Merge branch 'polishing' into 'development'

Polishing

See merge request damask/DAMASK!401

.gitlab-ci.yml

@@ -87,7 +87,6 @@ checkout:
     - git checkout $CI_COMMIT_SHA
     - git submodule update --init
     - source env/DAMASK.sh
-    - ./installation/symlink_Processing.py
   except:
     - master
     - release

PRIVATE

@@ -1 +1 @@
-Subproject commit 6363147d0a8bb45e681c5dc39041828a6b34664e
+Subproject commit 023f86ff9e603dcc8c7adc16545783653083ea83

examples/Marc/material.yaml

@@ -16,8 +16,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         xi_0_sl: [31e6]

examples/config/Phase_Dislotwin_TWIP-Steel-FeMnC.yaml

@@ -19,7 +19,7 @@ TWIP_Steel_FeMnC:
       D_0: 4.0e-5                  # Vacancy diffusion prefactor  / m^2/s
       D_a: 1.0                     # minimum dipole distance / b
       Q_cl: 4.5e-19                # Activation energy for climb / J
-      h_sl_sl: [0.122, 0.122, 0.625, 0.07, 0.137, 0.137, 0.122]  # Interaction coefficients (Kubin et al. 2008)
+      h_sl-sl: [0.122, 0.122, 0.625, 0.07, 0.137, 0.137, 0.122]  # Interaction coefficients (Kubin et al. 2008)
 # shear band parameters
       xi_sb: 180.0e6
       Q_sb: 3.7e-19
@@ -35,7 +35,7 @@ TWIP_Steel_FeMnC:
       V_cs:  1.67e-29              # cross slip volume / m^3
       p_tw: [10.0]                 # r-exponent in twin formation probability
       i_tw: 1.0                    # Adj. parameter controlling twin mean free path
-      h_sl_tw: [0.0, 1.0, 1.0]     # dislocation-twin interaction coefficients
+      h_sl-tw: [0.0, 1.0, 1.0]     # dislocation-twin interaction coefficients
-      h_tw_tw: [0.0, 1.0]          # twin-twin interaction coefficients
+      h_tw-tw: [0.0, 1.0]          # twin-twin interaction coefficients
       Gamma_sf_0K: -0.0396         # stacking fault energy / J/m^2 at zero K; TWIP steel: -0.0526; Cu: -0.0396
       dGamma_sf_dT: 0.0002         # temperature dependence / J/(m^2 K) of stacking fault energy

examples/config/Phase_Dislotwin_Tungsten.yaml

@@ -18,4 +18,4 @@ Tungsten:
       D_0: 4.0e-5            # Vacancy diffusion prefactor / m^2/s
       D_a: 1.0               # minimum dipole distance / b
       Q_cl: 4.5e-19          # Activation energy for climb / J
-      h_sl_sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4]
+      h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4]

examples/config/Phase_Phenopowerlaw_Aluminum.yaml

@@ -7,8 +7,8 @@ Aluminum:
       N_sl: [12]
       a_sl: 2.25
       dot_gamma_0_sl: 0.001
-      h_0_sl_sl: 75e6
+      h_0_sl-sl: 75e6
-      h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+      h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
       n_sl: 20
       output: [xi_sl, gamma_sl]
       type: phenopowerlaw

examples/config/Phase_Phenopowerlaw_BCC-Ferrite.yaml

@@ -9,8 +9,8 @@ Ferrite:
       N_sl: [12, 12]
       a_sl: 2.0
       dot_gamma_0_sl: 0.001
-      h_0_sl_sl: 1000.0e6
+      h_0_sl-sl: 1000.0e6
-      h_sl_sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4]
+      h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4]
       n_sl: 20
       type: phenopowerlaw
       xi_0_sl: [95.e6, 96.e6]

examples/config/Phase_Phenopowerlaw_BCC-Martensite.yaml

@@ -9,8 +9,8 @@ Martensite:
       N_sl: [12, 12]
       a_sl: 2.0
       dot_gamma_0_sl: 0.001
-      h_0_sl_sl: 563.0e9
+      h_0_sl-sl: 563.0e9
-      h_sl_sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4]
+      h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4]
       n_sl: 20
       type: phenopowerlaw
       xi_0_sl: [405.8e6, 456.7e6]

