a5d5638e4a
allow uncompressed files
2020-09-12 13:46:55 +02:00
865c90d00b
first check data type, then determine length of data...
2020-09-09 19:10:03 -04:00
7d9a4c08ce
Do not strictly require np.ndarrays for grid, size, or origin when not essential for functionality.
2020-09-10 00:59:40 +02:00
9fb3fef4b0
changed British "normalise" to US "normalize" as we (should) follow US English everywhere else.
2020-09-08 10:39:31 -04:00
a4785ba562
modified file writing of geom and table to a general to_file() that takes a "format=" argument
2020-09-03 10:53:16 -04:00
6785062a10
Merge branch 'development' into 'vtk-to-file-method'
...
# Conflicts:
# python/tests/test_VTK.py
2020-08-31 21:10:29 +02:00
6986d20b32
Merge branch 'geom-out-of-place' into 'development'
...
Geom methods are now out-of-place, i.e. return an updated duplicate
See merge request damask/DAMASK!203
2020-08-31 12:39:01 +02:00
c58693328e
don't try to access folders that don't exist
...
this happened in the case when different types of output exist in
different phases, e.g.
Aluminum: generic, plastic, sources
Steel: generic, plastic
We are a little bit inconsistent because 'generic' and 'plastic' are
always created (even if empty) but 'sources' will only exist if it
contains output. In future, we should have only folders that actually
contain data
2020-08-28 12:45:41 +02:00
9457435612
Merge branch 'polishing-for-release' into 'development'
...
Polishing for release
See merge request damask/DAMASK!206
2020-08-27 17:01:43 +02:00
94797f8325
ignore all kinds of FPE
2020-08-27 09:32:49 +02:00
c5761831e2
more meaningful message
...
if add_xxx (Results) does not find matching datasets, inform the user
about this fact instead of saying
TypeError: object of type 'IMapUnorderedIterator' has no len()
2020-08-27 00:14:37 +02:00
c2191fd930
Make logic to mask (outside of) primitive more apparent (hopefully).
2020-08-27 00:06:52 +02:00
229f6139c8
better user experience
...
- no meaningless warnings regarding floating point precision
- meaningful error message for invalid header
2020-08-26 23:54:56 +02:00
b9f1421c6b
[skip ci] removed unnecessary line continuations "\"
2020-08-26 17:27:08 -04:00
3f24d16603
renamed VTK.write() to VTK.to_file()
2020-08-26 16:15:15 -04:00
da46e5ea9a
cannot use np.linalg.norm when dealing with exponent triple
2020-08-26 15:49:25 -04:00
06b524d13e
added 'iso' as possible lattice (with no symmetry)
2020-08-26 21:39:20 +02:00
68c2908ba8
Merge branch 'rename-hdf5-output' into development
2020-08-26 12:34:56 +02:00
bf401e56cf
avoid name clash with damask.Geom
2020-08-25 09:56:24 +02:00
800dac5d01
correct type handling
...
no reason to calculate fill twice
2020-08-25 08:47:24 +02:00
96d4975fc4
using numpy functionality
2020-08-25 08:34:04 +02:00
51da632108
aiming at testing each individual statement
2020-08-25 07:49:56 +02:00
2d98325fa4
increasing test coverage
2020-08-25 01:21:17 +02:00
2751cdb6af
support comments also in vtr
2020-08-25 00:40:14 +02:00
9a2ac31545
explicit is better then implicit
2020-08-24 23:35:46 +02:00
0ceba2a6d3
use central functionality
2020-08-24 23:28:26 +02:00
71e08ea66a
small fixes:
...
- numpy has multiple float variants
- start renaming microstructure -> materialpoint where it does not hurt
- no need for type check if comparing against set of valid directions
(or I miss some corner cases)
2020-08-24 23:23:47 +02:00
2560f014a3
Merge remote-tracking branch 'origin/increase-geom-test-coverage' into geom-out-of-place
2020-08-24 17:17:31 -04:00
55443a3ff5
reflect change of variable names in file layout version
2020-08-24 22:54:09 +02:00
279d43ccc6
include version info + date in comments (Table class)
2020-08-24 19:04:59 +02:00
9d505c8518
better readable
...
- more explicit reporting
- always relative import for DAMASK
2020-08-24 09:58:24 +02:00
0d3ef29554
more logical encapsulation
...
- getting data out of VTK is a functionality of the VTK class. Need to
discuss whether the VTK class should also provide grid and size (works
only for rectilinear grid, so hiding VTK type is not possible
anymore), but the current situation requires the Geom class to rely on
'internals' of the VTK class
- header is specific to *.geom format, not to Geom objects.
