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[skip ci] added option for non-periodic geometries

This commit is contained in:
Philip Eisenlohr 2018-02-20 10:20:35 -05:00
parent 328c35a099
commit f5177b6d2d
1 changed files with 7 additions and 2 deletions
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9
processing/pre/geom_vicinityOffset.py
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@ -29,9 +29,14 @@ parser.add_option('-m', '--microstructureoffset',
type = 'int', metavar = 'int', type = 'int', metavar = 'int',
help = 'offset (positive or negative) for tagged microstructure indices. '+ help = 'offset (positive or negative) for tagged microstructure indices. '+
'"0" selects maximum microstructure index [%default]') '"0" selects maximum microstructure index [%default]')
parser.add_option('-n', '--nonperiodic',
dest = 'mode',
action = 'store_const', const = 'nearest',
help = 'assume geometry to be non-periodic')
parser.set_defaults(vicinity = 1, parser.set_defaults(vicinity = 1,
offset = 0, offset = 0,
mode = 'wrap',
) )
(options, filenames) = parser.parse_args() (options, filenames) = parser.parse_args()
@ -79,8 +84,8 @@ for name in filenames:
if options.offset == 0: options.offset = microstructure.max() if options.offset == 0: options.offset = microstructure.max()
microstructure = np.where(ndimage.filters.maximum_filter(microstructure,size=1+2*options.vicinity,mode='wrap') == microstructure = np.where(ndimage.filters.maximum_filter(microstructure,size=1+2*options.vicinity,mode=options.mode) ==
ndimage.filters.minimum_filter(microstructure,size=1+2*options.vicinity,mode='wrap'), ndimage.filters.minimum_filter(microstructure,size=1+2*options.vicinity,mode=options.mode),
microstructure, microstructure + options.offset) microstructure, microstructure + options.offset)
newInfo['microstructures'] = microstructure.max() newInfo['microstructures'] = microstructure.max()