Merge branch 'more-tests' into 'development'
More tests See merge request damask/DAMASK!857
This commit is contained in:
Daniel Otto de Mentock
commit
f86d4be18a
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@ -88,7 +88,7 @@ done
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secondLevel "Details on $DEFAULT_PYTHON:"
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secondLevel "Details on $DEFAULT_PYTHON:"
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echo $(ls -la $(which $DEFAULT_PYTHON))
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echo $(ls -la $(which $DEFAULT_PYTHON))
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for MODULE in numpy scipy pandas matplotlib yaml h5py;do
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for MODULE in numpy scipy pandas matplotlib yaml h5py;do
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thirdLevel $module
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thirdLevel $MODULE
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$DEFAULT_PYTHON -c "import $MODULE; \
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$DEFAULT_PYTHON -c "import $MODULE; \
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print('Version: {}'.format($MODULE.__version__)); \
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print('Version: {}'.format($MODULE.__version__)); \
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print('Location: {}'.format($MODULE.__file__))"
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print('Location: {}'.format($MODULE.__file__))"
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@ -38,16 +38,12 @@ module HDF5_utilities
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module procedure HDF5_read_real3
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module procedure HDF5_read_real3
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module procedure HDF5_read_real4
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module procedure HDF5_read_real4
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module procedure HDF5_read_real5
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module procedure HDF5_read_real5
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module procedure HDF5_read_real6
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module procedure HDF5_read_real7
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module procedure HDF5_read_int1
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module procedure HDF5_read_int1
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module procedure HDF5_read_int2
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module procedure HDF5_read_int2
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module procedure HDF5_read_int3
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module procedure HDF5_read_int3
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module procedure HDF5_read_int4
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module procedure HDF5_read_int4
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module procedure HDF5_read_int5
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module procedure HDF5_read_int5
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module procedure HDF5_read_int6
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module procedure HDF5_read_int7
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end interface HDF5_read
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end interface HDF5_read
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!--------------------------------------------------------------------------------------------------
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!--------------------------------------------------------------------------------------------------
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@ -56,20 +52,19 @@ module HDF5_utilities
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!--------------------------------------------------------------------------------------------------
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!--------------------------------------------------------------------------------------------------
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interface HDF5_write
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interface HDF5_write
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#if defined(__GFORTRAN__)
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#if defined(__GFORTRAN__)
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! https://gcc.gnu.org/bugzilla/show_bug.cgi?id=105674
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! https://gcc.gnu.org/bugzilla/show_bug.cgi?id=105687
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module procedure HDF5_write_real1
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module procedure HDF5_write_real1
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module procedure HDF5_write_real2
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module procedure HDF5_write_real2
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module procedure HDF5_write_real3
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module procedure HDF5_write_real3
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module procedure HDF5_write_real4
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module procedure HDF5_write_real4
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module procedure HDF5_write_real5
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module procedure HDF5_write_real5
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module procedure HDF5_write_real6
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module procedure HDF5_write_real7
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module procedure HDF5_write_int1
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module procedure HDF5_write_int1
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module procedure HDF5_write_int2
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module procedure HDF5_write_int2
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module procedure HDF5_write_int3
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module procedure HDF5_write_int3
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module procedure HDF5_write_int4
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module procedure HDF5_write_int4
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module procedure HDF5_write_int5
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module procedure HDF5_write_int5
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module procedure HDF5_write_int6
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module procedure HDF5_write_int7
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#else
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#else
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module procedure HDF5_write_real
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module procedure HDF5_write_real
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module procedure HDF5_write_int
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module procedure HDF5_write_int
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@ -811,76 +806,6 @@ subroutine HDF5_read_real5(dataset,loc_id,datasetName,parallel)
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end subroutine HDF5_read_real5
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end subroutine HDF5_read_real5
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!--------------------------------------------------------------------------------------------------
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!> @brief read dataset of type real with 6 dimensions
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_read_real6(dataset,loc_id,datasetName,parallel)
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real(pREAL), intent(out), dimension(:,:,:,:,:,:) :: dataset !< data read from file
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integer(HID_T), intent(in) :: loc_id !< file or group handle
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character(len=*), intent(in) :: datasetName !< name of the dataset in the file
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logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
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integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
