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DAMASK_EICMD
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enable floating point data and corrected counting of microstructures

This commit is contained in:
Zhuowen Zhao 2016-08-24 16:05:50 -04:00
parent 5b6f41cb6b
commit f984f1ebea
1 changed files with 23 additions and 16 deletions
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39
processing/pre/geom_translate.py
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@ -30,30 +30,37 @@ parser.add_option('-s', '--substitute',
dest = 'substitute', dest = 'substitute',
action = 'extend', metavar = '<string LIST>', action = 'extend', metavar = '<string LIST>',
help = 'substitutions of microstructure indices from,to,from,to,...') help = 'substitutions of microstructure indices from,to,from,to,...')
parser.add_option('--float',
dest = 'real',
action = 'store_true',
help = 'use float input')
parser.set_defaults(origin = (0.0,0.0,0.0), parser.set_defaults(origin = (0.0,0.0,0.0),
microstructure = 0, microstructure = 0,
substitute = [], substitute = [],
real = False,
) )
(options, filenames) = parser.parse_args() (options, filenames) = parser.parse_args()
datatype = 'f' if options.real else 'i'
sub = {} sub = {}
for i in xrange(len(options.substitute)/2): # split substitution list into "from" -> "to" for i in xrange(len(options.substitute)/2): # split substitution list into "from" -> "to"
sub[int(options.substitute[i*2])] = int(options.substitute[i*2+1]) sub[int(options.substitute[i*2])] = int(options.substitute[i*2+1])
# --- loop over input files ------------------------------------------------------------------------- # --- loop over input files ----------------------------------------------------------------------
if filenames == []: filenames = [None] if filenames == []: filenames = [None]
for name in filenames: for name in filenames:
try: try: table = damask.ASCIItable(name = name,
table = damask.ASCIItable(name = name, buffered = False,
buffered = False, labeled = False) labeled = False)
except: continue except: continue
damask.util.report(scriptName,name) damask.util.report(scriptName,name)
# --- interpret header ---------------------------------------------------------------------------- # --- interpret header ---------------------------------------------------------------------------
table.head_read() table.head_read()
info,extra_header = table.head_getGeom() info,extra_header = table.head_getGeom()
@ -73,9 +80,9 @@ for name in filenames:
table.close(dismiss = True) table.close(dismiss = True)
continue continue
# --- read data ------------------------------------------------------------------------------------ # --- read data ----------------------------------------------------------------------------------
microstructure = table.microstructure_read(info['grid']) # read microstructure microstructure = table.microstructure_read(info['grid'],datatype) # read microstructure
# --- do work ------------------------------------------------------------------------------------ # --- do work ------------------------------------------------------------------------------------
@ -90,9 +97,9 @@ for name in filenames:
substituted += options.microstructure # shift microstructure indices substituted += options.microstructure # shift microstructure indices
newInfo['origin'] = info['origin'] + options.origin newInfo['origin'] = info['origin'] + options.origin
newInfo['microstructures'] = substituted.max() newInfo['microstructures'] = len(np.unique(substituted))
# --- report --------------------------------------------------------------------------------------- # --- report -------------------------------------------------------------------------------------
remarks = [] remarks = []
if (any(newInfo['origin'] != info['origin'])): if (any(newInfo['origin'] != info['origin'])):
@ -101,7 +108,7 @@ for name in filenames:
remarks.append('--> microstructures: %i'%newInfo['microstructures']) remarks.append('--> microstructures: %i'%newInfo['microstructures'])
if remarks != []: damask.util.croak(remarks) if remarks != []: damask.util.croak(remarks)
# --- write header --------------------------------------------------------------------------------- # --- write header -------------------------------------------------------------------------------
table.labels_clear() table.labels_clear()
table.info_clear() table.info_clear()
@ -116,12 +123,12 @@ for name in filenames:
]) ])
table.head_write() table.head_write()
# --- write microstructure information ------------------------------------------------------------ # --- write microstructure information -----------------------------------------------------------
formatwidth = int(math.floor(math.log10(microstructure.max())+1)) format = '%g' if options.real else '%{}i'.format(int(math.floor(math.log10(microstructure.max())+1)))
table.data = substituted.reshape((info['grid'][0],info['grid'][1]*info['grid'][2]),order='F').transpose() table.data = substituted.reshape((info['grid'][0],info['grid'][1]*info['grid'][2]),order='F').transpose()
table.data_writeArray('%%%ii'%(formatwidth),delimiter = ' ') table.data_writeArray(format,delimiter = ' ')
# --- output finalization -------------------------------------------------------------------------- # --- output finalization ------------------------------------------------------------------------
table.close() # close ASCII table table.close() # close ASCII table