examples/config/Phase_Phenopowerlaw_Magnesium.yaml

@@ -8,13 +8,13 @@ Magnesium:
     plastic:
       N_sl: [3, 3, 0, 6, 0, 6]
       N_tw: [6, 0, 0, 6]
-      h_0_tw_tw: 50.0e6
+      h_0_tw-tw: 50.0e6
-      h_0_sl_sl: 500.0e6
+      h_0_sl-sl: 500.0e6
-      h_0_tw_sl: 150.0e6
+      h_0_tw-sl: 150.0e6
-      h_sl_sl: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
+      h_sl-sl: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
-      h_tw_tw: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
+      h_tw-tw: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
-      h_sl_tw: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
+      h_sl-tw: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
-      h_tw_sl: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
+      h_tw-sl: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
       output: [xi_sl, xi_tw]
       type: phenopowerlaw
       xi_0_sl: [10.0e6, 55.0e6, 0, 60.0e6, 0.0, 60.0e6]
@@ -25,4 +25,4 @@ Magnesium:
       dot_gamma_0_tw: 0.001
       n_sl: 20
       n_tw: 20
-      f_sat_sl_tw: 10.0
+      f_sat_sl-tw: 10.0

examples/config/Phase_Phenopowerlaw_cpTi.yaml

@@ -11,8 +11,8 @@ cpTi:
       N_sl: [3, 3, 0, 6, 12]
       a_sl: 2.0
       dot_gamma_0_sl: 0.001
-      h_0_sl_sl: 200e6
+      h_0_sl-sl: 200e6
-      h_sl_sl: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
+      h_sl-sl: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
       n_sl: 20
       output: [gamma_sl]
       type: phenopowerlaw

examples/config/phase/mechanical/plastic/dislotwin_IF-steel.yaml

@@ -18,7 +18,7 @@ q_sl: [1.55, 1.55]
 i_sl: [23.3, 23.3]
 D_a: 7.4 # C_anni
 B: [0.001, 0.001]
-h_sl_sl: [0.1, 0.72, 0.1, 0.053, 0.053, 0.073, 0.137, 0.72, 0.72, 0.053, 0.053, 0.053, 0.053, 0.073, 0.073, 0.073, 0.073, 0.073, 0.073, 0.137, 0.073, 0.073, 0.137, 0.073]
+h_sl-sl: [0.1, 0.72, 0.1, 0.053, 0.053, 0.073, 0.137, 0.72, 0.72, 0.053, 0.053, 0.053, 0.053, 0.073, 0.073, 0.073, 0.073, 0.073, 0.073, 0.137, 0.073, 0.073, 0.137, 0.073]
 D_0: 4.000E-05
 Q_cl: 5.400E-19 # no recovery!
 D: 40e-6 # estimated

examples/config/phase/mechanical/plastic/phenopowerlaw_Au.yaml

@@ -10,8 +10,8 @@ output: [xi_sl, gamma_sl]
 N_sl: [12]
 n_sl: 83.3
 dot_gamma_0_sl: 0.001
-h_0_sl_sl: 75.0e6
+h_0_sl-sl: 75.0e6
-h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
 a_sl: 1.0
 xi_0_sl: [26.25e6]
 xi_inf_sl: [53.0e6]

examples/grid/material.yaml

@@ -16,8 +16,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         xi_0_sl: [31e6]

examples/mesh/material.yaml

@@ -15,8 +15,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         xi_0_sl: [31e6]

installation/symlink_Processing.py

@@ -1,28 +0,0 @@
-#!/usr/bin/env python3
-
-# Makes postprocessing routines accessible from everywhere.
-import sys
-from pathlib import Path
-import os
-
-bin_dir = Path(os.environ['DAMASK_ROOT'])/'bin'
-
-if not bin_dir.exists():
-    bin_dir.mkdir()
-
-
-sys.stdout.write('\nsymbolic linking...\n')
-for sub_dir in ['pre','post']:
-    the_dir = Path(os.environ['DAMASK_ROOT'])/'processing'/sub_dir
-
-    for the_file in the_dir.glob('*.py'):
-        src = the_dir/the_file
-        dst = bin_dir/Path(the_file.with_suffix('').name)
-        if dst.is_file(): dst.unlink() # dst.unlink(True) for Python >3.8
-        dst.symlink_to(src)
-
-
-sys.stdout.write('\npruning broken links...\n')
-for filename in bin_dir.glob('*'):
-    if not filename.is_file():
-        filename.unlink()

python/damask/_configmaterial.py

@@ -108,6 +108,10 @@ class ConfigMaterial(Config):
             and grain- or cell-wise data. Defaults to None, in which case
             it is set as the path that contains _SIMPL_GEOMETRY/SPACING.
 
