223031012
/
DAMASK_EICMD
mirror of https://github.com/achalhp/DAMASK_EICMD.git
1
0
Fork 0
Code Issues Projects Releases Wiki Activity

simplified

This commit is contained in:
Martin Diehl 2023-12-04 22:16:31 +01:00
parent 213e8aa4be
commit ffd3cfe951
1 changed files with 44 additions and 43 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

87
python/damask/_result.py
View File

@ -1957,6 +1957,10 @@ class Result:
else: else:
obj.attrs.create(name,data) obj.attrs.create(name,data)
def create_and_open(obj,name):
obj.create_group(name)
return obj[name]
if self.N_constituents != 1 or not self.structured: if self.N_constituents != 1 or not self.structured:
raise TypeError('DREAM3D output requires structured grid with single constituent.') raise TypeError('DREAM3D output requires structured grid with single constituent.')
@ -1994,32 +1998,30 @@ class Result:
for g in ['DataContainerBundles','Pipeline']: # empty groups (needed) for g in ['DataContainerBundles','Pipeline']: # empty groups (needed)
o.create_group(g) o.create_group(g)
data_container_label = 'DataContainers/SyntheticVolumeDataContainer' data_container = create_and_open(o,'DataContainers/SyntheticVolumeDataContainer')
cell_data_label = data_container_label + '/CellData' cell = create_and_open(data_container,'CellData')
o[cell_data_label + '/Phases'] = np.reshape(phase_ID_array,tuple(np.flip(self.cells))+(1,)) cell['Phases'] = np.reshape(phase_ID_array,tuple(np.flip(self.cells))+(1,))
o[cell_data_label + '/EulerAngles'] = cell_orientation.reshape(tuple(np.flip(self.cells))+(3,)) cell['EulerAngles'] = cell_orientation.reshape(tuple(np.flip(self.cells))+(3,))
o[cell_data_label].attrs['AttributeMatrixType'] = np.array([3],np.uint32) add_attribute(cell,'AttributeMatrixType',np.array([3],np.uint32))
o[cell_data_label].attrs['TupleDimensions'] = np.array(self.cells,np.uint64) add_attribute(cell,'TupleDimensions', np.array(self.cells,np.uint64))
# Common Attributes for groups in CellData # Common Attributes for groups in CellData
for dataset in ['/Phases','/EulerAngles']: for dataset in ['Phases','EulerAngles']:
add_attribute(o[cell_data_label + dataset],'DataArrayVersion',np.array([2],np.int32)) add_attribute(cell[dataset],'DataArrayVersion',np.array([2],np.int32))
add_attribute(o[cell_data_label + dataset],'Tuple Axis Dimensions','x={},y={},z={}'.format(*np.array(self.cells))) add_attribute(cell[dataset],'Tuple Axis Dimensions','x={},y={},z={}'.format(*np.array(self.cells)))
add_attribute(cell[dataset],'TupleDimensions', np.array(self.cells,np.uint64))
# phase attributes # phase attributes
add_attribute(o[cell_data_label + '/Phases'], 'ComponentDimensions', np.array([1],np.uint64)) add_attribute(cell['Phases'], 'ComponentDimensions', np.array([1],np.uint64))
add_attribute(o[cell_data_label + '/Phases'], 'ObjectType', 'DataArray<int32_t>') add_attribute(cell['Phases'], 'ObjectType', 'DataArray<int32_t>')
add_attribute(o[cell_data_label + '/Phases'], 'TupleDimensions', np.array(self.cells,np.uint64))
# Eulers attributes # Eulers attributes
add_attribute(o[cell_data_label + '/EulerAngles'], 'ComponentDimensions', np.array([3],np.uint64)) add_attribute(cell['EulerAngles'], 'ComponentDimensions', np.array([3],np.uint64))
add_attribute(o[cell_data_label + '/EulerAngles'], 'ObjectType', 'DataArray<float>') add_attribute(cell['EulerAngles'], 'ObjectType', 'DataArray<float>')
add_attribute(o[cell_data_label + '/EulerAngles'], 'TupleDimensions', np.array(self.cells,np.uint64))
# Create EnsembleAttributeMatrix cell_ensemble = create_and_open(data_container,'CellEnsembleData')
ensemble_label = data_container_label + '/CellEnsembleData'
# Map to DREAM.3D IDs # Map to DREAM.3D IDs
crystal_structure = [999] crystal_structure = [999]
@ -2031,45 +2033,44 @@ class Result:
elif lattice_dict[label] in ['tI']: elif lattice_dict[label] in ['tI']:
crystal_structure.append(8) crystal_structure.append(8)
o[ensemble_label + '/CrystalStructures'] = np.array(crystal_structure,np.uint32).reshape(-1,1) cell_ensemble['CrystalStructures'] = np.array(crystal_structure,np.uint32).reshape(-1,1)
