From e851c934eeda6f8868a729e6f3d1adc96f7471c5 Mon Sep 17 00:00:00 2001
From: Philip	Eisenlohr <eisenlohr@egr.msu.edu>
Date: Sun, 14 Aug 2011 10:44:15 +0000
Subject: [PATCH] interrogate output from DAMASK_spectral for "error
 divergence:" evolution. results in an ASCII datafile containing the increment
 counter with corresponding divergence value. the evolution within an
 increment i is stretched between i and i+1 (and likely jumps then for the
 next increment i+1 at the value i+1)

---
 processing/post/spectral_convergence | 111 +++++++++++++++++++++++++++
 processing/setup/setup_processing.py |   1 +
 2 files changed, 112 insertions(+)
 create mode 100755 processing/post/spectral_convergence

diff --git a/processing/post/spectral_convergence b/processing/post/spectral_convergence
new file mode 100755
index 000000000..8d3c128e3
--- /dev/null
+++ b/processing/post/spectral_convergence
@@ -0,0 +1,111 @@
+#!/usr/bin/env python
+# -*- coding: UTF-8 no BOM -*-
+
+import os,sys,string
+from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP
+
+# -----------------------------
+class extendedOption(Option):
+# -----------------------------
+# used for definition of new option parser action 'extend', which enables to take multiple option arguments
+# taken from online tutorial http://docs.python.org/library/optparse.html
+    
+    ACTIONS = Option.ACTIONS + ("extend",)
+    STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
+    TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
+    ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
+
+    def take_action(self, action, dest, opt, value, values, parser):
+        if action == "extend":
+            lvalue = value.split(",")
+            values.ensure_value(dest, []).extend(lvalue)
+        else:
+            Option.take_action(self, action, dest, opt, value, values, parser)
+
+
+
+# ----------------------- MAIN -------------------------------
+
+parser = OptionParser(option_class=extendedOption, usage='%prog [options] spectralOut[s]', description = """
+Generate datafile of converged iteration per increment.
+
+""" + string.replace('$Id: spectral_iterationCount 919 2011-06-15 18:14:05Z MPIE\p.eisenlohr $','\n','\\n')
+)
+
+parser.add_option('-m','--memory',      dest='memory', action='store_true', \
+                                        help='load complete file into memory [%default]')
+parser.add_option('-g','--gap',         dest='gap', type='float', \
+                                        help='value to indicate gap between increments [%default]')
+
+parser.set_defaults(memory = False)
+parser.set_defaults(gap = -1)
+
+(options, filenames) = parser.parse_args()
+
+# ------------------------------------------ setup file handles ---------------------------------------  
+
+files = []
+if filenames == []:
+  files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout})
+else:
+  for name in filenames:
+    if os.path.exists(name):
+      (head,tail) = os.path.split(name)
+      files.append({'name':name, 'input':open(name), 
+                                'output':open(os.path.join(head,'convergence_'+os.path.splitext(tail)[0]+'.txt'), 'w')})
+
+
+# ------------------------------------------ loop over input files ---------------------------------------  
+
+for file in files:
+  print file['name']
+  inc  = 1
+  step = 1
+
+# ------------------------------------------ assemble header ---------------------------------------  
+
+  output = '1\theader\n' + \
+           '\t'.join(['inc','err_div']) + '\n'
+
+  if options.memory:
+    data = file['input'].readlines()
+  else:
+    data = []
+    file['output'].write(output)
+    output = ''
+  
+# ------------------------------------------ read file ---------------------------------------  
+
+  divergences = []
+  
+  for line in {True  : data,
+               False : file['input']}[options.memory]:
+
+    items = line.split()
+    if len(items) > 7 and items[0] == 'Loadcase':  # 'magic' line?
+      if int(items[5]) != step:
+        divergences.append(options.gap)
+        for i,div in enumerate(divergences):
+          output += '\t'.join(map(str,[inc+float(i)/(len(divergences)-1),div])) + '\n'
+        step = int(items[5])                                       # store current step count
+        inc += 1                                                   # is next inc
+        divergences = []                                           # reset divergences list
+
+        if not options.memory:
+          file['output'].write(output)
+          output = ''
+
+    if len(items) > 2 and items[0] == 'error' and items[1] == 'divergence:':  # 'magic' line?
+      divergences.append(float(items[2]))
+
+  for i,div in enumerate(divergences):                             # process last step (for which, of course, no further step can be found)
+    output += '\t'.join(map(str,[inc+float(i)/len(divergences),div])) + '\n'
+
+  file['input'].close()
+
+# ------------------------------------------ output result ---------------------------------------  
+
+  file['output'].write(output)
+
+  if file['name'] != 'STDIN':
+    file['output'].close
diff --git a/processing/setup/setup_processing.py b/processing/setup/setup_processing.py
index 6647470e2..64511e01a 100755
--- a/processing/setup/setup_processing.py
+++ b/processing/setup/setup_processing.py
@@ -30,6 +30,7 @@ bin_link = { \
 							'mentat_colorMap',
 							'postResults',
 							'spectral_iterationCount',
+							'spectral_convergence',
 							],
 						}