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integer(HSIZE_T), dimension(rank(dataset)) :: &
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myStart, &
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myShape, & !< shape of the dataset (this process)
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totalShape !< shape of the dataset (all processes)
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integer :: hdferr
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myShape = int(shape(dataset),HSIZE_T)
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if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
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call initialize_read(dset_id,filespace_id,memspace_id,plist_id,aplist_id, &
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myStart,totalShape,loc_id,myShape,datasetName, &
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misc_optional(parallel,parallel_default))
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if (any(totalShape == 0)) return
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call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
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file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
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call HDF5_chkerr(hdferr)
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call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
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end subroutine HDF5_read_real6
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!--------------------------------------------------------------------------------------------------
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!> @brief read dataset of type real with 7 dimensions
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_read_real7(dataset,loc_id,datasetName,parallel)
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real(pREAL), intent(out), dimension(:,:,:,:,:,:,:) :: dataset !< data read from file
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integer(HID_T), intent(in) :: loc_id !< file or group handle
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character(len=*), intent(in) :: datasetName !< name of the dataset in the file
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logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
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integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
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integer(HSIZE_T), dimension(rank(dataset)) :: &
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myStart, &
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myShape, & !< shape of the dataset (this process)
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totalShape !< shape of the dataset (all processes)
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integer :: hdferr
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myShape = int(shape(dataset),HSIZE_T)
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if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
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call initialize_read(dset_id,filespace_id,memspace_id,plist_id,aplist_id, &
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myStart,totalShape,loc_id,myShape,datasetName, &
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misc_optional(parallel,parallel_default))
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if (any(totalShape == 0)) return
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call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
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file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
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call HDF5_chkerr(hdferr)
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call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
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end subroutine HDF5_read_real7
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!--------------------------------------------------------------------------------------------------
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!--------------------------------------------------------------------------------------------------
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!> @brief read dataset of type integer with 1 dimension
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!> @brief read dataset of type integer with 1 dimension
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@ -1053,78 +978,8 @@ subroutine HDF5_read_int5(dataset,loc_id,datasetName,parallel)
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end subroutine HDF5_read_int5
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end subroutine HDF5_read_int5
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!--------------------------------------------------------------------------------------------------
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!> @brief read dataset of type integer with 6 dimensions
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_read_int6(dataset,loc_id,datasetName,parallel)
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integer, intent(out), dimension(:,:,:,:,:,:) :: dataset !< data read from file
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integer(HID_T), intent(in) :: loc_id !< file or group handle
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character(len=*), intent(in) :: datasetName !< name of the dataset in the file
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logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
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integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
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integer(HSIZE_T), dimension(rank(dataset)) :: &
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myStart, &
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myShape, & !< shape of the dataset (this process)
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totalShape !< shape of the dataset (all processes)
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integer :: hdferr
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myShape = int(shape(dataset),HSIZE_T)
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if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
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call initialize_read(dset_id,filespace_id,memspace_id,plist_id,aplist_id, &
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myStart,totalShape,loc_id,myShape,datasetName, &
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misc_optional(parallel,parallel_default))
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if (any(totalShape == 0)) return
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call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
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file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
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call HDF5_chkerr(hdferr)
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call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
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end subroutine HDF5_read_int6
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!--------------------------------------------------------------------------------------------------
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!> @brief read dataset of type integer with 7 dimensions
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_read_int7(dataset,loc_id,datasetName,parallel)
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integer, intent(out), dimension(:,:,:,:,:,:,:) :: dataset !< data read from file
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integer(HID_T), intent(in) :: loc_id !< file or group handle
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character(len=*), intent(in) :: datasetName !< name of the dataset in the file
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logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
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integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
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integer(HSIZE_T), dimension(rank(dataset)) :: &
|
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myStart, &