2020-08-24 06:46:22 +02:00
507a165733
functionality for getting data
...
- handy for Geom class, but could be of general interest
- add/set/get comments: follows same functions as for Geom class
2020-08-24 06:40:36 +02:00
446ac03b07
All geom methods are now out-of-place, i.e. return an updated duplicate (to allow for daisy chaining).
...
* Added comments when methods acted.
* Added diff method
* Added flip method
* Fixed add_primitive inversion bug (again...)
* Fixed cell centering bug in add_primitive
* Added missing tests
2020-08-23 19:43:46 -04:00
44015082a3
dead code (copy and paste error)
2020-08-24 00:34:07 +02:00
9867830d68
store history of geometry modifications
2020-08-23 23:52:48 +02:00
a1c78b778a
WIP: track history in VTK objects
2020-08-23 23:22:53 +02:00
7b50a3b364
material.config is not used anymore
2020-08-23 15:20:11 +02:00
d65371d42f
removed unused and untested functionality
...
PEP 20: Explicit is better than implicit.
2020-08-23 12:55:55 +02:00
6f79573140
more test coverage
2020-08-23 11:05:56 +02:00
07af7b2f98
geom is written to vtr exlcusively, not to general vtk
...
base tests on vtr
2020-08-23 10:50:15 +02:00
64e7582e8e
consistent interface to ndimage filters
...
Boolean 'periodic' sets mode to 'wrap' or 'nearest'
2020-08-23 10:02:22 +02:00
975db01f31
microstructure -> materialpoint
...
at least for new functionality
2020-08-23 09:38:08 +02:00
5fb2d30ee4
fast and for arbitrary type
2020-08-23 09:02:17 +02:00
b731b1e768
Geom.to_vtk improvements
...
- should be integer
- should have a test
2020-08-23 08:49:49 +02:00
2b09a7d31d
fixed Geom.canvas bug, added Geom.from_vtk, added mode,selection options to Geom.clean
2020-08-22 21:36:11 -04:00
499ce01748
added Geom.copy() method
2020-08-22 13:57:31 -04:00
ff7eed4477
(unified) type hints
2020-08-08 20:56:17 +02:00
55a620b378
migrating to library
2020-08-08 20:14:30 +02:00
a0e0f28e51
migrating shell scripts to library
2020-08-08 19:42:34 +02:00
5fcff876f9
replace selectively
...
useful for vicinity_offset and add_primitive
2020-08-08 18:41:47 +02:00
56eb57d253
homogenization will be removed soon, stop reporting it
2020-08-08 18:24:17 +02:00
7824a61f2e
Merge branch 'user_defined_add_calculation' into 'development'
...
User defined add calculation
See merge request damask/DAMASK!195
2020-08-06 00:53:16 +02:00
ce00371f52
fixed rounding bug and updated reference images
2020-08-05 10:44:10 -04:00
e4103564a9
16bit color index; proper rounding of index values
2020-08-05 10:08:48 -04:00
e73ffd6da9
fixed and condensed lo,hi range assignment
2020-08-04 20:29:27 +02:00
e07c00a592
polishing + simple test
...
autoscaling seems to be broken
2020-08-04 20:14:04 +02:00
84551c9d1e
integrated former imageData functionality as "shade" method
2020-08-04 13:05:30 -04:00
ae20f5ffe6
attempt to fix parallel writing on MacOS
...
should resolve TypeError: cannot pickle
'vtkmodules.vtkIOXML.vtkXMLRectilinearGridWriter' object error
2020-08-03 18:19:38 +02:00
a9f53f4822
non-vectorized formulas can be implemented in a user functionc
2020-07-31 17:04:14 +02:00
50d7842dbe
more tests
2020-07-31 16:50:01 +02:00
aadce1e554
Merge branch 'development' into user_defined_add_calculation
2020-07-31 16:15:31 +02:00
4860f9c9ce
drop support for parallel marc versions
...
can still be handled by the user, but is a niche use case
2020-07-18 09:51:53 +02:00
2bbd68d964
with_suffix strips .1 from 2019.1
2020-07-16 09:33:17 +02:00
199ec51bf8
typo
2020-07-15 21:59:43 +02:00
9225d439ab
object oriented path handling
2020-07-15 21:58:24 +02:00
fa7f7e6fa4
don't complain if ssh without -X/-Y
2020-07-15 21:19:09 +02:00
333e840b09
standard behavior
...
most modules have an __version__ attribute
2020-07-15 20:57:56 +02:00
6259984e93
simplified
...
complicated, but allows to use functions as properties
2020-07-15 20:54:37 +02:00
b0e06f180a
reading numpy manual ...
