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DAMASK_EICMD
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create results file

This commit is contained in:
Martin Diehl 2018-11-18 11:58:49 +01:00
parent fb5b1bfd8e
commit dfd624e520
2 changed files with 29 additions and 183 deletions
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3
src/CPFEM2.f90
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@ -39,6 +39,8 @@ subroutine CPFEM_initAll()
material_init material_init
use HDF5_utilities, only: & use HDF5_utilities, only: &
HDF5_utilities_init HDF5_utilities_init
use results, only: &
results_init
use lattice, only: & use lattice, only: &
lattice_init lattice_init
use constitutive, only: & use constitutive, only: &
@ -73,6 +75,7 @@ subroutine CPFEM_initAll()
call lattice_init call lattice_init
call material_init call material_init
call HDF5_utilities_init call HDF5_utilities_init
call results_init
call constitutive_init call constitutive_init
call crystallite_init call crystallite_init
call homogenization_init call homogenization_init

209
src/results.f90
View File

@ -8,6 +8,7 @@ module results
use prec use prec
use IO use IO
use HDF5 use HDF5
use HDF5_utilities
#ifdef PETSc #ifdef PETSc
use PETSC use PETSC
#endif #endif
@ -31,187 +32,29 @@ module results
HDF5_addGroup ,& HDF5_addGroup ,&
HDF5_closeGroup ,& HDF5_closeGroup ,&
HDF5_openGroup, & HDF5_openGroup, &
HDF5_openGroup2, &
HDF5_forwardResults, & HDF5_forwardResults, &
HDF5_writeVectorDataset, & HDF5_writeVectorDataset, &
HDF5_writeScalarDataset, & HDF5_writeScalarDataset, &
HDF5_writeTensorDataset, & HDF5_writeTensorDataset, &
HDF5_closeJobFile, & HDF5_closeJobFile, &
HDF5_removeLink, & HDF5_removeLink
HDF5_createFile, &
HDF5_closeFile, &
HDF5_addGroup2
contains contains
subroutine results_init subroutine results_init
use, intrinsic :: & use, intrinsic :: &
iso_fortran_env ! to get compiler_version and compiler_options (at least for gfortran 4.6 at the moment) iso_fortran_env ! to get compiler_version and compiler_options (at least for gfortran 4.6 at the moment)
use DAMASK_interface, only: &
getSolverJobName
implicit none implicit none
write(6,'(/,a)') ' <<<+- HDF5_Utilities init -+>>>' write(6,'(/,a)') ' <<<+- results init -+>>>'
#include "compilation_info.f90" #include "compilation_info.f90"
currentInc = -1_pInt currentInc = -1_pInt
call HDF5_closeFile(HDF5_openFile(trim(getSolverJobName())//'.hdf5','w',.true.))
end subroutine results_init end subroutine results_init
!--------------------------------------------------------------------------------------------------
!> @brief creates and initializes HDF5 output files
!--------------------------------------------------------------------------------------------------
subroutine HDF5_createJobFile
use hdf5
use DAMASK_interface, only: &
getSolverJobName
implicit none
integer :: hdferr
character(len=1024) :: path
#ifdef PETSc
#include <petsc/finclude/petscsys.h>
call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5pcreate_f')
call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5pset_fapl_mpio_f')
#endif
!--------------------------------------------------------------------------------------------------
! open file
path = trim(getSolverJobName())//'.'//'hdf5'
!call h5fcreate_f(path,H5F_ACC_TRUNC_F,resultsFile,hdferr)
call h5fcreate_f(path,H5F_ACC_TRUNC_F,resultsFile,hdferr,access_prp = plist_id)
if (hdferr < 0) call IO_error(100_pInt,ext_msg=path)
call HDF5_addStringAttribute(resultsFile,'createdBy',DAMASKVERSION)
call h5pclose_f(plist_id, hdferr) !neu
end subroutine HDF5_createJobFile
!--------------------------------------------------------------------------------------------------
!> @brief creates and initializes HDF5 output files
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_createFile(path)
use hdf5
use DAMASK_interface, only: &
getSolverJobName
implicit none
integer :: hdferr
integer(SIZE_T) :: typeSize
character(len=*), intent(in) :: path
#ifdef PETSc
#include <petsc/finclude/petscsys.h>
#endif
call h5open_f(hdferr) !############################################################ DANGEROUS
#ifdef PETSc
call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5pcreate_f')
call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5pset_fapl_mpio_f')
#endif
!--------------------------------------------------------------------------------------------------
! create a file
!call h5fcreate_f(path,H5F_ACC_TRUNC_F,resultsFile,hdferr)
call h5fcreate_f(path,H5F_ACC_TRUNC_F,HDF5_createFile,hdferr,access_prp = plist_id)
if (hdferr < 0) call IO_error(100_pInt,ext_msg=path)
!call HDF5_addStringAttribute(HDF5_createFile,'createdBy',DAMASKVERSION)
call h5pclose_f(plist_id, hdferr) !neu
end function HDF5_createFile
!--------------------------------------------------------------------------------------------------
!> @brief close the opened HDF5 output file
!--------------------------------------------------------------------------------------------------
subroutine HDF5_closeJobFile()
use hdf5
implicit none
integer :: hdferr