+        Notes
+        -----
+        Homogenization and phase entries are emtpy and need to be defined separately.
+
         Returns
         -------
         loaded : damask.ConfigMaterial

python/damask/_grid.py

@@ -31,14 +31,15 @@ class Grid:
 
         Parameters
         ----------
-        material : numpy.ndarray
+        material : numpy.ndarray of shape (:,:,:)
-            Material index array (3D).
+            Material indices. The shape of the material array defines
-        size : list or numpy.ndarray
+            the number of cells.
-            Physical size of the grid in meter.
+        size : list or numpy.ndarray of shape (3)
-        origin : list or numpy.ndarray, optional
+            Physical size of grid in meter.
-            Physical origin of the grid in meter.
+        origin : list or numpy.ndarray of shape (3), optional
+            Coordinates of grid origin in meter.
         comments : list of str, optional
-            Comment lines.
+            Comments, e.g. history of operations.
 
         """
         self.material = material

python/damask/_result.py

@@ -78,7 +78,7 @@ class Result:
     >>> r = damask.Result('my_file.hdf5')
     >>> r.add_Cauchy()
     >>> r.add_equivalent_Mises('sigma')
-    >>> r.save_VTK()
+    >>> r.export_VTK()
     >>> r_last = r.view('increments',-1)
     >>> sigma_vM_last = r_last.get('sigma_vM')
 
@@ -1377,13 +1377,13 @@ class Result:
         pool.join()
 
 
-    def save_XDMF(self,output='*'):
+    def export_XDMF(self,output='*'):
         """
         Write XDMF file to directly visualize data in DADF5 file.
 
         The XDMF format is only supported for structured grids
         with single phase and single constituent.
-        For other cases use `save_VTK`.
+        For other cases use `export_VTK`.
 
         Parameters
         ----------
@@ -1511,7 +1511,7 @@ class Result:
         return at_cell_ph,in_data_ph,at_cell_ho,in_data_ho
 
 
-    def save_VTK(self,output='*',mode='cell',constituents=None,fill_float=np.nan,fill_int=0,parallel=True):
+    def export_VTK(self,output='*',mode='cell',constituents=None,fill_float=np.nan,fill_int=0,parallel=True):
         """
         Export to VTK cell/point data.
 
@@ -1549,7 +1549,7 @@ class Result:
         else:
             raise ValueError(f'invalid mode {mode}')
 
-        v.set_comments(util.execution_stamp('Result','save_VTK'))
+        v.set_comments(util.execution_stamp('Result','export_VTK'))
 
         N_digits = int(np.floor(np.log10(max(1,int(self.increments[-1][10:])))))+1
 
@@ -1732,3 +1732,6 @@ class Result:
         if flatten: r = util.dict_flatten(r)
 
         return None if (type(r) == dict and r == {}) else r
+
+    save_VTK = export_VTK
+    save_XDMF = export_XDMF

python/damask/util.py

@@ -588,9 +588,11 @@ class _ProgressBar:
         fraction = (iteration+1) / self.total
         filled_length = int(self.bar_length * fraction)
 