...
https://numpy.org/doc/stable/reference/generated/numpy.isclose.html
rtol=1.e-8, b=1 gives atol+btol=1.e-8+1e-9, simplified to 1e-8
2020-07-13 22:48:29 +02:00
e1bbaac0d7
Merge branch 'Vectorize-Orientation' into 'development'
...
Vectorize orientation
See merge request damask/DAMASK!186
2020-07-03 12:22:04 +02:00
7b3d1204fa
easier to use
2020-07-03 07:29:31 +02:00
d4f97f8346
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!184
2020-07-02 21:52:47 +02:00
7b899f1ff1
fixed output number format width for single increment0
2020-07-02 11:33:09 -04:00
5a96708f41
added __iadd__ method
2020-07-02 10:26:04 -04:00
f3ff2e7412
added __iadd__ method
2020-07-02 10:25:04 -04:00
3b72d0ec72
added __invert__ method to reverse colormap
2020-07-02 10:13:47 -04:00
b88becb9d0
don't go out of focus during initialization
2020-07-02 08:25:35 +02:00
208d5109d4
still needed ...
2020-07-02 08:14:13 +02:00
86dc7054a4
still needed
2020-07-01 22:11:16 +02:00
4abd77fccf
more test coverage
2020-07-01 17:31:16 +02:00
be1eb996e0
more tests and cleaning
2020-07-01 15:12:34 +02:00
a7e3dd5a56
Merge branch 'development' into Vectorize-Orientation
2020-07-01 13:30:39 +02:00
e18a5b8a1b
simplifications + more tests
2020-07-01 08:57:28 +02:00
de8e9b5fc1
fast reduced operation
2020-07-01 00:37:02 +02:00
23365660d8
polishing
2020-06-30 23:18:32 +02:00
ef0c78745a
fix for vectorized in_SST + test
2020-06-30 23:05:41 +02:00
49d448dced
vectorized and cleaned
2020-06-30 21:43:57 +02:00
be21d1289d
using slicing method
2020-06-30 16:33:04 +02:00
c86e3e292c
WIP: cleaning namespace
2020-06-30 14:07:10 +02:00
9d94b521ad
polishing
2020-06-30 13:31:58 +02:00
ce7018164f
WIP: more reasonable naming
2020-06-30 13:05:06 +02:00
b8b34080fe
enable array like slicing/iteration
2020-06-30 12:16:47 +02:00
c8adfae0fa
bugfix: wrong variables used
2020-06-30 07:16:49 +02:00
decbe8074a
not using unassigned variable
2020-06-29 22:22:21 -04:00
d3b3d628b2
PEP conformity...
2020-06-29 22:07:14 -04:00
39aac76859
__add__, from_range, fixed missing np.array(colors), show peppered...
2020-06-29 22:04:03 -04:00
97ca1b1a9b
try wxPython before tkinter, recent macOS otherwise fails
2020-06-29 22:02:12 -04:00
d06daec4cb
reducec vectorized is improved
2020-06-29 18:25:45 +02:00
2d0c680daf
useful information
2020-06-29 07:30:42 +02:00
4875191ffd
change if statement so github doesnt complain
2020-06-28 19:32:22 +02:00
a99f016438
problem with if value is true / if value == True
2020-06-28 19:29:52 +02:00
37f7362cbe
Merge branch 'development' into misc-improvements
2020-06-28 19:23:17 +02:00
323f828606
Merge branch 'development' into modernize_colormap
2020-06-28 19:09:52 +02:00
8484d2e6cc
fix github stuff
2020-06-28 19:05:10 +02:00
352c4e95f1
more vectorized
2020-06-28 19:03:06 +02:00
b3f5ee022a
unified style
2020-06-28 11:40:19 +02:00
6a748d2edf
do not expand single strings into characters
2020-06-28 11:19:18 +02:00
ae4146f1c6
report version, write out 'modern' ASCII table style
2020-06-28 11:18:22 +02:00
e81b67e964
polishing
2020-06-28 10:32:59 +02:00
1c03bd157f
more testing
2020-06-28 10:25:28 +02:00
b78c809375
real output
2020-06-28 10:25:28 +02:00
3513754647
low/high instead of left/right
2020-06-28 10:25:28 +02:00
d965d66319
[skip ci] documenting
2020-06-28 09:34:10 +02:00
8a9a768a77
support pathlib.Path
2020-06-28 07:17:51 +02:00
8c8132bcd7
coordinates should not have random names
2020-06-27 23:37:09 +02:00
c929af12c0
testing/polishing
2020-06-27 19:44:12 +02:00
234699bd18
reverse should return DAMASK colormap
2020-06-27 16:25:10 +02:00
e779e190ea
new colormap class for use in python
...
