77729f39e3
commenting last commit
2016-09-11 14:41:48 +02:00
06405bc251
fixed coordinate system convention to be right handed always instead of random left and right handed assignment
2016-09-10 16:39:25 -04:00
2daad7542e
added option for periodic averaging
2016-09-10 16:39:25 -04:00
ee322be870
use np.histogram2d, fixed list.append bug when using weight column
2016-09-09 16:17:00 -04:00
8c4767d58c
syntax fix
2016-09-09 07:28:54 -04:00
017c08a7bb
syntax fix
2016-09-09 07:28:31 -04:00
da538fbce9
speed up of VTK data transformation
2016-09-08 18:05:49 -04:00
c05307a273
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-03 14:35:53 +02:00
a2f3839ca8
add missing numpy import
2016-09-02 14:37:15 -04:00
d9077805e4
Forced symetric tensor when adding tensor to vtk
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VTK addTensor by default using the lower triangle to populate its tensor object. Enforcing the tensor to be symmetric to avoid necessary confusion when adding data (most stress/strain tensor should symmetric by default, so it should not affect the results)
2016-09-02 09:30:49 -04:00
20d1164e5d
add tensor support for vtk_addRectlinearGridData
2016-09-01 16:57:29 -04:00
6db0a42eae
addvtk data now support tensor type (9 components)
2016-09-01 12:47:26 -04:00
4b02a55f4d
explicit type casting from boolean to int
2016-08-30 16:08:47 -04:00
891ac4d585
fixed comma syntax error
2016-08-25 12:17:27 -04:00
55d6adf1b8
renamed to reflect more general nature of script
2016-08-25 12:15:41 -04:00
85abf84186
generalized to user-specified mapping function instead of hardwired avg
2016-08-25 12:15:03 -04:00
f984f1ebea
enable floating point data and corrected counting of microstructures
2016-08-24 16:05:50 -04:00
7710f4d444
hybridIA (stand alone script and DAMASK) need standard ASCII table
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export of TSL OIM is similar to standard ASCII table, simply add correct header
including labels
2016-08-23 17:21:17 +02:00
c2b1499d84
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-08-16 12:46:03 +02:00
64ac05fc26
removed left-over debug output
2016-08-11 14:24:40 -04:00
600731b15c
modernized, gracefully add NaN for out-of-bounds mapping
2016-08-11 14:23:29 -04:00
d239cab3ae
corrected help
2016-08-11 13:48:15 +02:00
a0567e8642
added FeatureID and right coordniates to table
2016-08-04 11:11:24 +02:00
ccc0ac35ac
copied from ang_toTable
2016-08-02 11:30:36 +02:00
6c82641713
added defaults (bugfix)
2016-08-01 16:43:14 +02:00
fa3387486d
clarified meaning of possible (global) rotation (lab/crystal frame)
2016-07-31 19:35:10 -04:00
79ff040426
sorting and clarification of help, shortening of output labels
2016-07-30 15:07:44 -04:00
23a57ec78f
reinstalled "NOQA" keyword for "import math"
2016-07-30 12:52:49 -04:00
ab3415d44e
polishing and rearrangement of code snippets
2016-07-30 12:46:00 -04:00
c3650a1b00
shebang got reverted
2016-07-30 08:20:57 +02:00
6a80c71c0b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-29 20:42:38 -04:00
304fdf1ebe
can deal with "veterans" and "newbies" meaning over ride existing with new
2016-07-29 20:41:15 -04:00
b39915afe1
Merged branch development into development
2016-07-29 17:51:16 -04:00
0bbf54e0e4
switched to string.format() method
2016-07-29 17:49:29 -04:00
afff0b8614
fixed STDOUT error
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no files on command line translate to "filename" being empty list. Cannot test for filename[0] then...
2016-07-29 17:48:40 -04:00
2a0be6d232
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-27 08:57:13 +02:00
1195593233
some casting was needed, corrected header
2016-07-25 19:39:09 +02:00
4d01e826c5
fixed typo in usage msg
2016-07-25 00:46:11 -04:00
99963ca1dd
Merged branch development into development
2016-07-24 19:19:03 -04:00
6f527b2af8
fixed upperCase typo in vtk_addPointcloudData call
2016-07-24 19:18:48 -04:00
03bb0b8a98
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 19:36:47 +02:00
cd63a92733
using python 2.7 has shebang will also work on mac without symlink
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unless someone uses the 6 year old python 2.6, this should be save
2016-07-18 19:35:35 +02:00
0a2d5e4c2a
add missing newline to header for postResult
2016-07-18 12:29:12 -04:00
325e153d3d
import of string not needed
2016-07-18 11:22:53 +02:00
e3f83b6d66
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 11:22:12 +02:00
1b30b186f4
rootRelation keyword was still used
2016-07-18 06:17:22 +02:00
0c2b7782d4
reporting correct ID
2016-07-17 18:18:57 +02:00
40414c767c
like ang_toTable (not sure if both are needed anyway)
2016-07-15 21:03:10 +02:00
ce7cd36bf5
better be done with load case rotation
2016-07-15 20:23:20 +02:00
e8153ad196
corrected name
2016-07-15 15:48:53 +02:00
c792b73b4e
simplified
2016-07-15 14:52:48 +02:00
7d84b99710
bugfix: axis out of bounds for np.repeat, np.tile seems to be ok @Philip: pls check. autodoc friendly help
2016-07-15 10:34:17 +02:00
9e8adf731b
fixed buggy a.all() call
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removed squaring of Laguerre weights (no clue why we considered this a good idea in the first place)
2016-07-07 15:23:01 -04:00
3ada327d3f
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-04 21:43:33 +02:00
745c012088
fully adopted code from addDisplacement
2016-06-29 20:09:42 +02:00
f04b737e4c
Merge remote-tracking branch 'origin/development' into NoCoreModule
2016-06-29 16:11:07 +02:00
2c8427eb2a
seems to work now
2016-06-29 12:35:50 +02:00
9bf8b6221c
fixed fluct displacement
2016-06-29 12:11:07 +02:00
a64388355a
simplified
2016-06-29 11:02:49 +02:00
9ea6d3afd7
simplified FFT statements
2016-06-29 10:58:15 +02:00
chen