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myShape, & !< shape of the dataset (this process)
|
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totalShape !< shape of the dataset (all processes)
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integer :: hdferr
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|
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|
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myShape = int(shape(dataset),HSIZE_T)
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if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
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call initialize_read(dset_id,filespace_id,memspace_id,plist_id,aplist_id, &
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myStart,totalShape,loc_id,myShape,datasetName, &
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||||||
misc_optional(parallel,parallel_default))
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|
||||||
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|
||||||
if (any(totalShape == 0)) return
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|
||||||
|
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||||||
call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
||||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
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||||||
call HDF5_chkerr(hdferr)
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|
||||||
|
|
||||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
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|
||||||
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|
||||||
end subroutine HDF5_read_int7
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|
||||||
|
|
||||||
#if defined(__GFORTRAN__)
|
#if defined(__GFORTRAN__)
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief write dataset of type real with 1 dimension
|
!> @brief write dataset of type real with 1 dimension
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
|
@ -1311,84 +1166,10 @@ subroutine HDF5_write_real5(dataset,loc_id,datasetName,parallel)
|
||||||
|
|
||||||
end subroutine HDF5_write_real5
|
end subroutine HDF5_write_real5
|
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|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
!> @brief write dataset of type real with 6 dimensions
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
subroutine HDF5_write_real6(dataset,loc_id,datasetName,parallel)
|
|
||||||
|
|
||||||
real(pREAL), intent(in), dimension(:,:,:,:,:,:) :: dataset !< data written to file
|
|
||||||
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
||||||
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
||||||
logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
|
|
||||||
|
|
||||||
|
|
||||||
integer :: hdferr
|
|
||||||
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
||||||
integer(HSIZE_T), dimension(rank(dataset)) :: &
|
|
||||||
myStart, &
|
|
||||||
myShape, & !< shape of the dataset (this process)
|
|
||||||
totalShape !< shape of the dataset (all processes)
|
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------------------------
|
|
||||||
! determine shape of dataset
|
|
||||||
myShape = int(shape(dataset),HSIZE_T)
|
|
||||||
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
|
||||||
|
|
||||||
call initialize_write(dset_id,filespace_id,memspace_id,plist_id, &
|
|
||||||
myStart,totalShape,loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE, &
|
|
||||||
misc_optional(parallel,parallel_default))
|
|
||||||
|
|
||||||
if (product(totalShape) /= 0) then
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
call HDF5_chkerr(hdferr)
|
|
||||||
end if
|
|
||||||
|
|
||||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|
||||||
|
|
||||||
end subroutine HDF5_write_real6
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
!> @brief write dataset of type real with 7 dimensions
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
subroutine HDF5_write_real7(dataset,loc_id,datasetName,parallel)
|
|
||||||
|
|
||||||
real(pREAL), intent(in), dimension(:,:,:,:,:,:,:) :: dataset !< data written to file
|
|
||||||
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
||||||
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
||||||
logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
|
|
||||||
|
|
||||||
|
|
||||||
integer :: hdferr
|
|
||||||
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
||||||
integer(HSIZE_T), dimension(rank(dataset)) :: &
|
|
||||||
myStart, &
|
|
||||||
myShape, & !< shape of the dataset (this process)
|
|
||||||
totalShape !< shape of the dataset (all processes)
|
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------------------------
|
|
||||||
! determine shape of dataset
|
|
||||||
myShape = int(shape(dataset),HSIZE_T)
|
|
||||||
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
|
||||||
|
|
||||||
call initialize_write(dset_id,filespace_id,memspace_id,plist_id, &
|
|
||||||
myStart,totalShape,loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE, &
|
|
||||||
misc_optional(parallel,parallel_default))
|
|
||||||
|
|
||||||
if (product(totalShape) /= 0) then
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
call HDF5_chkerr(hdferr)
|
|
||||||
end if
|
|
||||||
|
|
||||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|
||||||
|
|
||||||
end subroutine HDF5_write_real7
|
|
||||||
|
|
||||||
#else
|
#else
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief write dataset of type real with 1-7 dimension
|
!> @brief write dataset of type real with 1-5 dimension
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine HDF5_write_real(dataset,loc_id,datasetName,parallel)
|
subroutine HDF5_write_real(dataset,loc_id,datasetName,parallel)
|
||||||
|
|
||||||
|
|
@ -1431,12 +1212,6 @@ subroutine HDF5_write_real(dataset,loc_id,datasetName,parallel)
|
||||||
rank (5)
|
rank (5)
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||||
rank (6)
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
rank (7)
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
end select
|
end select
|
||||||
call HDF5_chkerr(hdferr)
|
call HDF5_chkerr(hdferr)
|
||||||
end if
|
end if
|
||||||
|
|
@ -1508,8 +1283,8 @@ subroutine HDF5_write_str(dataset,loc_id,datasetName)
|
||||||
|
|
||||||
end subroutine HDF5_write_str
|
end subroutine HDF5_write_str
|
||||||
|
|
||||||
#if defined(__GFORTRAN__)
|
|
||||||
|
|
||||||
|
#if defined(__GFORTRAN__)
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Write dataset of type integer with 1 dimensions.
|
!> @brief Write dataset of type integer with 1 dimensions.
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
|
@ -1695,84 +1470,10 @@ subroutine HDF5_write_int5(dataset,loc_id,datasetName,parallel)
|
||||||
|
|
||||||
end subroutine HDF5_write_int5
|
end subroutine HDF5_write_int5
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
!> @brief Write dataset of type integer with 6 dimensions.
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
subroutine HDF5_write_int6(dataset,loc_id,datasetName,parallel)
|
|
||||||
|
|
||||||
integer, intent(in), dimension(:,:,:,:,:,:) :: dataset !< data written to file
|
|
||||||
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
||||||
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
||||||
logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
|
|
||||||
|
|
||||||
|
|
||||||
integer :: hdferr
|
|
||||||
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
||||||
integer(HSIZE_T), dimension(rank(dataset)) :: &
|
|
||||||
myStart, &
|
|
||||||
myShape, & !< shape of the dataset (this process)
|
|
||||||
totalShape !< shape of the dataset (all processes)
|
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------------------------
|
|
||||||
! determine shape of dataset
|
|
||||||
myShape = int(shape(dataset),HSIZE_T)
|
|
||||||
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
|
||||||
|
|
||||||
call initialize_write(dset_id,filespace_id,memspace_id,plist_id, &
|
|
||||||
myStart,totalShape,loc_id,myShape,datasetName,H5T_NATIVE_INTEGER, &
|
|
||||||
misc_optional(parallel,parallel_default))
|
|
||||||
|
|
||||||
if (product(totalShape) /= 0) then
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
call HDF5_chkerr(hdferr)
|
|
||||||
end if
|
|
||||||
|
|
||||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|
||||||
|
|
||||||
end subroutine HDF5_write_int6
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
!> @brief Write dataset of type integer with 7 dimensions.