- based on matplotlib "ListedColormap"
- constructors
- Array of RGB values (inherited),
- 'from_bounds': perceptual uniform colormap within given bounds
- 'from_predefined': from matplotlib or DAMASK templates
- export to files (WIP)
- preview on screen
2020-06-27 16:12:40 +02:00
1f9b5280cb
forgotten debug statement
2020-06-26 11:47:04 +02:00
a69f82e7c3
speed up vtk out
...
- limit to single precision
- write in background
2020-06-26 11:45:54 +02:00
bfae88a364
numpy compatible
2020-06-26 11:45:30 +02:00
bddb514072
more systematic reporting
2020-06-26 11:45:06 +02:00
3290e2c585
handle even obscure directions
2020-06-25 08:29:36 +02:00
5d7213b062
restore reminder to document changes
...
causes conflicts with outdated tests and is not urgent: postpone until
release.
2020-06-25 08:19:07 +02:00
c9829f0f1f
only Chuck Norris can divide by zero
2020-06-25 08:18:39 +02:00
cd23937af5
Merge branch 'development' into f-strings
2020-06-25 07:46:24 +02:00
e64d353865
condensed scale_to_coprime; added test of scale_to_coprime
2020-06-24 18:37:33 -04:00
9999560247
easier understanding of from_ang data layout interpretation
2020-06-24 18:36:43 -04:00
14d3b7e66d
more f-stringing
2020-06-24 16:59:55 -04:00
966b6f8007
shapes init copes with integers instead of strict tuples; introduced f-strings
2020-06-24 14:18:06 -04:00
f8f433e826
introduced f-strings
2020-06-24 14:13:56 -04:00
ff858fd4c8
[skip ci] corrected help string for "srepr"
2020-06-24 20:13:09 +02:00
4314ec1f37
[skip ci] started to replace .format() with f-strings
2020-06-24 11:02:37 -04:00
3d93a5ff00
Merge branch 'migrate-to-pathlib' into 'development'
...
Migrate to pathlib
See merge request damask/DAMASK!177
2020-06-24 14:54:36 +02:00
6fa5ae6ebf
literature from Karo
2020-06-22 23:14:58 +02:00
e33895dd35
[skip ci] better logic
2020-06-21 10:37:09 +02:00
c6a5bb8a3b
is 2020
2020-06-21 10:04:45 +02:00
4c5939ef23
small polishing
2020-06-20 22:51:00 +02:00
15b43bcebf
from_directions is not general, removed
...
polishing
2020-06-20 19:57:49 +02:00
3f63a4fdbc
[skip ci] typo
2020-06-20 18:13:34 +02:00
4dae3643c9
vectorized IPF color working
...
results also uses the vectorized form.
Still needs careful checking
2020-06-20 17:15:13 +02:00
ebdb65d31f
standard broadcast_to behavior
2020-06-20 16:35:22 +02:00
262346ff5a
polishing
2020-06-20 16:34:19 +02:00
d93ed2bc5c
several improvements:
...
- vectorized from_directions
- more tests (96% coverage, only random functionality is untested)
- updated documentation, folloing numpy standard
- inverse operator '~' introduced
2020-06-20 12:20:43 +02:00
055fa64f5f
better readable
2020-06-19 12:25:46 +02:00
13bf7515ce
WIP (broken?): vectorized calculation of IPF color
2020-06-19 10:54:13 +02:00
1648963b57
vectorized equivalent orientation calculation
2020-06-18 22:53:04 +02:00
cdda556e18
small improvements
...
- hack for reporting multiple rotation
- bugfix for vectorized Rodrigues vector
- more general broadcasting (even more powerfull then np.broadcast_to)
2020-06-18 22:30:22 +02:00
fe5e5babfe
more useful for vectorized calculations
2020-06-18 22:29:28 +02:00
cb1779ef9a
fix pep257: D415 / First line should end with a period, question mark, or exclamation point (not e)
2020-06-05 13:49:30 +02:00
eae9698d22
equivalent,related and inFZ vectorized + pytest
2020-06-05 13:48:12 +02:00
ac09a2912a
fix python/damask/_orientation.py contains invalid python3 code 2
2020-06-04 16:45:44 +02:00
6a24aee171
fix python/damask/_orientation.py contains invalid python3 code
2020-06-04 16:44:57 +02:00
3897136f85
avoid python/damask/_orientation.py exceeds line length limit (maximum line length 141 > 132)
2020-06-04 16:43:28 +02:00
0c41e33434
orientation.equivalent takes several rotations at the same time + small test"
...
