test is broken, consider the script to be broken.

just keep the executable until the next cleanup in PRIVATE is done
This commit is contained in:
Martin Diehl 2020-08-08 18:19:48 +02:00
parent 0878302961
commit e4ad2ab82e
1 changed files with 1 additions and 61 deletions

View File

@ -1,12 +1,8 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
import os import os
import sys
from io import StringIO
from optparse import OptionParser from optparse import OptionParser
import numpy as np
import damask import damask
@ -76,60 +72,4 @@ parser.set_defaults(center = (.0,.0,.0),
inside = True, inside = True,
) )
(options, filenames) = parser.parse_args() print('This script is broken and does nothing')
if options.dimension is None:
parser.error('no dimension specified.')
if [options.angleaxis,options.quaternion].count(None) == 0:
parser.error('more than one rotation specified.')
if options.angleaxis is not None:
rotation = damask.Rotation.from_axis_angle(np.array(options.angleaxis),options.degrees,normalise=True)
elif options.quaternion is not None:
rotation = damask.Rotation.from_quaternion(options.quaternion)
else:
rotation = damask.Rotation()
if filenames == []: filenames = [None]
for name in filenames:
damask.util.report(scriptName,name)
geom = damask.Geom.from_file(StringIO(''.join(sys.stdin.read())) if name is None else name)
grid = geom.get_grid()
size = geom.get_size()
# scale to box of size [1.0,1.0,1.0]
if options.realspace:
center = (np.array(options.center) - geom.get_origin())/size
r = np.array(options.dimension)/size/2.0
else:
center = (np.array(options.center) + 0.5)/grid
r = np.array(options.dimension)/grid/2.0
if np.any(center<0.0) or np.any(center>=1.0): print('error')
offset = np.ones(3)*0.5 if options.periodic else center
mask = np.full(grid,False)
# High exponents can cause underflow & overflow - okay here, just compare to 1, so +infinity and 0 are fine
np.seterr(over='ignore', under='ignore')
e = 2.0**np.array(options.exponent)
for x in range(grid[0]):
for y in range(grid[1]):
for z in range(grid[2]):
coords = np.array([x+0.5,y+0.5,z+0.5])/grid
mask[x,y,z] = np.sum(np.abs((rotation*(coords-offset))/r)**e) < 1
if options.periodic:
shift = ((offset-center)*grid).astype(int)
mask = np.roll(mask,shift,(0,1,2))
if options.inside: mask = np.logical_not(mask)
fill = np.nanmax(geom.microstructure)+1 if options.fill is None else options.fill
damask.util.croak(geom.update(np.where(mask,geom.microstructure,fill)))
geom.add_comments(scriptID + ' ' + ' '.join(sys.argv[1:]))
geom.to_file(sys.stdout if name is None else name,pack=False)