Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
This commit is contained in:
Martin Diehl
commit
f992e420e3
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! $Id$
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! -*- f90 -*-
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!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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! Note: the syntax of this file is case sensitive.
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!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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! This file was auto-generated with f2py (version:2_5972).
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! See http://cens.ioc.ee/projects/f2py2e/
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!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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! The auto-generated file is quite heavily corrected
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! For modifying, notice the following hints:
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! - if the dimension of an array depend on a array that is itself an input, use the C-Syntax: (1) becomes [0] etc.
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! - be sure that the precision defined is integer, real*8, and complex*16
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!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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python module core ! in
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interface ! in :core
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module prec
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subroutine prec_init
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end subroutine prec_init
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end module prec
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module damask_interface ! in :damask_interface:DAMASK_spectral_interface.f90
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subroutine DAMASK_interface_init(loadcaseParameterIn,geometryParameterIn) ! in :damask_interface:DAMASK_spectral_interface.f90
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character(len=1024), intent(in) :: loadcaseParameterIn
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character(len=1024), intent(in) :: geometryParameterIn
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end subroutine DAMASK_interface_init
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end module damask_interface
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module io
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subroutine IO_init
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end subroutine IO_init
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end module io
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module numerics
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subroutine numerics_init
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end subroutine numerics_init
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end module numerics
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module debug
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subroutine debug_init
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end subroutine debug_init
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end module debug
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module math ! in :math:math.f90
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subroutine math_init
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end subroutine math_init
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function math_tensorAvg(field) ! in :math:math.f90
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! input variables
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real*8 dimension(:,:,:,:,:), intent(in), :: field
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! function definition
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real*8 dimension(3,3), :: math_tensorAvg
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end function math_tensorAvg
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end module math
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module fesolving
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subroutine FE_init
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end subroutine FE_init
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end module fesolving
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module mesh ! in :mesh:mesh.f90
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subroutine mesh_init(ip,element)
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integer, parameter :: ip = 1
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integer, parameter :: element = 1
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end subroutine mesh_init
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function mesh_nodesAroundCentres(gDim,Favg,centres) ! in :mesh:mesh.f90
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real*8, dimension(:,:,:,:), intent(in) :: centres
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real*8, dimension(3), intent(in) :: gDim
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real*8, dimension(3,3), intent(in) :: Favg
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real*8, dimension(3,size(centres,2)+1,size(centres,3)+1,size(centres,4)+1), depend(centres) :: mesh_nodesAroundCentres
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real*8, dimension(3,size(centres,2)+1,size(centres,3)+1,size(centres,4)+1), depend(centres) :: wrappedCentres
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end function mesh_nodesAroundCentres
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function mesh_deformedCoordsFFT(gDim,F,FavgIn,scalingIn) ! in :mesh:mesh.f90
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real*8, dimension(:,:,:,:,:), intent(in) :: F
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real*8, dimension(3), intent(in) :: gDim
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real*8, dimension(3,3), intent(in), optional :: FavgIn = -1.0
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real*8, dimension(3), intent(in), optional :: scalingIn = -1.0
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real*8, dimension(3,size(F,3),size(F,4),size(F,5)), depend(F) :: mesh_deformedCoordsFFT
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end function mesh_deformedCoordsFFT
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function mesh_volumeMismatch(gDim,F,nodes) ! in :mesh:mesh.f90
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real*8, dimension(:,:,:,:,:), intent(in) :: F
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real*8, dimension(:,:,:,:), intent(in) :: nodes
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real*8, dimension(3), intent(in) :: gDim
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real*8, dimension(size(F,3),size(F,4),size(F,5)), depend(F) :: mesh_volumeMismatch
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end function mesh_volumeMismatch
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function mesh_shapeMismatch(gDim,F,nodes,centres) ! in :mesh:mesh.f90
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real*8, dimension(:,:,:,:,:), intent(in) :: F
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real*8, dimension(:,:,:,:), intent(in) :: nodes
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real*8, dimension(:,:,:,:), intent(in) :: centres
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real*8, dimension(3), intent(in) :: gDim
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real*8, dimension(size(F,3),size(F,4),size(F,5)), depend(F) :: mesh_shapeMismatch
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end function mesh_shapeMismatch
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function mesh_init_postprocessing(filepath) ! in :mesh:mesh.f90
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character(len=*), intent(in) :: filepath
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end function mesh_init_postprocessing
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function mesh_build_cellnodes(nodes,Ncellnodes) ! in :mesh:mesh.f90
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integer, intent(in) :: Ncellnodes
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real*8, dimension(3,:), intent(in) :: nodes
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real*8, dimension(3,Ncellnodes), depend(Ncellnodes) :: mesh_build_cellnodes
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end function mesh_build_cellnodes
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function mesh_get_Ncellnodes() ! in :mesh:mesh.f90
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integer :: mesh_get_Ncellnodes
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end function mesh_get_Ncellnodes
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function mesh_get_unitlength() ! in :mesh:mesh.f90
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real*8 :: mesh_get_unitlength
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end function mesh_get_unitlength
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function mesh_get_nodeAtIP(elemtypeFE,ip) ! in :mesh:mesh.f90
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character(len=*), intent(in) :: elemtypeFE
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integer, intent(in) :: ip
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integer :: mesh_get_nodeAtIP
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end function mesh_get_nodeAtIP
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end module mesh
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end interface
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end python module core
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@ -0,0 +1,94 @@
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[Ni_nonlocal]
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elasticity hooke
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plasticity nonlocal
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/nonlocal/
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(output) rho
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(output) rho_sgl_mobile