-        if filled_length > int(self.bar_length * self.last_fraction):
+        delta_time = datetime.datetime.now() - self.start_time
+
+        if filled_length > int(self.bar_length * self.last_fraction) or \
+            delta_time > datetime.timedelta(minutes=1):
             bar = '█' * filled_length + '░' * (self.bar_length - filled_length)
-            delta_time = datetime.datetime.now() - self.start_time
             remaining_time = (self.total - (iteration+1)) * delta_time / (iteration+1)
             remaining_time -= datetime.timedelta(microseconds=remaining_time.microseconds)          # remove μs
             sys.stderr.write(f'\r{self.prefix} {bar} {fraction:>4.0%} ETA {remaining_time}')

python/tests/reference/Result/12grains6x7x8.material.yaml

@@ -15,8 +15,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         type: phenopowerlaw
@@ -32,8 +32,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         type: phenopowerlaw

python/tests/reference/Result/4grains2x4x3.material.yaml

@@ -647,8 +647,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         type: phenopowerlaw
@@ -664,8 +664,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         type: phenopowerlaw

python/tests/reference/Result/6grains6x7x8_single_phase.material.yaml

@@ -15,8 +15,8 @@ phase:
         a_sl: 2.25
         atol_xi: 1.0
         dot_gamma_0_sl: 0.001
-        h_0_sl_sl: 75e6
+        h_0_sl-sl: 75e6
-        h_sl_sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
+        h_sl-sl: [1, 1, 1.4, 1.4, 1.4, 1.4, 1.4]
         n_sl: 20
         output: [xi_sl]
         type: phenopowerlaw

python/tests/reference/Result/export_VTK/test_vtk[0-0-0].md5

@@ -0,0 +1 @@
+d5db0be324a959f00245e42704ea2d6f

python/tests/reference/Result/export_VTK/test_vtk[0-0-1].md5

@@ -0,0 +1 @@
+fe9ddaf54ac1fb785094251d29fcdc9c

python/tests/reference/Result/export_VTK/test_vtk[0-0-2].md5

@@ -0,0 +1 @@
+9c8ac0bb1eb4a7b9ebc3e5fd5840b0a4

python/tests/reference/Result/export_VTK/test_vtk[1-0-0].md5

@@ -0,0 +1 @@
+1b9ebd17c5257e2edba48d006f25d4e6

python/tests/reference/Result/export_VTK/test_vtk[1-0-1].md5

@@ -0,0 +1 @@
+8967bb1a6c329a072baaa83da534ae56

python/tests/reference/Result/export_VTK/test_vtk[1-0-2].md5

@@ -0,0 +1 @@
+752e8b6186ad2b6b1b5c781940669cb1

python/tests/reference/Result/save_VTK/test_vtk[0-0-0].md5

@@ -1 +0,0 @@
-6d4da1188f1de0a80142692e9e135aed

python/tests/reference/Result/save_VTK/test_vtk[0-0-1].md5

@@ -1 +0,0 @@
-5926c1f393871ee942750069545798a7

python/tests/reference/Result/save_VTK/test_vtk[0-0-2].md5

@@ -1 +0,0 @@
-743c9a868d54b78ee0648613249a0bdc

python/tests/reference/Result/save_VTK/test_vtk[1-0-0].md5

@@ -1 +0,0 @@
-09f5a7a6dd7a8e7d30e47aec07f7f616

python/tests/reference/Result/save_VTK/test_vtk[1-0-1].md5

@@ -1 +0,0 @@
-5715cfc5fc21c6d04590354f0941cf7b

python/tests/reference/Result/save_VTK/test_vtk[1-0-2].md5

@@ -1 +0,0 @@
-2f7b43ea8fe65173f47acb8281f0a919

python/tests/test_Result.py

@@ -369,7 +369,7 @@ class TestResult:
     def test_vtk(self,request,tmp_path,ref_path,update,patch_execution_stamp,patch_datetime_now,output,fname,inc):
         result = Result(ref_path/fname).view('increments',inc)
         os.chdir(tmp_path)
-        result.save_VTK(output)
+        result.export_VTK(output)
         fname = fname.split('.')[0]+f'_inc{(inc if type(inc) == int else inc[0]):0>2}.vti'
         last = ''
         for i in range(10):
@@ -382,9 +382,9 @@ class TestResult:
                         last = cur
             time.sleep(.5)
         if update:
-            with open((ref_path/'save_VTK'/request.node.name).with_suffix('.md5'),'w') as f:
+            with open((ref_path/'export_VTK'/request.node.name).with_suffix('.md5'),'w') as f:
                 f.write(cur)
-        with open((ref_path/'save_VTK'/request.node.name).with_suffix('.md5')) as f:
+        with open((ref_path/'export_VTK'/request.node.name).with_suffix('.md5')) as f:
             assert cur == f.read()
 
     @pytest.mark.parametrize('mode',['point','cell'])
@@ -392,7 +392,7 @@ class TestResult:
     def test_vtk_marc(self,tmp_path,ref_path,mode,output):
         os.chdir(tmp_path)
         result = Result(ref_path/'check_compile_job1.hdf5')
-        result.save_VTK(output,mode)
+        result.export_VTK(output,mode)
 
     def test_marc_coordinates(self,ref_path):
         result = Result(ref_path/'check_compile_job1.hdf5').view('increments',-1)
@@ -403,7 +403,7 @@ class TestResult:
     @pytest.mark.parametrize('mode',['point','cell'])
     def test_vtk_mode(self,tmp_path,single_phase,mode):
         os.chdir(tmp_path)
-        single_phase.save_VTK(mode=mode)
+        single_phase.export_VTK(mode=mode)
 
     def test_XDMF_datatypes(self,tmp_path,single_phase,update,ref_path):
         for shape in [('scalar',()),('vector',(3,)),('tensor',(3,3)),('matrix',(12,))]:
@@ -411,9 +411,7 @@ class TestResult:
                  single_phase.add_calculation(f"np.ones(np.shape(#F#)[0:1]+{shape[1]},'{dtype}')",f'{shape[0]}_{dtype}')
         fname = os.path.splitext(os.path.basename(single_phase.fname))[0]+'.xdmf'
         os.chdir(tmp_path)
-
+        single_phase.export_XDMF()
-        single_phase.save_XDMF()
-
         if update:
             shutil.copy(tmp_path/fname,ref_path/fname)
 
@@ -423,7 +421,7 @@ class TestResult:
     def test_XDMF_shape(self,tmp_path,single_phase):
         os.chdir(tmp_path)
 
-        single_phase.save_XDMF()
+        single_phase.export_XDMF()
         fname = os.path.splitext(os.path.basename(single_phase.fname))[0]+'.xdmf'
         reader_xdmf = vtk.vtkXdmfReader()
         reader_xdmf.SetFileName(fname)
@@ -431,7 +429,7 @@ class TestResult:
         dim_xdmf = reader_xdmf.GetOutput().GetDimensions()
         bounds_xdmf = reader_xdmf.GetOutput().GetBounds()
 
-        single_phase.view('increments',0).save_VTK()
+        single_phase.view('increments',0).export_VTK()
         fname = os.path.splitext(os.path.basename(single_phase.fname))[0]+'_inc00.vti'
         for i in range(10):                                                                         # waiting for parallel IO
             reader_vti = vtk.vtkXMLImageDataReader()
@@ -447,7 +445,7 @@ class TestResult:
 
     def test_XDMF_invalid(self,default):
         with pytest.raises(TypeError):
-            default.save_XDMF()
+            default.export_XDMF()
 
     @pytest.mark.parametrize('view,output,flatten,prune',
             [({},['F','P','F','L_p','F_e','F_p'],True,True),

src/phase_mechanical_plastic_dislotungsten.f90

@@ -149,7 +149,7 @@ module function plastic_dislotungsten_init() result(myPlasticity)
         prm%nonSchmid_neg = prm%P_sl
       endif
 
-      prm%h_sl_sl = lattice_interaction_SlipBySlip(N_sl,pl%get_as1dFloat('h_sl_sl'), &
+      prm%h_sl_sl = lattice_interaction_SlipBySlip(N_sl,pl%get_as1dFloat('h_sl-sl'), &
                                                    phase%get_asString('lattice'))
       prm%forestProjection = lattice_forestProjection_edge(N_sl,phase%get_asString('lattice'),&
                                                            phase%get_asFloat('c/a',defaultVal=0.0_pReal))

