adopted use of general damask package
This commit is contained in:
Philip Eisenlohr
parent
a8dece8694
commit
fb7adf7b89
|
|
@ -1,6 +1,6 @@
|
|||
#!/usr/bin/python
|
||||
|
||||
import os,re,sys,math,string,damask_tools
|
||||
import os,re,sys,math,string,damask
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
# -----------------------------
|
||||
|
|
@ -67,7 +67,7 @@ else:
|
|||
for file in files:
|
||||
if file['name'] != 'STDIN': print file['name']
|
||||
|
||||
table = damask_tools.ASCII_TABLE(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table.head_read() # read ASCII header info
|
||||
table.info_append(string.replace('$Id: addNorm.py 1118 2011-11-23 14:54:53Z MPIE\p.eisenlohr $','\n','\\n') + \
|
||||
'\t' + ' '.join(sys.argv[1:]))
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
#!/usr/bin/python
|
||||
|
||||
import os,re,sys,math,numpy,string,damask_tools
|
||||
import os,re,sys,math,numpy,string,damask
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
# -----------------------------
|
||||
|
|
@ -75,7 +75,7 @@ else:
|
|||
for file in files:
|
||||
if file['name'] != 'STDIN': print file['name']
|
||||
|
||||
table = damask_tools.ASCII_TABLE(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table.head_read() # read ASCII header info
|
||||
table.info_append(string.replace('$Id$','\n','\\n') + \
|
||||
'\t' + ' '.join(sys.argv[1:]))
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
#!/usr/bin/python
|
||||
|
||||
import os,re,sys,math,string,damask_tools
|
||||
import os,re,sys,math,string,damask
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
# -----------------------------
|
||||
|
|
@ -79,7 +79,7 @@ else:
|
|||
for file in files:
|
||||
if file['name'] != 'STDIN': print file['name']
|
||||
|
||||
table = damask_tools.ASCII_TABLE(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table.head_read() # read ASCII header info
|
||||
table.info_append(string.replace('$Id$','\n','\\n') + \
|
||||
'\t' + ' '.join(sys.argv[1:]))
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
#!/usr/bin/python
|
||||
|
||||
import os,re,sys,math,numpy,string
|
||||
import os,re,sys,math,numpy,string,damask
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
# -----------------------------
|
||||
|
|
@ -31,7 +31,7 @@ def Mises(what,tensor):
|
|||
{
|
||||
'stress': 3.0/2.0,
|
||||
'strain': 2.0/3.0,
|
||||
}[what])
|
||||
}[what.lower()])
|
||||
|
||||
|
||||
# --------------------------------------------------------------------
|
||||
|
|
@ -45,14 +45,11 @@ Add vonMises equivalent values for symmetric part of requested strains and/or st
|
|||
)
|
||||
|
||||
|
||||
parser.add_option('-m','--memory', dest='memory', action='store_true', \
|
||||
help='load complete file into memory [%default]')
|
||||
parser.add_option('-e','--strain', dest='strain', action='extend', type='string', \
|
||||
help='heading(s) of columns containing strain tensors')
|
||||
parser.add_option('-s','--stress', dest='stress', action='extend', type='string', \
|
||||
help='heading(s) of columns containing stress tensors')
|
||||
|
||||
parser.set_defaults(memory = False)
|
||||
parser.set_defaults(strain = [])
|
||||
parser.set_defaults(stress = [])
|
||||
|
||||
|
|
@ -86,30 +83,12 @@ else:
|
|||
# ------------------------------------------ loop over input files ---------------------------------------
|
||||
|
||||
for file in files:
|
||||
print file['name']
|
||||
if file['name'] != 'STDIN': print file['name']
|
||||
|
||||
# get labels by either read the first row, or - if keyword header is present - the last line of the header
|
||||
|
||||
firstline = file['input'].readline()
|
||||
m = re.search('(\d+)\s*head', firstline.lower())
|
||||
if m:
|
||||
headerlines = int(m.group(1))
|
||||
passOn = [file['input'].readline() for i in range(1,headerlines)]
|
||||
headers = file['input'].readline().split()
|
||||
else:
|
||||
headerlines = 1
|
||||
passOn = []
|
||||
headers = firstline.split()
|
||||
|
||||
if options.memory:
|
||||
data = file['input'].readlines()
|
||||
else:
|
||||
data = []
|
||||
|
||||