o[ensemble_label + '/PhaseTypes'] = np.array([999] + [0]*len(self.phases),np.uint32).reshape(-1,1) cell_ensemble['PhaseTypes'] = np.array([999] + [0]*len(self.phases),np.uint32).reshape(-1,1)
phase_name_list = ['Unknown Phase Type'] phase_name_list = ['Unknown Phase Type'] + [p for p in self.visible['phases']]
phase_name_list.extend(i for i in self.visible['phases'])
tid = h5py.h5t.C_S1.copy() tid = h5py.h5t.C_S1.copy()
tid.set_size(h5py.h5t.VARIABLE) tid.set_size(h5py.h5t.VARIABLE)
tid.set_cset(h5py.h5t.CSET_ASCII) tid.set_cset(h5py.h5t.CSET_ASCII)
o[ensemble_label].create_dataset(name='PhaseName',data = phase_name_list, dtype=h5py.Datatype(tid)) cell_ensemble.create_dataset(name='PhaseName',data = phase_name_list, dtype=h5py.Datatype(tid))
# Attributes Ensemble Matrix # Attributes Ensemble Matrix
o[ensemble_label].attrs['AttributeMatrixType'] = np.array([11],np.uint32) cell_ensemble.attrs['AttributeMatrixType'] = np.array([11],np.uint32)
o[ensemble_label].attrs['TupleDimensions'] = np.array([len(self.phases) + 1], np.uint64) cell_ensemble.attrs['TupleDimensions'] = np.array([len(self.phases) + 1], np.uint64)
# Attributes for data in Ensemble matrix # Attributes for data in Ensemble matrix
for group in ['CrystalStructures','PhaseTypes']: for group in ['CrystalStructures','PhaseTypes']:
add_attribute(o[ensemble_label+'/'+group], 'ComponentDimensions', np.array([1],np.uint64)) add_attribute(cell_ensemble[group], 'ComponentDimensions', np.array([1],np.uint64))
add_attribute(o[ensemble_label+'/'+group], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}') add_attribute(cell_ensemble[group], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}')
add_attribute(o[ensemble_label+'/'+group], 'DataArrayVersion', np.array([2],np.int32)) add_attribute(cell_ensemble[group], 'DataArrayVersion', np.array([2],np.int32))
add_attribute(o[ensemble_label+'/'+group], 'ObjectType', 'DataArray<uint32_t>') add_attribute(cell_ensemble[group], 'ObjectType', 'DataArray<uint32_t>')
add_attribute(o[ensemble_label+'/'+group], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64)) add_attribute(cell_ensemble[group], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64))
add_attribute(o[ensemble_label+'/PhaseName'], 'ComponentDimensions', np.array([1],np.uint64)) add_attribute(cell_ensemble['PhaseName'], 'ComponentDimensions', np.array([1],np.uint64))
add_attribute(o[ensemble_label+'/PhaseName'], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}') add_attribute(cell_ensemble['PhaseName'], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}')
add_attribute(o[ensemble_label+'/PhaseName'], 'DataArrayVersion', np.array([2],np.int32)) add_attribute(cell_ensemble['PhaseName'], 'DataArrayVersion', np.array([2],np.int32))
add_attribute(o[ensemble_label+'/PhaseName'], 'ObjectType', 'StringDataArray') add_attribute(cell_ensemble['PhaseName'], 'ObjectType', 'StringDataArray')
add_attribute(o[ensemble_label+'/PhaseName'], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64)) add_attribute(cell_ensemble['PhaseName'], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64))
# Create geometry info # Create geometry info
geom_label = data_container_label + '/_SIMPL_GEOMETRY' geom = create_and_open(data_container,'_SIMPL_GEOMETRY')
o[geom_label + '/DIMENSIONS'] = np.int64(np.array(self.cells)) geom['DIMENSIONS'] = np.int64(np.array(self.cells))
o[geom_label + '/ORIGIN'] = np.float32(np.zeros(3)) geom['ORIGIN'] = np.float32(np.zeros(3))
o[geom_label + '/SPACING'] = np.float32(dx) geom['SPACING'] = np.float32(dx)
add_attribute(o[geom_label], 'GeometryName', 'ImageGeometry') add_attribute(geom, 'GeometryName', 'ImageGeometry')
add_attribute(o[geom_label], 'GeometryTypeName', 'ImageGeometry') add_attribute(geom, 'GeometryTypeName', 'ImageGeometry')
add_attribute(o[geom_label], 'GeometryType', np.array([0],np.uint32)) add_attribute(geom, 'GeometryType', np.array([0],np.uint32))
add_attribute(o[geom_label], 'SpatialDimensionality', np.array([3],np.uint32)) add_attribute(geom, 'SpatialDimensionality', np.array([3],np.uint32))
add_attribute(o[geom_label], 'UnitDimensionality', np.array([3],np.uint32)) add_attribute(geom, 'UnitDimensionality', np.array([3],np.uint32))
def export_DADF5(self, def export_DADF5(self,