src/phase_mechanical_plastic_dislotwin.f90

@@ -194,7 +194,7 @@ module function plastic_dislotwin_init() result(myPlasticity)
     slipActive: if (prm%sum_N_sl > 0) then
       prm%P_sl    = lattice_SchmidMatrix_slip(N_sl,phase%get_asString('lattice'),&
                                               phase%get_asFloat('c/a',defaultVal=0.0_pReal))
-      prm%h_sl_sl = lattice_interaction_SlipBySlip(N_sl,pl%get_as1dFloat('h_sl_sl'), &
+      prm%h_sl_sl = lattice_interaction_SlipBySlip(N_sl,pl%get_as1dFloat('h_sl-sl'), &
                                                    phase%get_asString('lattice'))
       prm%forestProjection = lattice_forestProjection_edge(N_sl,phase%get_asString('lattice'),&
                                                            phase%get_asFloat('c/a',defaultVal=0.0_pReal))
@@ -271,7 +271,7 @@ module function plastic_dislotwin_init() result(myPlasticity)
       prm%P_tw  = lattice_SchmidMatrix_twin(N_tw,phase%get_asString('lattice'),&
                                                    phase%get_asFloat('c/a',defaultVal=0.0_pReal))
       prm%h_tw_tw   = lattice_interaction_TwinByTwin(N_tw,&
-                                                     pl%get_as1dFloat('h_tw_tw'), &
+                                                     pl%get_as1dFloat('h_tw-tw'), &
                                                      phase%get_asString('lattice'))
 
       prm%b_tw      = pl%get_as1dFloat('b_tw',     requiredSize=size(N_tw))
@@ -327,7 +327,7 @@ module function plastic_dislotwin_init() result(myPlasticity)
       prm%x_c_tr        = pl%get_asFloat('x_c_tr',  defaultVal=0.0_pReal) ! ToDo: How to handle that???
       prm%L_tr          = pl%get_asFloat('L_tr')
 
-      prm%h_tr_tr = lattice_interaction_TransByTrans(N_tr,pl%get_as1dFloat('h_tr_tr'), &
+      prm%h_tr_tr = lattice_interaction_TransByTrans(N_tr,pl%get_as1dFloat('h_tr-tr'), &
                                                      phase%get_asString('lattice'))
 
       prm%C66_tr  = lattice_C66_trans(N_tr,prm%C66,pl%get_asString('lattice_tr'), &
@@ -392,14 +392,14 @@ module function plastic_dislotwin_init() result(myPlasticity)
 
     slipAndTwinActive: if (prm%sum_N_sl * prm%sum_N_tw > 0) then
       prm%h_sl_tw = lattice_interaction_SlipByTwin(N_sl,N_tw,&
-                                                   pl%get_as1dFloat('h_sl_tw'), &
+                                                   pl%get_as1dFloat('h_sl-tw'), &
                                                    phase%get_asString('lattice'))
       if (prm%fccTwinTransNucleation .and. size(N_tw) /= 1) extmsg = trim(extmsg)//' interaction_sliptwin'
     endif slipAndTwinActive
 
     slipAndTransActive: if (prm%sum_N_sl * prm%sum_N_tr > 0) then
       prm%h_sl_tr = lattice_interaction_SlipByTrans(N_sl,N_tr,&
-                                                    pl%get_as1dFloat('h_sl_tr'), &
+                                                    pl%get_as1dFloat('h_sl-tr'), &
                                                     phase%get_asString('lattice'))
       if (prm%fccTwinTransNucleation .and. size(N_tr) /= 1) extmsg = trim(extmsg)//' interaction_sliptrans'
     endif slipAndTransActive

src/phase_mechanical_plastic_kinehardening.f90

@@ -125,7 +125,7 @@ module function plastic_kinehardening_init() result(myPlasticity)
         prm%nonSchmid_neg  = prm%P
       endif
       prm%interaction_SlipSlip = lattice_interaction_SlipBySlip(N_sl, &
-                                                                pl%get_as1dFloat('h_sl_sl'), &
+                                                                pl%get_as1dFloat('h_sl-sl'), &
                                                                 phase%get_asString('lattice'))
 
       xi_0          = pl%get_as1dFloat('xi_0',       requiredSize=size(N_sl))

src/phase_mechanical_plastic_nonlocal.f90

@@ -261,7 +261,7 @@ module function plastic_nonlocal_init() result(myPlasticity)
       endif
 
       prm%h_sl_sl = lattice_interaction_SlipBySlip(ini%N_sl, &
-                                                   pl%get_as1dFloat('h_sl_sl'), &
+                                                   pl%get_as1dFloat('h_sl-sl'), &
                                                    phase%get_asString('lattice'))
 