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
|
||||||
subroutine HDF5_write_int7(dataset,loc_id,datasetName,parallel)
|
|
||||||
|
|
||||||
integer, intent(in), dimension(:,:,:,:,:,:,:) :: dataset !< data written to file
|
|
||||||
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
||||||
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
||||||
logical, intent(in), optional :: parallel !< dataset is distributed over multiple processes
|
|
||||||
|
|
||||||
|
|
||||||
integer :: hdferr
|
|
||||||
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
||||||
integer(HSIZE_T), dimension(rank(dataset)) :: &
|
|
||||||
myStart, &
|
|
||||||
myShape, & !< shape of the dataset (this process)
|
|
||||||
totalShape !< shape of the dataset (all processes)
|
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------------------------
|
|
||||||
! determine shape of dataset
|
|
||||||
myShape = int(shape(dataset),HSIZE_T)
|
|
||||||
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
|
||||||
|
|
||||||
call initialize_write(dset_id,filespace_id,memspace_id,plist_id, &
|
|
||||||
myStart,totalShape,loc_id,myShape,datasetName,H5T_NATIVE_INTEGER, &
|
|
||||||
misc_optional(parallel,parallel_default))
|
|
||||||
|
|
||||||
if (product(totalShape) /= 0) then
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
call HDF5_chkerr(hdferr)
|
|
||||||
end if
|
|
||||||
|
|
||||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|
||||||
|
|
||||||
end subroutine HDF5_write_int7
|
|
||||||
|
|
||||||
#else
|
#else
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Write dataset of type integer with 1-7 dimensions.
|
!> @brief Write dataset of type integer with 1-5 dimensions.
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine HDF5_write_int(dataset,loc_id,datasetName,parallel)
|
subroutine HDF5_write_int(dataset,loc_id,datasetName,parallel)
|
||||||
|
|
||||||
|
|
@ -1815,12 +1516,6 @@ subroutine HDF5_write_int(dataset,loc_id,datasetName,parallel)
|
||||||
rank(5)
|
rank(5)
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||||
rank(6)
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
rank(7)
|
|
||||||
call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
||||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
||||||
end select
|
end select
|
||||||
call HDF5_chkerr(hdferr)
|
call HDF5_chkerr(hdferr)
|
||||||
end if
|
end if
|
||||||
|
|
@ -1830,6 +1525,7 @@ subroutine HDF5_write_int(dataset,loc_id,datasetName,parallel)
|
||||||
end subroutine HDF5_write_int
|
end subroutine HDF5_write_int
|
||||||
#endif
|
#endif
|
||||||
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Initialize read handles and determine global shape in case of parallel IO.
|
!> @brief Initialize read handles and determine global shape in case of parallel IO.
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
|
|
||||||
|
|
@ -247,6 +247,7 @@ function IO_strValue(str,chunkPos,myChunk)
|
||||||
integer, intent(in) :: myChunk !< position number of desired chunk
|
integer, intent(in) :: myChunk !< position number of desired chunk
|
||||||
character(len=:), allocatable :: IO_strValue
|
character(len=:), allocatable :: IO_strValue
|
||||||
|
|
||||||
|
|
||||||
validChunk: if (myChunk > chunkPos(1) .or. myChunk < 1) then
|
validChunk: if (myChunk > chunkPos(1) .or. myChunk < 1) then
|
||||||
IO_strValue = ''
|
IO_strValue = ''
|
||||||
call IO_error(110,'IO_strValue: "'//trim(str)//'"',label1='chunk',ID1=myChunk)
|
call IO_error(110,'IO_strValue: "'//trim(str)//'"',label1='chunk',ID1=myChunk)
|
||||||
|
|
@ -266,6 +267,7 @@ integer function IO_intValue(str,chunkPos,myChunk)
|
||||||
integer, dimension(:), intent(in) :: chunkPos !< positions of start and end of each tag/chunk in given string
|
integer, dimension(:), intent(in) :: chunkPos !< positions of start and end of each tag/chunk in given string
|
||||||
integer, intent(in) :: myChunk !< position number of desired chunk
|
integer, intent(in) :: myChunk !< position number of desired chunk