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(output) rho_sgl_immobile
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(output) rho_sgl_edge_pos
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(output) rho_sgl_edge_neg
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(output) rho_sgl_screw_pos
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(output) rho_sgl_screw_neg
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(output) rho_dip_edge
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(output) rho_dip_screw
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(output) rho_forest
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(output) excess_rho_edge
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(output) excess_rho_screw
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(output) accumulatedshear
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(output) shearrate
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(output) resolvedstress
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(output) resistance
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(output) velocity_edge_pos
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(output) rho_dot_gen
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(output) rho_dot_sgl2dip_edge
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(output) rho_dot_sgl2dip_screw
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(output) rho_dot_ann_ath
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(output) rho_dot_ann_the_edge
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(output) rho_dot_ann_the_screw
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(output) rho_dot_edgejogs
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(output) rho_dot_flux_edge
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(output) rho_dot_flux_screw
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(output) slipdirection.x
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(output) slipdirection.y
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(output) slipdirection.z
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(output) slipnormal.x
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(output) slipnormal.y
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(output) slipnormal.z
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(output) fluxdensity_edge_pos.x
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(output) fluxdensity_edge_pos.y
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(output) fluxdensity_edge_pos.z
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(output) fluxdensity_edge_neg.x
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(output) fluxdensity_edge_neg.y
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(output) fluxdensity_edge_neg.z
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(output) fluxdensity_screw_pos.x
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(output) fluxdensity_screw_pos.y
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(output) fluxdensity_screw_pos.z
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(output) fluxdensity_screw_neg.x
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(output) fluxdensity_screw_neg.y
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(output) fluxdensity_screw_neg.z
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lattice_structure fcc
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Nslip 12 # number of slip systems per family
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c11 246.5e9
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c12 147.3e9
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c44 124.7e9
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burgers 2.48e-10 0 0 0 # Burgers vector in m
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rhoSglEdgePos0 6e10 # Initial positive edge single dislocation density in m/m**3
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rhoSglEdgeNeg0 6e10 # Initial negative edge single dislocation density in m/m**3
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rhoSglScrewPos0 6e10 # Initial positive screw single dislocation density in m/m**3
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rhoSglScrewNeg0 6e10 # Initial negative screw single dislocation density in m/m**3
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rhoDipEdge0 0 # Initial edge dipole dislocation density in m/m**3
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rhoDipScrew0 0 # Initial screw dipole dislocation density in m/m**3
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rhoSglScatter 0
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minimumDipoleHeightEdge 2.6e-9 # 3.0e-9 # minimum distance for stable edge dipoles in m
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minimumDipoleHeightScrew 12.0e-9 # 50e-9 # minimum distance for stable screw dipoles in m
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lambda0 45 # 33 # prefactor for mean free path
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edgeMultiplication 0.1
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randomMultiplication 0
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atomicVolume 1.2e-29
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selfdiffusionPrefactor 1.9e-4 # Gottstein p.168 # prefactor for self-diffusion coefficient
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selfdiffusionEnergy 5.1e-19 # Gottstein p.168 # activation energy self-diffusion
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solidSolutionEnergy 1.8e-19 # activation energy of solid solution particles in J
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solidSolutionConcentration 5e-7 # 1e-7
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solidSolutionSize 1.0
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peierlsStressEdge 1e5 # Peierls stress for edges in Pa (per slip family)
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peierlsStressScrew 1e5 # Peierls stress for screws in Pa (per slip family)
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doublekinkWidth 10 # width of double kinks in multiples of burgers vector length b
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viscosity 1e-3 # viscosity for dislocation glide in Pa s
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p 1 # exponent for thermal barrier profile
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q 1 # exponent for thermal barrier profile
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attackFrequency 50e9 # attack frequency in Hz
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surfaceTransmissivity 1.0 # transmissivity of free surfaces for dislocation flux
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grainBoundaryTransmissivity 0.0
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aTol_rho 1e100 # absolute tolerance for dislocation density in m/m**3
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aTol_shear 1e10 # absolute tolerance for dislocation density in m/m**3
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significantRho 1e8 # dislocation density considered relevant in m/m**3
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significantN 1
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shortRangeStressCorrection 0
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CFLfactor 1.1 # safety factor for CFL flux check (numerical parameter)
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r 1
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interaction_SlipSlip 0 0 0.625 0.07 0.137 0.122 # Dislocation interaction coefficient
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linetension 0.8
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edgejog 0.01 # 0.2
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@ -11,7 +11,7 @@ scriptName = os.path.splitext(os.path.basename(__file__))[0]
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scriptID = ' '.join([scriptName,damask.version])
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scriptID = ' '.join([scriptName,damask.version])
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def mostFrequent(arr):
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def mostFrequent(arr):
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return np.argmax(np.bincount(arr))
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return np.argmax(np.bincount(arr.astype('int')))
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#--------------------------------------------------------------------------------------------------
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#--------------------------------------------------------------------------------------------------
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@ -72,7 +72,13 @@ for name in filenames:
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# --- do work ------------------------------------------------------------------------------------
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# --- do work ------------------------------------------------------------------------------------
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microstructure = ndimage.filters.generic_filter(microstructure,mostFrequent,size=(options.stencil,)*3)
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microstructure = ndimage.filters.generic_filter(microstructure,mostFrequent,size=(options.stencil,)*3).astype('int_')
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newInfo = {'microstructures': microstructure.max()}
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# --- report ---------------------------------------------------------------------------------------
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if ( newInfo['microstructures'] != info['microstructures']):
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damask.util.croak('--> microstructures: %i'%newInfo['microstructures'])
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info['microstructures'] == newInfo['microstructures']
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# --- write header ---------------------------------------------------------------------------------
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# --- write header ---------------------------------------------------------------------------------
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