"
""
2020-06-04 16:39:24 +02:00
a9c61ede69
bugfix: should also work if DAMASK_NUM_THREADS is not set
2020-06-03 20:24:18 +02:00
bda555fd1c
we are looking for a path, not for a file
2020-06-03 16:47:03 +02:00
bb5485927e
names like 2020.2 cannot be converted to int
2020-06-03 15:18:46 +02:00
5da1aa49bc
string should be a Path object
2020-06-03 15:17:00 +02:00
9b04a45bbd
bugfix (wrong variable name)
2020-06-03 13:53:00 +02:00
3be1a33820
easier to read
2020-06-03 13:32:47 +02:00
c5d0c7e52e
easier to read, more flexible
2020-06-03 10:44:40 +02:00
ac9fddd9e9
Merge remote-tracking branch 'origin/development' into misc-improvements
2020-06-02 00:12:50 +02:00
a51cc39613
proper docstring
2020-06-01 22:13:01 +02:00
72a0b1fae5
testing and polishing
2020-06-01 11:33:22 +02:00
7a193639fb
also show datasets without unit
...
currently, this is only the orientation dataset
Also enable renames. Since this alters the history, the user need to
enable this
2020-05-31 23:50:06 +02:00
bcb0ce5e5e
typo
2020-05-31 18:51:12 +02:00
adb92de8cc
Merge branch 'development' into less-shell-scripts
2020-05-31 18:49:51 +02:00
421b8f4268
documented function interfaces
2020-05-30 17:31:50 +02:00
0fe450a033
Merge branch 'misc-improvements' into less-shell-scripts
2020-05-27 17:40:13 +02:00
31f72aa912
handle min/mid/max eigenvalues/vectors separately
...
storing as matrix/vector is not favorable for paraview and in many
cases, either min or max are of interest only
2020-05-27 17:39:46 +02:00
908788271a
Merge branch 'misc-improvements' into less-shell-scripts
2020-05-26 07:24:03 +02:00
7f09c90c7d
different h5py versions seem to throw different errors
2020-05-26 06:39:11 +02:00
6f7c7005b0
bugfix:
...
- proper overwrite
- no out of bounds error for empty time selection (just pick nothin)
2020-05-25 23:54:06 +02:00
d6877da2b6
single source of truth
2020-05-25 20:15:45 +02:00
d9d089c359
avoid repetition and do correct encode/decode
2020-05-25 20:13:57 +02:00
5d0a2aac8f
polishing reporting
2020-05-25 20:13:57 +02:00
b9e16ea951
overwriting datasets makes sense in special cases
...
but prevent user from accidently doing that and store the information
2020-05-25 20:13:57 +02:00
248f199a7b
track creation time
2020-05-25 18:51:10 +02:00
b1b8d02320
typo
2020-05-25 16:41:23 +02:00
9d7158b51a
Merge branch 'misc-improvements' of magit1.mpie.de:/damask/DAMASK into misc-improvements
2020-05-25 16:40:23 +02:00
f07eaf19d0
fixed broadcasting + corresponding test
2020-05-25 16:37:08 +02:00
784d6d09d9
cleaning
2020-05-25 15:55:38 +02:00
dad7c7a2a0
Merge branch 'vectorize_rotation' into misc-improvements
2020-05-25 15:50:03 +02:00
3e2cbef780
Merge remote-tracking branch 'origin/development' into vectorize_rotation
2020-05-25 15:46:27 +02:00
77b68ab86f
using rotation class for rotations
2020-05-25 09:39:39 +02:00
39505507f1
not needed anymore
2020-05-25 08:07:12 +02:00
17aa3c00dc
more tests
2020-05-24 22:52:00 +02:00
296308e11e
fix for rotation around 90 deg
...
more tests
2020-05-24 20:52:19 +02:00
34adefd4ca
simplified
2020-05-24 18:30:45 +02:00
594fcb2b72
seems more appropriate
2020-05-24 15:10:53 +02:00
3231a49107
centralize functionality
2020-05-24 09:39:58 +02:00
a3d9520c4b
polishing
2020-05-23 15:54:28 +02:00
0549e33a00
vectorized/fast
2020-05-23 08:38:57 +02:00
7bd681a5ed
very simple test
2020-05-22 19:04:02 +02:00
b33de48528
testing broadcasting
2020-05-22 15:12:37 +02:00
23b1381eaf
give credit
2020-05-21 11:30:25 +02:00
16f30a10d0
polishing
2020-05-20 23:50:08 +02:00
353fd3ceb6
more tests
...
now 95% test coverage of Rotation class
2020-05-20 19:16:31 +02:00
Martin Diehl