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DAMASK_EICMD
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Table replaces ASCIItable

This commit is contained in:
Martin Diehl 2020-01-15 06:37:53 +01:00
parent 31788301e9
commit e2802ca640
1 changed files with 10 additions and 59 deletions
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65
processing/post/addIndexed.py
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@ -2,6 +2,7 @@
import os
import sys
from io import StringIO
from optparse import OptionParser
import numpy as np
@ -43,71 +44,21 @@ parser.set_defaults(offset = 0,
)
(options,filenames) = parser.parse_args()
if filenames == []: filenames = [None]
if options.label is None:
parser.error('no data columns specified.')
if options.index is None:
parser.error('no index column given.')
# ------------------------------------------ process indexed ASCIItable ---------------------------
if options.asciitable is not None and os.path.isfile(options.asciitable):
indexedTable = damask.ASCIItable(name = options.asciitable,
buffered = False,
readonly = True)
indexedTable.head_read() # read ASCII header info of indexed table
missing_labels = indexedTable.data_readArray(options.label)
indexedTable.close() # close input ASCII table
if len(missing_labels) > 0:
damask.util.croak('column{} {} not found...'.format('s' if len(missing_labels) > 1 else '',', '.join(missing_labels)))
else:
parser.error('no indexed ASCIItable given.')
# --- loop over input files -------------------------------------------------------------------------
if filenames == []: filenames = [None]
for name in filenames:
try: table = damask.ASCIItable(name = name,
buffered = False)
except: continue
damask.util.report(scriptName,name)
# ------------------------------------------ read header ------------------------------------------
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
indexedTable = damask.Table.from_ASCII(options.asciitable)
idx = np.reshape(table.get(options.index).astype(int) + options.offset,(-1))-1
table.head_read()
for data in options.label:
table.add(data+'addIndexed',indexedTable.get(data)[idx],scriptID+' '+' '.join(sys.argv[1:]))
# ------------------------------------------ sanity checks ----------------------------------------
errors = []
indexColumn = table.label_index(options.index)
if indexColumn < 0: errors.append('index column {} not found.'.format(options.index))
if errors != []:
damask.util.croak(errors)
table.close(dismiss = True)
continue
# ------------------------------------------ assemble header --------------------------------------
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
table.labels_append(indexedTable.labels(raw = True)) # extend ASCII header with new labels
table.head_write()
# ------------------------------------------ process data ------------------------------------------
outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
try:
table.data_append(indexedTable.data[int(round(float(table.data[indexColumn])))+options.offset-1]) # add all mapped data types
except IndexError:
table.data_append(np.nan*np.ones_like(indexedTable.data[0]))
outputAlive = table.data_write() # output processed line
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables
table.to_ASCII(sys.stdout if name is None else name)