for i,l in enumerate(headers):
|
||||
if l.startswith('1_'):
|
||||
if re.match('\d+_',l[2:]) or i == len(headers)-1 or not headers[i+1].endswith(l[2:]):
|
||||
headers[i] = l[2:]
|
||||
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table.head_read() # read ASCII header info
|
||||
table.info_append(string.replace('$Id$','\n','\\n') + \
|
||||
'\t' + ' '.join(sys.argv[1:]))
|
||||
|
||||
active = {}
|
||||
column = {}
|
||||
|
|
@ -119,57 +98,37 @@ for file in files:
|
|||
for label in info['label']:
|
||||
key = {True :'1_%s',
|
||||
False:'%s' }[info['len']>1]%label
|
||||
if key not in headers:
|
||||
if key not in table.labels:
|
||||
sys.stderr.write('column %s not found...\n'%key)
|
||||
else:
|
||||
if datatype not in active: active[datatype] = []
|
||||
if datatype not in column: column[datatype] = {}
|
||||
active[datatype].append(label)
|
||||
column[datatype][label] = headers.index(key)
|
||||
head.append('Mises(%s)'%label)
|
||||
column[datatype][label] = table.labels.index(key) # remember columns of requested data
|
||||
table.labels_append('Mises(%s)'%label) # extend ASCII header with new labels
|
||||
|
||||
# ------------------------------------------ assemble header ---------------------------------------
|
||||
|
||||
output = '%i\theader'%(headerlines+1) + '\n' + \
|
||||
''.join(passOn) + \
|
||||
string.replace('$Id$','\n','\\n')+ '\t' + \
|
||||
' '.join(sys.argv[1:]) + '\n' + \
|
||||
'\t'.join(headers + head) + '\n' # build extended header
|
||||
table.head_write()
|
||||
|
||||
if not options.memory:
|
||||
file['output'].write(output)
|
||||
output = ''
|
||||
# ------------------------------------------ process data ---------------------------------------
|
||||
|
||||
# ------------------------------------------ read file ---------------------------------------
|
||||
while table.data_read(): # read next data line of ASCII table
|
||||
|
||||
for line in {True : data,
|
||||
False : file['input']}[options.memory]:
|
||||
items = line.split()[:len(headers)]
|
||||
if len(items) < len(headers):
|
||||
continue
|
||||
for datatype,labels in active.items(): # loop over vector,tensor
|
||||
for label in labels: # loop over all requested norms
|
||||
table.data_append(Mises(datatype,
|
||||
numpy.array(map(float,items[column[datatype][label]:
|
||||
column[datatype][label]+datainfo[datatype]['len']]),'d').reshape(3,3)))
|
||||
|
||||
output += '\t'.join(items)
|
||||
|
||||
for datatype,labels in active.items():
|
||||
for label in labels:
|
||||
theMises = Mises(datatype,
|
||||
numpy.array(map(float,items[column[datatype][label]:
|
||||
column[datatype][label]+datainfo[datatype]['len']]),'d').reshape(3,3))
|
||||
output += '\t%f'%theMises
|
||||
|
||||
output += '\n'
|
||||
|
||||
if not options.memory:
|
||||
file['output'].write(output)
|
||||
output = ''
|
||||
|
||||
file['input'].close()
|
||||
table.data_write() # output processed line
|
||||
|
||||
# ------------------------------------------ output result ---------------------------------------
|
||||
|
||||
if options.memory:
|
||||
file['output'].write(output)
|
||||
table.output_flush() # just in case of buffered ASCII table
|
||||
|
||||
file['input'].close() # close input ASCII table
|
||||
if file['name'] != 'STDIN':
|
||||
file['output'].close
|
||||
os.rename(file['name']+'_tmp',file['name'])
|
||||
file['output'].close # close output ASCII table
|
||||
os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new
|
||||
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
#!/usr/bin/python
|
||||
|
||||
import os,re,sys,math,string,damask_tools
|
||||
import os,re,sys,math,string,damask
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
# -----------------------------
|
||||
|
|
@ -79,7 +79,7 @@ else:
|
|||
for file in files:
|
||||
if file['name'] != 'STDIN': print file['name']
|
||||
|
||||
table = damask_tools.ASCII_TABLE(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
|
||||
table.head_read() # read ASCII header info
|
||||
table.info_append(string.replace('$Id$','\n','\\n') + \
|
||||
'\t' + ' '.join(sys.argv[1:]))