|
||||||
|
|
||||||
|
|
||||||
IO_intValue = IO_strAsInt(IO_strValue(str,chunkPos,myChunk))
|
IO_intValue = IO_strAsInt(IO_strValue(str,chunkPos,myChunk))
|
||||||
|
|
||||||
end function IO_intValue
|
end function IO_intValue
|
||||||
|
|
@ -280,6 +282,7 @@ real(pREAL) function IO_realValue(str,chunkPos,myChunk)
|
||||||
integer, dimension(:), intent(in) :: chunkPos !< positions of start and end of each tag/chunk in given string
|
integer, dimension(:), intent(in) :: chunkPos !< positions of start and end of each tag/chunk in given string
|
||||||
integer, intent(in) :: myChunk !< position number of desired chunk
|
integer, intent(in) :: myChunk !< position number of desired chunk
|
||||||
|
|
||||||
|
|
||||||
IO_realValue = IO_strAsReal(IO_strValue(str,chunkPos,myChunk))
|
IO_realValue = IO_strAsReal(IO_strValue(str,chunkPos,myChunk))
|
||||||
|
|
||||||
end function IO_realValue
|
end function IO_realValue
|
||||||
|
|
@ -443,6 +446,7 @@ subroutine IO_error(error_ID,ext_msg,label1,ID1,label2,ID2)
|
||||||
external :: quit
|
external :: quit
|
||||||
character(len=:), allocatable :: msg
|
character(len=:), allocatable :: msg
|
||||||
|
|
||||||
|
|
||||||
select case (error_ID)
|
select case (error_ID)
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
|
|
||||||
|
|
@ -5,8 +5,9 @@
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
module materialpoint
|
module materialpoint
|
||||||
use parallelization
|
use parallelization
|
||||||
use signal
|
|
||||||
use CLI
|
use CLI
|
||||||
|
use system_routines
|
||||||
|
use signal
|
||||||
use prec
|
use prec
|
||||||
use misc
|
use misc
|
||||||
use IO
|
use IO
|
||||||
|
|
@ -46,6 +47,7 @@ subroutine materialpoint_initAll()
|
||||||
|
|
||||||
call parallelization_init()
|
call parallelization_init()
|
||||||
call CLI_init() ! grid and mesh commandline interface
|
call CLI_init() ! grid and mesh commandline interface
|
||||||
|
call system_routines_init()
|
||||||
call signal_init()
|
call signal_init()
|
||||||
call prec_init()
|
call prec_init()
|
||||||
call misc_init()
|
call misc_init()
|
||||||
|
|
|
||||||
|
|
@ -1380,6 +1380,12 @@ subroutine math_selfTest()
|
||||||
if (any(dNeq0(math_eye(3),math_inv33(math_I3)))) &
|
if (any(dNeq0(math_eye(3),math_inv33(math_I3)))) &
|
||||||
error stop 'math_inv33(math_I3)'
|
error stop 'math_inv33(math_I3)'
|
||||||
|
|
||||||
|
if (any(dNeq(t33,math_symmetric33(t33)+math_skew33(t33),1.0e-10_pReal))) &
|
||||||
|
error stop 'math_symmetric/skew'
|
||||||
|
|
||||||
|
if (any(dNeq(t33,math_spherical33(t33)+math_deviatoric33(t33),1.0e-10_pReal))) &
|
||||||
|
error stop 'math_spherical/deviatoric'
|
||||||
|
|
||||||
do while(abs(math_det33(t33))<1.0e-9_pREAL)
|
do while(abs(math_det33(t33))<1.0e-9_pREAL)
|
||||||
call random_number(t33)
|
call random_number(t33)
|
||||||
end do
|
end do
|
||||||
|
|
|
||||||
|
|
@ -6,11 +6,14 @@ module system_routines
|
||||||
use, intrinsic :: ISO_C_Binding
|
use, intrinsic :: ISO_C_Binding
|
||||||
|
|
||||||
use prec
|
use prec
|
||||||
|
use IO
|
||||||
|
|
||||||
implicit none(type,external)
|
implicit none(type,external)
|
||||||
private
|
private
|
||||||
|
|
||||||
public :: &
|
public :: &
|
||||||
|
system_routines_init, &
|
||||||
|
system_routines_selfTest, &
|
||||||
setCWD, &
|
setCWD, &
|
||||||
getCWD, &
|
getCWD, &
|
||||||
getHostName, &
|
getHostName, &
|
||||||
|
|
@ -93,6 +96,18 @@ module system_routines
|
||||||
contains
|
contains
|
||||||
|
|
||||||
|
|
||||||
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
!> @brief Do self test.
|
||||||
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
subroutine system_routines_init()
|
||||||
|
|
||||||
|
print'(/,1x,a)', '<<<+- system_routines init -+>>>'; flush(IO_STDOUT)
|
||||||
|
|
||||||
|
call system_routines_selfTest()
|
||||||
|
|
||||||
|
end subroutine system_routines_init
|
||||||
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Set the current working directory.
|
!> @brief Set the current working directory.
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
|
@ -103,6 +118,8 @@ logical function setCWD(path)
|
||||||
|
|
||||||
setCWD = setCWD_C(f_c_string(path)) /= 0_C_INT
|
setCWD = setCWD_C(f_c_string(path)) /= 0_C_INT
|
||||||
|
|
||||||
|
call system_routines_selfTest()
|
||||||
|
|
||||||
end function setCWD
|
end function setCWD
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -212,5 +229,30 @@ pure function f_c_string(f_string) result(c_string)
|
||||||
end function f_c_string
|
end function f_c_string
|
||||||
|
|
||||||
|
|
||||||
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
!> @brief Check correctness of some system_routine functions.
|
||||||
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
subroutine system_routines_selfTest()
|
||||||
|
|
||||||
|
real :: r
|
||||||
|
real, dimension(:), allocatable :: rnd_real
|
||||||
|
character(len=:), allocatable :: rnd_str
|
||||||
|
integer :: i
|
||||||
|
|
||||||
|
|
||||||
|
call random_number(r)
|
||||||
|
allocate(rnd_real(30+int(r*50.)))
|
||||||
|
call random_number(rnd_real)
|
||||||
|
allocate(character(size(rnd_real))::rnd_str)
|
||||||
|
|
||||||
|
do i = 1, size(rnd_real)
|
||||||
|
rnd_str(i:i) = char(32 + int(rnd_real(i)*(127.-32.)))
|
||||||
|
end do
|
||||||
|
|
||||||
|
if (c_f_string(f_c_string(rnd_str)) /= rnd_str) error stop 'c_f_string/f_c_string'
|
||||||
|
|
||||||
|
end subroutine system_routines_selfTest
|
||||||
|
|
||||||
|
|
||||||
end module system_routines
|
end module system_routines
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -5,6 +5,7 @@ program DAMASK_test
|
||||||
use IO
|
use IO
|
||||||
|
|
||||||
use test_prec
|
use test_prec
|
||||||
|
use test_system_routines
|
||||||
use test_misc
|
use test_misc
|
||||||
use test_math
|
use test_math
|
||||||
use test_polynomials
|
use test_polynomials
|
||||||
|
|
@ -19,7 +20,7 @@ program DAMASK_test
|
||||||
|
|
||||||
character(len=*), parameter :: &
|
character(len=*), parameter :: &
|
||||||
ok = achar(27)//'[32mok'//achar(27)//'[0m', &
|
ok = achar(27)//'[32mok'//achar(27)//'[0m', &
|
||||||
fmt = '(3x,a,T19,a,1x)'
|
fmt = '(3x,a,T20,a,1x)'
|
||||||
|
|
||||||
call parallelization_init()
|
call parallelization_init()
|
||||||
call HDF5_utilities_init()
|
call HDF5_utilities_init()
|
||||||
|
|
@ -34,6 +35,10 @@ program DAMASK_test
|
||||||
call test_misc_run()
|
call test_misc_run()
|
||||||
write(IO_STDOUT,fmt='(a)') ok
|
write(IO_STDOUT,fmt='(a)') ok
|
||||||
|
|
||||||
|
write(IO_STDOUT,fmt=fmt, advance='no') 'system_routines','...'
|
||||||
|
call test_system_routines_run()
|
||||||
|
write(IO_STDOUT,fmt='(a)') ok
|
||||||
|
|
||||||
write(IO_STDOUT,fmt=fmt, advance='no') 'math','...'
|
write(IO_STDOUT,fmt=fmt, advance='no') 'math','...'
|
||||||
call test_math_run()
|
call test_math_run()
|
||||||
write(IO_STDOUT,fmt='(a)') ok
|
write(IO_STDOUT,fmt='(a)') ok
|
||||||
|
|
|
||||||
|
|
@ -20,17 +20,108 @@ end subroutine test_HDF5_utilities_run
|
||||||
subroutine read_write()
|
subroutine read_write()
|
||||||
|
|
||||||
integer(HID_T) :: f
|
integer(HID_T) :: f
|
||||||
real(pREAL), dimension(3) :: d_in,d_out
|
|
||||||
|
real(pREAL), dimension(3) :: real_d1_in,real_d1_out
|
||||||
|
real(pREAL), dimension(3,3) :: real_d2_in,real_d2_out
|
||||||
|
real(pREAL), dimension(3,3,3) :: real_d3_in,real_d3_out
|
||||||
|
real(pREAL), dimension(3,3,3,3) :: real_d4_in,real_d4_out
|
||||||
|
real(pREAL), dimension(3,3,3,3,3) :: real_d5_in,real_d5_out
|
||||||
|
|
||||||
|
integer, dimension(3) :: int_d1_in,int_d1_out
|
||||||
|
integer, dimension(3,3) :: int_d2_in,int_d2_out
|
||||||
|
integer, dimension(3,3,3) :: int_d3_in,int_d3_out
|
||||||
|
integer, dimension(3,3,3,3) :: int_d4_in,int_d4_out
|
||||||
|
integer, dimension(3,3,3,3,3) :: int_d5_in,int_d5_out
|
||||||
|
|
||||||
|
|
||||||
call random_number(d_in)
|
call random_number(real_d1_in)
|
||||||
|
call random_number(real_d2_in)
|
||||||
|
call random_number(real_d3_in)
|
||||||
|
call random_number(real_d4_in)
|
||||||
|
call random_number(real_d5_in)
|
||||||
|
|
||||||
|
int_d1_in = int(real_d1_in*2048._pREAL)
|
||||||
|
int_d2_in = int(real_d2_in*2048._pREAL)
|
||||||
|
int_d3_in = int(real_d3_in*2048._pREAL)
|
||||||
|
int_d4_in = int(real_d4_in*2048._pREAL)
|
||||||
|
int_d5_in = int(real_d5_in*2048._pREAL)
|
||||||
|
|
||||||
|
|
||||||
f = HDF5_openFile('test.hdf5','w')
|
f = HDF5_openFile('test.hdf5','w')
|
||||||
|
|
||||||
call HDF5_write(d_in,f,'test')
|
|
||||||
call HDF5_read(d_out,f,'test')
|
|
||||||
|
|
||||||
if (any(d_in /= d_out)) error stop 'test_read_write'
|
call HDF5_write(real_d1_in,f,'real_d1')
|
||||||
|
call HDF5_write(real_d2_in,f,'real_d2')
|
||||||
|
call HDF5_write(real_d3_in,f,'real_d3')
|
||||||
|
call HDF5_write(real_d4_in,f,'real_d4')
|
||||||
|
call HDF5_write(real_d5_in,f,'real_d5')
|
||||||
|
|
||||||
|
call HDF5_write(int_d1_in,f,'int_d1')
|
||||||
|
call HDF5_write(int_d2_in,f,'int_d2')
|
||||||
|
call HDF5_write(int_d3_in,f,'int_d3')
|
||||||
|
call HDF5_write(int_d4_in,f,'int_d4')
|
||||||
|
call HDF5_write(int_d5_in,f,'int_d5')
|
||||||
|
|
||||||
|
|
||||||
|
call HDF5_read(real_d1_out,f,'real_d1')
|
||||||
|
call HDF5_read(real_d2_out,f,'real_d2')
|
||||||
|
call HDF5_read(real_d3_out,f,'real_d3')
|
||||||
|
call HDF5_read(real_d4_out,f,'real_d4')
|
||||||
|
call HDF5_read(real_d5_out,f,'real_d5')
|
||||||
|
|
||||||
|
call HDF5_read(int_d1_out,f,'int_d1')
|
||||||
|
call HDF5_read(int_d2_out,f,'int_d2')
|
||||||
|
call HDF5_read(int_d3_out,f,'int_d3')
|
||||||
|
call HDF5_read(int_d4_out,f,'int_d4')
|
||||||
|
call HDF5_read(int_d5_out,f,'int_d5')
|
||||||
|
|
||||||
|
|
||||||
|
if (any(real_d1_in /= real_d1_out)) error stop 'test_read_write(w)/real_d1'
|
||||||
|
if (any(real_d2_in /= real_d2_out)) error stop 'test_read_write(w)/real_d2'
|
||||||
|
if (any(real_d3_in /= real_d3_out)) error stop 'test_read_write(w)/real_d3'
|
||||||
|
if (any(real_d4_in /= real_d4_out)) error stop 'test_read_write(w)/real_d4'
|
||||||
|
if (any(real_d5_in /= real_d5_out)) error stop 'test_read_write(w)/real_d5'
|
||||||
|
|
||||||
|
if (any(int_d1_in /= int_d1_out)) error stop 'test_read_write(w)/int_d1'
|
||||||
|
if (any(int_d2_in /= int_d2_out)) error stop 'test_read_write(w)/int_d2'
|
||||||
|
if (any(int_d3_in /= int_d3_out)) error stop 'test_read_write(w)/int_d3'
|
||||||
|
if (any(int_d4_in /= int_d4_out)) error stop 'test_read_write(w)/int_d4'
|
||||||
|
if (any(int_d5_in /= int_d5_out)) error stop 'test_read_write(w)/int_d5'
|
||||||
|
|
||||||
|
|
||||||
|
call HDF5_closeFile(f)
|
||||||
|
|
||||||
|
f = HDF5_openFile('test.hdf5','r')
|
||||||
|
|
||||||
|
|
||||||
|
call HDF5_read(real_d1_out,f,'real_d1')
|
||||||
|
call HDF5_read(real_d2_out,f,'real_d2')
|
||||||
|
call HDF5_read(real_d3_out,f,'real_d3')
|
||||||
|
call HDF5_read(real_d4_out,f,'real_d4')
|
||||||
|
call HDF5_read(real_d5_out,f,'real_d5')
|
||||||
|
|
||||||
|
call HDF5_read(int_d1_out,f,'int_d1')
|
||||||
|
call HDF5_read(int_d2_out,f,'int_d2')
|
||||||
|
call HDF5_read(int_d3_out,f,'int_d3')
|
||||||
|
call HDF5_read(int_d4_out,f,'int_d4')
|
||||||
|
call HDF5_read(int_d5_out,f,'int_d5')
|
||||||
|
|
||||||
|
|
||||||
|
if (any(real_d1_in /= real_d1_out)) error stop 'test_read_write(r)/real_d1'
|
||||||
|
if (any(real_d2_in /= real_d2_out)) error stop 'test_read_write(r)/real_d2'
|
||||||
|
if (any(real_d3_in /= real_d3_out)) error stop 'test_read_write(r)/real_d3'
|
||||||
|
if (any(real_d4_in /= real_d4_out)) error stop 'test_read_write(r)/real_d4'
|
||||||
|
if (any(real_d5_in /= real_d5_out)) error stop 'test_read_write(r)/real_d5'
|
||||||
|
|
||||||
|
if (any(int_d1_in /= int_d1_out)) error stop 'test_read_write(r)/int_d1'
|
||||||
|
if (any(int_d2_in /= int_d2_out)) error stop 'test_read_write(r)/int_d2'
|
||||||
|
if (any(int_d3_in /= int_d3_out)) error stop 'test_read_write(r)/int_d3'
|
||||||
|
if (any(int_d4_in /= int_d4_out)) error stop 'test_read_write(r)/int_d4'
|
||||||
|
if (any(int_d5_in /= int_d5_out)) error stop 'test_read_write(r)/int_d5'
|
||||||
|
|
||||||
|
|
||||||
|
call HDF5_closeFile(f)
|
||||||
|
|
||||||
|
|
||||||
end subroutine read_write
|
end subroutine read_write
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -1,4 +1,6 @@
|
||||||
module test_IO
|
module test_IO
|
||||||
|
use prec
|
||||||
|
use parallelization
|
||||||
use IO
|
use IO
|
||||||
|
|
||||||
implicit none(type,external)
|
implicit none(type,external)
|
||||||
|
|
@ -10,8 +12,30 @@ module test_IO
|
||||||
|
|
||||||
subroutine test_IO_run()
|
subroutine test_IO_run()
|
||||||
|
|
||||||
|
real, dimension(30) :: rnd_real
|
||||||
|
character(len=size(rnd_real)) :: rnd_str
|
||||||
|
character(len=pSTRLEN), dimension(1) :: strarray_out
|
||||||
|
character(len=:), allocatable :: str_out, fname
|
||||||
|
integer :: u,i
|
||||||
|
|
||||||
|
|
||||||
call IO_selfTest()
|
call IO_selfTest()
|
||||||
|
|
||||||
|
call random_number(rnd_real)
|
||||||
|
fname = 'test'//IO_intAsStr(worldrank)//'.txt'
|
||||||
|
|
||||||
|
do i = 1, size(rnd_real)
|
||||||
|
rnd_str(i:i) = char(32 + int(rnd_real(i)*(127.-32.)))
|
||||||
|
end do
|
||||||
|
open(newunit=u,file=fname,status='replace',form='formatted')
|
||||||
|
write(u,'(a)') rnd_str
|
||||||
|
close(u)
|
||||||
|
|
||||||
|
str_out = IO_read(fname)
|
||||||
|
if (rnd_str//IO_EOL /= str_out) error stop 'IO_read'
|
||||||
|
strarray_out = IO_readlines(fname)
|
||||||
|
if (rnd_str /= strarray_out(1)) error stop 'IO_readlines'
|
||||||
|
|
||||||
end subroutine test_IO_run
|
end subroutine test_IO_run
|
||||||
|
|
||||||
end module test_IO
|
end module test_IO
|
||||||
|
|
|
||||||
|
|
@ -0,0 +1,17 @@
|
||||||
|
module test_system_routines
|
||||||
|
use system_routines
|
||||||
|
|
||||||
|
implicit none(type,external)
|
||||||
|
|
||||||
|
private
|
||||||
|
public :: test_system_routines_run
|
||||||
|
|
||||||
|
contains
|
||||||
|
|
||||||
|
subroutine test_system_routines_run()
|
||||||
|
|
||||||
|
call system_routines_selfTest()
|
||||||
|
|
||||||
|
end subroutine test_system_routines_run
|
||||||
|
|
||||||
|
end module test_system_routines
|
||||||
Loading…
Reference in New Issue