call HDF5_removeLink('current')
call h5fclose_f(resultsFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeJobFile: h5fclose_f',el=hdferr)
! call h5close_f(hdferr)
end subroutine HDF5_closeJobFile
!--------------------------------------------------------------------------------------------------
!> @brief open and initializes HDF5 output file
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_openFile(fileName,mode)
implicit none
character(len=*), intent(in) :: fileName
character, intent(in), optional :: mode
character :: m
integer :: hdferr
if (present(mode)) then
m = mode
else
m = 'r'
endif
if (m == 'w') then
call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fcreate_f',el=hdferr)
elseif(m == 'a') then
call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (a)',el=hdferr)
elseif(m == 'r') then
call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (r)',el=hdferr)
else
call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f unknown access mode',el=hdferr)
endif
end function HDF5_openFile
!--------------------------------------------------------------------------------------------------
!> @brief close the opened HDF5 output file
!--------------------------------------------------------------------------------------------------
subroutine HDF5_closeFile(fileHandle)
implicit none
integer :: hdferr
integer(HID_T), intent(in) :: fileHandle
call h5fclose_f(fileHandle,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeFile: h5fclose_f',el=hdferr)
end subroutine HDF5_closeFile
!--------------------------------------------------------------------------------------------------
!> @brief adds a new group to the results file
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_addGroup(groupName)
use hdf5
implicit none
character(len=*), intent(in) :: groupName
integer :: hdferr
call h5gcreate_f(resultsFile, trim(groupName), HDF5_addGroup, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(groupName)//')')
end function HDF5_addGroup
!--------------------------------------------------------------------------------------------------
!> @brief adds a new group to the fileHandle (additional to addGroup2)
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_addGroup2(fileHandle,groupName)
use hdf5
implicit none
character(len=*), intent(in) :: groupName
integer(HID_T), intent(in) :: fileHandle
integer :: hdferr
call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup2, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup2: h5gcreate_f ('//trim(groupName)//')')
end function HDF5_addGroup2
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
!> @brief open a group from the results file !> @brief open a group from the results file
@ -229,20 +72,34 @@ integer(HID_T) function HDF5_openGroup(groupName)
end function HDF5_openGroup end function HDF5_openGroup
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
!> @brief open an existing group of a file !> @brief close the opened HDF5 output file
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_openGroup2(FileReadID,groupName) subroutine HDF5_closeJobFile()
use hdf5
implicit none
integer :: hdferr
call HDF5_removeLink('current')
call h5fclose_f(resultsFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeJobFile: h5fclose_f',el=hdferr)
! call h5close_f(hdferr)
end subroutine HDF5_closeJobFile
!--------------------------------------------------------------------------------------------------
!> @brief adds a new group to the results file
!--------------------------------------------------------------------------------------------------
integer(HID_T) function HDF5_addGroup(groupName)
use hdf5 use hdf5
implicit none implicit none
character(len=*), intent(in) :: groupName character(len=*), intent(in) :: groupName
integer :: hdferr integer :: hdferr
integer(HID_T), intent(in) :: FileReadID
call h5gopen_f(FileReadID, trim(groupName), HDF5_openGroup2, hdferr) call h5gcreate_f(resultsFile, trim(groupName), HDF5_addGroup, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup2: h5gopen_f ('//trim(groupName)//')') if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(groupName)//')')
end function HDF5_openGroup2 end function HDF5_addGroup
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
!> @brief set link to object in results file !> @brief set link to object in results file
@ -281,20 +138,6 @@ subroutine HDF5_removeLink(link)
end subroutine HDF5_removeLink end subroutine HDF5_removeLink
!--------------------------------------------------------------------------------------------------
!> @brief close a group
!--------------------------------------------------------------------------------------------------
subroutine HDF5_closeGroup(ID)
use hdf5
implicit none
integer(HID_T), intent(in) :: ID
integer :: hdferr
call h5gclose_f(ID, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(ID,pInt))
end subroutine HDF5_closeGroup
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
!> @brief adds a StringAttribute to the results file !> @brief adds a StringAttribute to the results file