diff --git a/src/HDF5_utilities.f90 b/src/HDF5_utilities.f90 index 802e5683d..1aeda566e 100644 --- a/src/HDF5_utilities.f90 +++ b/src/HDF5_utilities.f90 @@ -96,6 +96,7 @@ module HDF5_utilities public :: & HDF5_utilities_init, & + HDF5_chkerr, & HDF5_read, & HDF5_write, & HDF5_write_str, & @@ -125,45 +126,58 @@ subroutine HDF5_utilities_init call H5Open_f(hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (int(bit_size(0),SIZE_T)/=typeSize*8) & error stop 'Default integer size does not match H5T_NATIVE_INTEGER' call H5Tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (int(storage_size(0.0_pReal),SIZE_T)/=typeSize*8) & error stop 'pReal does not match H5T_NATIVE_DOUBLE' call H5get_libversion_f(HDF5_major,HDF5_minor,HDF5_release,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) compression_possible = (HDF5_major == 1 .and. HDF5_minor >= 12) ! https://forum.hdfgroup.org/t/6186 call H5Zfilter_avail_f(H5Z_FILTER_DEFLATE_F,avail,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) compression_possible = compression_possible .and. avail if (avail) then call H5Zget_filter_info_f(H5Z_FILTER_DEFLATE_F,configFlags,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) compression_possible = compression_possible .and. iand(H5Z_FILTER_ENCODE_ENABLED_F,configFlags) > 0 end if call H5Zfilter_avail_f(H5Z_FILTER_SHUFFLE_F,avail,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) compression_possible = compression_possible .and. avail if (avail) then call H5Zget_filter_info_f(H5Z_FILTER_SHUFFLE_F,configFlags,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) compression_possible = compression_possible .and. iand(H5Z_FILTER_ENCODE_ENABLED_F,configFlags) > 0 end if end subroutine HDF5_utilities_init +!-------------------------------------------------------------------------------------------------- +!> @brief Check for HDF5 error. +!-------------------------------------------------------------------------------------------------- +subroutine HDF5_chkerr(e) + + integer, intent(in) :: e + + + if (e<0) error stop 'HDF5 error' + +end subroutine HDF5_chkerr + + !-------------------------------------------------------------------------------------------------- !> @brief Open and initialize HDF5 file. !-------------------------------------------------------------------------------------------------- @@ -181,7 +195,7 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel) m = misc_optional(mode,'r') call H5Pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #ifdef PETSC if (misc_optional(parallel,.true.)) & @@ -190,24 +204,24 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel) #else call H5Pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr) #endif - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #endif if (m == 'w') then call H5Fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) elseif (m == 'a') then call H5Fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) elseif (m == 'r') then call H5Fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) else error stop 'unknown access mode' end if call H5Pclose_f(plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end function HDF5_openFile @@ -222,7 +236,7 @@ subroutine HDF5_closeFile(fileHandle) integer :: hdferr call H5Fclose_f(fileHandle,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_closeFile @@ -241,19 +255,19 @@ integer(HID_T) function HDF5_addGroup(fileHandle,groupName) !------------------------------------------------------------------------------------------------- ! creating a property list for data access properties call H5Pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !------------------------------------------------------------------------------------------------- ! setting I/O mode to collective #ifdef PETSC call H5Pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #endif !------------------------------------------------------------------------------------------------- ! Create group call H5Gcreate_f(fileHandle, trim(groupName), HDF5_addGroup, hdferr, OBJECT_NAMELEN_DEFAULT_F,gapl_id = aplist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pclose_f(aplist_id,hdferr) @@ -277,19 +291,19 @@ integer(HID_T) function HDF5_openGroup(fileHandle,groupName) !------------------------------------------------------------------------------------------------- ! creating a property list for data access properties call H5Pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !------------------------------------------------------------------------------------------------- ! setting I/O mode to collective #ifdef PETSC call H5Pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #endif !