|
||||
|
|
|
|||
|
|
@ -2,10 +2,9 @@
|
|||
|
||||
# Makes postprocessing routines acessible from everywhere.
|
||||
|
||||
import os,sys,glob,string
|
||||
import os,sys,glob,string,damask
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
import damask_tools
|
||||
|
||||
# -----------------------------
|
||||
class extendableOption(Option):
|
||||
|
|
@ -52,10 +51,9 @@ else:
|
|||
acml_subdir='%s64/lib'%options.compiler
|
||||
|
||||
|
||||
#getting pathinfo
|
||||
damask_variables = damask_tools.DAMASK_TOOLS()
|
||||
baseDir = damask_variables.relPath('processing/')
|
||||
codeDir = damask_variables.relPath('code/')
|
||||
damaskEnv = damask.Environment()
|
||||
baseDir = damaskEnv.relPath('processing/')
|
||||
codeDir = damaskEnv.relPath('code/')
|
||||
|
||||
#define ToDo list
|
||||
bin_link = { \
|
||||
|
|
@ -101,7 +99,7 @@ compile = { \
|
|||
|
||||
execute = { \
|
||||
'postMath' : [
|
||||
'rm %s'%(os.path.join(damask_variables.relPath('lib/'),'DAMASK.so')),
|
||||
'rm %s'%(os.path.join(damaskEnv.relPath('lib/'),'DAMASK.so')),
|
||||
# The following command is used to compile math.f90 and make the functions defined in DAMASK_math.pyf
|
||||
# available for python in the module DAMASK_math.so
|
||||
# It uses the fortran wrapper f2py that is included in the numpy package to construct the
|
||||
|
|
@ -112,9 +110,9 @@ execute = { \
|
|||
'-c --fcompiler=%s '%(f2py_compiler) +\
|
||||
'%s ' %(os.path.join(codeDir,'DAMASK2Python_helper.f90'))+\
|
||||
'%s ' %(os.path.join(codeDir,'math.f90'))+\
|
||||
'%s ' %(os.path.join(damask_variables.pathInfo['fftw'],'libfftw3.a'))+\
|
||||
'%s' %(os.path.join(damask_variables.pathInfo['acml'],acml_subdir,'libacml.a'),
|
||||
'mv %s %s' %(os.path.join(codeDir,'DAMASK.so'),damask_variables.relPath('lib/')),
|
||||
'%s ' %(os.path.join(damaskEnv.pathInfo['fftw'],'libfftw3.a'))+\
|
||||
'%s' %(os.path.join(damaskEnv.pathInfo['acml'],acml_subdir,'libacml.a')),
|
||||
'mv %s %s' %(os.path.join(codeDir,'DAMASK.so'),damaskEnv.relPath('lib/')),
|
||||
]
|
||||
}
|
||||
|
||||
|
|
@ -135,7 +133,7 @@ os.chdir(codeDir) # needed for compilation with gfortran and f
|
|||
for tasks in execute:
|
||||
for cmd in execute[tasks]:
|
||||
os.system(cmd)
|
||||
os.chdir(damask_variables.relPath('processing/setup/'))
|
||||
os.chdir(damaskEnv.relPath('processing/setup/'))
|
||||
|
||||
modules = glob.glob('*.mod')
|
||||
for module in modules:
|
||||
|
|
@ -146,16 +144,11 @@ for dir in bin_link:
|
|||
for file in bin_link[dir]:
|
||||
src = os.path.abspath(os.path.join(baseDir,dir,file))
|
||||
if (file == ''):
|
||||
sym_link = os.path.abspath(os.path.join(damask_variables.binDir(),dir))
|
||||
sym_link = os.path.abspath(os.path.join(damaskEnv.binDir(),dir))
|
||||
else:
|
||||
sym_link = os.path.abspath(os.path.join(damask_variables.binDir(),os.path.splitext(file)[0]))
|
||||
sym_link = os.path.abspath(os.path.join(damaskEnv.binDir(),os.path.splitext(file)[0]))
|
||||
print sym_link,'-->',src
|
||||
if os.path.lexists(sym_link):
|
||||
os.remove(sym_link)
|
||||
os.symlink(src,sym_link)
|
||||
|
||||
#--- uncomment next lines to remove your old symbolic links in ~/bin
|
||||
#old_link=sym_link.replace(damask_root,os.getenv('HOME'))
|
||||
#if os.path.lexists(old_link):
|
||||
# os.remove(old_link)
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue