removing functionality related to deprecated 'geom' format

This commit is contained in:
Martin Diehl 2020-10-10 09:41:11 +02:00
parent 00e2128e03
commit ffabeacbcb
57 changed files with 534 additions and 1212 deletions

View File

@ -148,4 +148,4 @@ for name in filenames:
geom = damask.Geom(microstructure,size,origin,comments=header)
damask.util.croak(geom)
geom.save_ASCII(os.path.splitext(name)[0]+'.geom',compress=False)
geom.save_ASCII(os.path.splitext(name)[0]+'.geom')

View File

@ -66,4 +66,4 @@ geom=damask.Geom.from_minimal_surface(options.grid,options.size,options.type,opt
options.periods,options.microstructure)
damask.util.croak(geom)
geom.save_ASCII(sys.stdout if name is None else name,compress=False)
geom.save_ASCII(sys.stdout if name is None else name)

View File

@ -138,4 +138,4 @@ geom = damask.Geom(microstructure.reshape(grid),
comments=header)
damask.util.croak(geom)
geom.save_ASCII(sys.stdout if name is None else name,compress=False)
geom.save_ASCII(sys.stdout if name is None else name)

View File

@ -100,4 +100,4 @@ for name in filenames:
comments=header)
damask.util.croak(geom)
geom.save_ASCII(sys.stdout if name is None else os.path.splitext(name)[0]+'.geom',compress=False)
geom.save_ASCII(sys.stdout if name is None else os.path.splitext(name)[0]+'.geom')

View File

@ -174,4 +174,4 @@ for name in filenames:
origin = geom.origin,
comments = geom.comments + [scriptID + ' ' + ' '.join(sys.argv[1:])],
)\
.save_ASCII(sys.stdout if name is None else name,compress=False)
.save_ASCII(sys.stdout if name is None else name)

View File

@ -399,13 +399,12 @@ class Geom:
def save(self,fname,compress=True):
"""
Generates vtk rectilinear grid.
Generate vtk rectilinear grid.
Parameters
----------
fname : str, optional
Filename to write. If no file is given, a string is returned.
Valid extension is .vtr, it will be appended if not given.
fname : str or or pathlib.Path
Filename to write. Valid extension is .vtr, it will be appended if not given.
compress : bool, optional
Compress with zlib algorithm. Defaults to True.
@ -417,9 +416,9 @@ class Geom:
v.save(fname if str(fname).endswith('.vtr') else str(fname)+'.vtr',parallel=False,compress=compress)
def save_ASCII(self,fname,compress=None):
def save_ASCII(self,fname):
"""
Writes a geom file.
Write a geom file.
Parameters
----------
@ -436,57 +435,11 @@ class Geom:
'homogenization 1',
]
grid = self.grid
if compress is None:
plain = grid.prod()/self.N_materials < 250
else:
plain = not compress
if plain:
format_string = '%g' if self.material.dtype in np.sctypes['float'] else \
'%{}i'.format(1+int(np.floor(np.log10(np.nanmax(self.material)))))
np.savetxt(fname,
self.material.reshape([grid[0],np.prod(grid[1:])],order='F').T,
header='\n'.join(header), fmt=format_string, comments='')
else:
try:
f = open(fname,'w')
except TypeError:
f = fname
compressType = None
former = start = -1
reps = 0
for current in self.material.flatten('F'):
if abs(current - former) == 1 and (start - current) == reps*(former - current):
compressType = 'to'
reps += 1
elif current == former and start == former:
compressType = 'of'
reps += 1
else:
if compressType is None:
f.write('\n'.join(header)+'\n')
elif compressType == '.':
f.write(f'{former}\n')
elif compressType == 'to':
f.write(f'{start} to {former}\n')
elif compressType == 'of':
f.write(f'{reps} of {former}\n')
compressType = '.'
start = current
reps = 1
former = current
if compressType == '.':
f.write(f'{former}\n')
elif compressType == 'to':
f.write(f'{start} to {former}\n')
elif compressType == 'of':
f.write(f'{reps} of {former}\n')
format_string = '%g' if self.material.dtype in np.sctypes['float'] else \
'%{}i'.format(1+int(np.floor(np.log10(np.nanmax(self.material)))))
np.savetxt(fname,
self.material.reshape([self.grid[0],np.prod(self.grid[1:])],order='F').T,
header='\n'.join(header), fmt=format_string, comments='')
def show(self):
@ -498,7 +451,7 @@ class Geom:
def add_primitive(self,dimension,center,exponent,
fill=None,R=Rotation(),inverse=False,periodic=True):
"""
Inserts a primitive geometric object at a given position.
Insert a primitive geometric object at a given position.
Parameters
----------

View File

@ -3,7 +3,7 @@
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View File

@ -3,7 +3,7 @@
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View File

@ -3,7 +3,7 @@
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View File

@ -3,7 +3,7 @@
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View File

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@ -3,7 +3,7 @@
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grid a 8 b 5 c 4
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
40 39 38 37 36 35 34 33
32 31 30 29 28 27 26 25
24 23 22 21 20 19 18 17
16 15 14 13 12 11 10 9
8 7 6 5 4 3 2 1
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
41 40 39 38 37 36 35 34
33 32 31 30 29 28 27 26
25 24 23 22 21 20 19 18
17 16 15 14 13 12 11 10
9 8 7 6 5 4 3 2
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
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View File

@ -1,25 +0,0 @@
4 header
grid a 8 b 5 c 4
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1
9 8 7 6 5 4 3 2
17 16 15 14 13 12 11 10
25 24 23 22 21 20 19 18
33 32 31 30 29 28 27 26
41 40 39 38 37 36 35 34
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
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View File

@ -1,25 +0,0 @@
4 header
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size x 8e-06 y 5e-06 z 4e-06
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homogenization 1
33 34 35 36 37 38 39 40
25 26 27 28 29 30 31 32
17 18 19 20 21 22 23 24
9 10 11 12 13 14 15 16
1 2 3 4 5 6 7 8
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
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26 27 28 29 30 31 32 33
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10 11 12 13 14 15 16 17
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homogenization 1
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32 31 30 29 28 27 26 25
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16 15 14 13 12 11 10 9
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2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
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View File

@ -32,6 +32,10 @@ def reference_dir(reference_dir_base):
class TestGeom:
@pytest.fixture(autouse=True)
def _execution_stamp(self, execution_stamp):
print('patched damask.util.execution_stamp')
def test_diff_equal(self,default):
assert str(default.diff(default)) == ''
@ -95,10 +99,10 @@ class TestGeom:
)
def test_mirror(self,default,update,reference_dir,directions,reflect):
modified = default.mirror(directions,reflect)
tag = f'directions={"-".join(directions)}_reflect={reflect}'
reference = reference_dir/f'mirror_{tag}.geom'
if update: modified.save_ASCII(reference)
assert geom_equal(Geom.load_ASCII(reference),
tag = f'directions_{"-".join(directions)}+reflect_{reflect}'
reference = reference_dir/f'mirror_{tag}.vtr'
if update: modified.save(reference)
assert geom_equal(Geom.load(reference),
modified)
@ -117,10 +121,10 @@ class TestGeom:
)
def test_flip(self,default,update,reference_dir,directions):
modified = default.flip(directions)
tag = f'directions={"-".join(directions)}'
reference = reference_dir/f'flip_{tag}.geom'
if update: modified.save_ASCII(reference)
assert geom_equal(Geom.load_ASCII(reference),
tag = f'directions_{"-".join(directions)}'
reference = reference_dir/f'flip_{tag}.vtr'
if update: modified.save(reference)
assert geom_equal(Geom.load(reference),
modified)
@ -163,10 +167,10 @@ class TestGeom:
)
def test_scale(self,default,update,reference_dir,grid):
modified = default.scale(grid)
tag = f'grid={util.srepr(grid,"-")}'
reference = reference_dir/f'scale_{tag}.geom'
if update: modified.save_ASCII(reference)
assert geom_equal(Geom.load_ASCII(reference),
tag = f'grid_{util.srepr(grid,"-")}'
reference = reference_dir/f'scale_{tag}.vtr'
if update: modified.save(reference)
assert geom_equal(Geom.load(reference),
modified)
@ -206,10 +210,10 @@ class TestGeom:
[0.0,32.0,240.0]])
def test_rotate(self,default,update,reference_dir,Eulers):
modified = default.rotate(Rotation.from_Eulers(Eulers,degrees=True))
tag = f'Eulers={util.srepr(Eulers,"-")}'
reference = reference_dir/f'rotate_{tag}.geom'
if update: modified.save_ASCII(reference)
assert geom_equal(Geom.load_ASCII(reference),
tag = f'Eulers_{util.srepr(Eulers,"-")}'
reference = reference_dir/f'rotate_{tag}.vtr'
if update: modified.save(reference)
assert geom_equal(Geom.load(reference),
modified)