       prm%forestProjection_edge  = lattice_forestProjection_edge (ini%N_sl,phase%get_asString('lattice'),&

src/phase_mechanical_plastic_phenopowerlaw.f90

@@ -128,7 +128,7 @@ module function plastic_phenopowerlaw_init() result(myPlasticity)
         prm%nonSchmid_neg  = prm%P_sl
       endif
       prm%h_sl_sl   = lattice_interaction_SlipBySlip(N_sl, &
-                                                     pl%get_as1dFloat('h_sl_sl'), &
+                                                     pl%get_as1dFloat('h_sl-sl'), &
                                                      phase%get_asString('lattice'))
 
       xi_0_sl             = pl%get_as1dFloat('xi_0_sl',   requiredSize=size(N_sl))
@@ -139,7 +139,7 @@ module function plastic_phenopowerlaw_init() result(myPlasticity)
       prm%dot_gamma_0_sl  = pl%get_asFloat('dot_gamma_0_sl')
       prm%n_sl            = pl%get_asFloat('n_sl')
       prm%a_sl            = pl%get_asFloat('a_sl')
-      prm%h_0_sl_sl       = pl%get_asFloat('h_0_sl_sl')
+      prm%h_0_sl_sl       = pl%get_asFloat('h_0_sl-sl')
 
       ! expand: family => system
       xi_0_sl             = math_expand(xi_0_sl,      N_sl)
@@ -167,7 +167,7 @@ module function plastic_phenopowerlaw_init() result(myPlasticity)
       prm%P_tw            = lattice_SchmidMatrix_twin(N_tw,phase%get_asString('lattice'),&
                                                       phase%get_asFloat('c/a',defaultVal=0.0_pReal))
       prm%h_tw_tw         = lattice_interaction_TwinByTwin(N_tw,&
-                                                           pl%get_as1dFloat('h_tw_tw'), &
+                                                           pl%get_as1dFloat('h_tw-tw'), &
                                                            phase%get_asString('lattice'))
       prm%gamma_char      = lattice_characteristicShear_twin(N_tw,phase%get_asString('lattice'),&
                                                              phase%get_asFloat('c/a',defaultVal=0.0_pReal))
@@ -180,8 +180,8 @@ module function plastic_phenopowerlaw_init() result(myPlasticity)
       prm%c_4             = pl%get_asFloat('c_4',defaultVal=0.0_pReal)
       prm%dot_gamma_0_tw  = pl%get_asFloat('dot_gamma_0_tw')
       prm%n_tw            = pl%get_asFloat('n_tw')
-      prm%f_sat_sl_tw     = pl%get_asFloat('f_sat_sl_tw')
+      prm%f_sat_sl_tw     = pl%get_asFloat('f_sat_sl-tw')
-      prm%h_0_tw_tw       = pl%get_asFloat('h_0_tw_tw')
+      prm%h_0_tw_tw       = pl%get_asFloat('h_0_tw-tw')
 
       ! expand: family => system
       xi_0_tw       = math_expand(xi_0_tw,N_tw)
@@ -199,12 +199,12 @@ module function plastic_phenopowerlaw_init() result(myPlasticity)
 !--------------------------------------------------------------------------------------------------
 ! slip-twin related parameters
     slipAndTwinActive: if (prm%sum_N_sl > 0 .and. prm%sum_N_tw > 0) then
-      prm%h_0_tw_sl  = pl%get_asFloat('h_0_tw_sl')
+      prm%h_0_tw_sl  = pl%get_asFloat('h_0_tw-sl')
       prm%h_sl_tw    = lattice_interaction_SlipByTwin(N_sl,N_tw,&
-                                                      pl%get_as1dFloat('h_sl_tw'), &
+                                                      pl%get_as1dFloat('h_sl-tw'), &
                                                       phase%get_asString('lattice'))
       prm%h_tw_sl    = lattice_interaction_TwinBySlip(N_tw,N_sl,&
-                                                      pl%get_as1dFloat('h_tw_sl'), &
+                                                      pl%get_as1dFloat('h_tw-sl'), &
                                                       phase%get_asString('lattice'))
     else slipAndTwinActive
       allocate(prm%h_sl_tw(prm%sum_N_sl,prm%sum_N_tw))                                              ! at least one dimension is 0