26f8f74310
undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line.
2015-10-09 12:55:30 +00:00
851d2e1b2c
prevent to load columns more than once\n @Philip: OK?
2015-10-08 17:47:00 +00:00
801d57af4c
fixed buggy behavior caused by assigning string instead of single-item list to readBuffer.
2015-10-07 01:03:26 +00:00
95a8b54996
buggy behavior when read buffer contained string (len > 0, but no pop() method)
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@Philip: please check if intended behavior
2015-10-06 16:19:37 +00:00
e089e60202
transparently deal with one-dimensional array output
2015-09-30 18:44:54 +00:00
b2243ae3c1
small polishing
2015-09-29 22:25:57 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
7495b33b68
label_dimension dropped indices >9 due to buggy string comparison…
2015-09-08 23:12:45 +00:00
858fe7e897
prevent closing sys.stdin or sys.stdout
2015-08-24 00:40:52 +00:00
7ceb7f7614
fixed problem when reading single label through data_readArray
2015-08-23 23:18:34 +00:00
6ba76c3832
introduced public line object holding currently read data line as string.
...
label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
93dd9f5c09
bug fix regarding self.tmpext.
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added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
64515d7aca
simplified interface:
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name == None: read from stdin
outname == None and not readonly mode: do in-place substitution of name (with transparent file renaming upon table.close)
2015-08-12 17:42:38 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
08f4495721
changed readArray default behavior to reading always scalars when columns are referenced by number
2015-07-21 20:44:40 +00:00
c46e639a38
fixed bug preventing first line to be read when using readArray without labels.
2015-07-09 03:40:15 +00:00
16edd1693d
now only trying to close input and output tables.
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corrected buggy behavior in case no columns found in data_readArray.
2015-06-19 06:08:09 +00:00
3d7dfba40a
syntax polishing
2015-06-13 11:43:34 +00:00
48f31f13a6
label_index now transparently searches for “1_”+label if label itself not found.
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added label_dimension method returning the dimension of the requested object, i.e. 1, 3, or 9 as typical outcomes.
2015-06-08 05:02:11 +00:00
83d5686995
added check before trying to delete/dismiss file
2015-06-06 11:18:39 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
4bd44f8e43
better robustness against scalar arguments and “None”.
2015-05-21 21:53:54 +00:00
99adf42f0f
improved robustness of labels_index determination.
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fixed errors in data_readArray and improved functionality. Can now cope with list of columns. reads all valid columns returning list of invalid ones. updates table.labels accordingly.
2015-05-21 00:02:32 +00:00
06f017effa
added possibility to dismiss (delete) output file upon closing an ASCIItable.
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“None” labels are disregarded in labels_index() method.
2015-05-19 21:11:49 +00:00
9f569d04c6
added “.close()” method to close input and output at the same time.
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accept header only if space present between number and “head” string.
2015-05-19 20:35:56 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
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test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
d5e2e42f21
file handle closing can now be done from within class.
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methods:
.input_close()
.output_close()
2014-08-22 15:37:46 +00:00
a8ced53b59
fix for the fix. now both, single column and single line files are working
2014-08-07 08:51:25 +00:00
1402527f48
fixed nasty bug cause strange behavior for voronoi tessellation
2014-08-06 19:32:26 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
4e5803fc36
forgot to clear readBuffer upon data_rewinding...
2014-02-06 16:37:45 +00:00
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
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seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
83e4bc3247
updated test for restart, now also checking if number of increments is the same
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fixed output of test class
fixed small bug? in asciitable.py, @philip: please check
2014-02-03 19:30:28 +00:00
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
0e84db8f19
improved stability of xxx_append commands when dealing with iterable content
2013-12-12 02:36:05 +00:00
9c7335f799
bug fix: wrong variable name "label" --> "labels"
2013-12-11 14:38:09 +00:00
c1b5b802ec
fixed problem of adding strings in "data_append" resulting in infinite recursion.
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more gracefully check for problems.
numpy.loadtxt now correctly transposes single column of data.
2013-12-09 15:45:18 +00:00
05fa8bf580
make data_append() coping with any iterable data type (not just list)
2013-11-25 18:58:27 +00:00
ec6440f1f4
when adding labels now making sure that they get processed during output writing
2013-10-08 13:54:13 +00:00
3eb8aa1362
checked for python3 compatibility:
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use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
9abc9a99fc
added possibility to
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* read ASCIItable not having labels
* write numpy array as data
2013-06-30 00:21:51 +00:00
dc746119e3
introduced two more helper functions:
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- labels_index
- data_asArray
2012-12-06 21:46:19 +00:00
31753be16f
updated setup/setup_processing.py with new files
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added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
3f1c16e079
removed headerLen completely, use len(self.info)+1 instead
2012-03-09 14:18:48 +00:00
6b8bebad49
removed unused headerLen property. added info_clear() method
2012-02-23 13:54:38 +00:00
58fdf4ebfc
improved STDOUT | STDIN constructs -- no more broken pipe left-overs (I hope)
2012-02-16 18:42:04 +00:00
c24f258eba
now works with piped STDOUT | STDIN constructs.
2012-02-16 18:03:14 +00:00
Philip Eisenlohr