------------------------------------------------------------------------------------------------- ! opening the group call H5Gopen_f(fileHandle, trim(groupName), HDF5_openGroup, hdferr, gapl_id = aplist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pclose_f(aplist_id,hdferr) @@ -306,7 +320,7 @@ subroutine HDF5_closeGroup(group_id) integer :: hdferr call H5Gclose_f(group_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_closeGroup @@ -326,11 +340,11 @@ logical function HDF5_objectExists(loc_id,path) p = trim(misc_optional(path,'.')) call H5Lexists_f(loc_id, p, HDF5_objectExists, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (HDF5_objectExists) then call H5Oexists_by_name_f(loc_id, p, HDF5_objectExists, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if end function HDF5_objectExists @@ -359,24 +373,24 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path) ptr(1) = c_loc(attrValue_(1)) call H5Screate_f(H5S_SCALAR_F,space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aexists_by_name_f(loc_id,p,attrLabel,attrExists,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (attrExists) then call H5Adelete_by_name_f(loc_id,p,attrLabel,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Acreate_by_name_f(loc_id,p,trim(attrLabel),H5T_STRING,space_id,attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Awrite_f(attr_id, H5T_STRING, c_loc(ptr), hdferr) ! ptr instead of c_loc(ptr) works on gfortran, not on ifort - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aclose_f(attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_addAttribute_str @@ -400,24 +414,24 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path) p = trim(misc_optional(path,'.')) call H5Screate_f(H5S_SCALAR_F,space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aexists_by_name_f(loc_id,p,attrLabel,attrExists,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (attrExists) then call H5Adelete_by_name_f(loc_id,p,attrLabel,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Acreate_by_name_f(loc_id,p,trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, int([1],HSIZE_T), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aclose_f(attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_addAttribute_int @@ -441,24 +455,24 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path) p = trim(misc_optional(path,'.')) call H5Screate_f(H5S_SCALAR_F,space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aexists_by_name_f(loc_id,p,attrLabel,attrExists,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (attrExists) then call H5Adelete_by_name_f(loc_id,p,attrLabel,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Acreate_by_name_f(loc_id,p,trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, int([1],HSIZE_T), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aclose_f(attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_addAttribute_real @@ -489,24 +503,24 @@ subroutine HDF5_addAttribute_str_array(loc_id,attrLabel,attrValue,path) end do call H5Screate_simple_f(1,shape(attrValue_,kind=HSIZE_T),space_id,hdferr,shape(attrValue_,kind=HSIZE_T)) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aexists_by_name_f(loc_id,p,attrLabel,attrExists,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (attrExists) then call H5Adelete_by_name_f(loc_id,p,attrLabel,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Acreate_by_name_f(loc_id,p,trim(attrLabel),H5T_STRING,space_id,attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Awrite_f(attr_id, H5T_STRING, c_loc(ptr), hdferr) ! ptr instead of c_loc(ptr) works on gfortran, not on ifort - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aclose_f(attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_addAttribute_str_array @@ -533,24 +547,24 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path) array_size = size(attrValue,kind=HSIZE_T) call H5Screate_simple_f(1, array_size, space_id, hdferr, array_size) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aexists_by_name_f(loc_id,p,attrLabel,attrExists,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (attrExists) then call H5Adelete_by_name_f(loc_id,p,attrLabel,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Acreate_by_name_f(loc_id,p,trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, array_size, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aclose_f(attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_addAttribute_int_array @@ -577,24 +591,24 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path) array_size = size(attrValue,kind=HSIZE_T) call H5Screate_simple_f(1, array_size, space_id, hdferr, array_size) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aexists_by_name_f(loc_id,p,attrLabel,attrExists,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (attrExists) then call H5Adelete_by_name_f(loc_id,p,attrLabel,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Acreate_by_name_f(loc_id,p,trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, array_size, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Aclose_f(attr_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_addAttribute_real_array @@ -610,13 +624,13 @@ subroutine HDF5_setLink(loc_id,target_name,link_name) logical :: linkExists call H5Lexists_f(loc_id, link_name,linkExists, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (linkExists) then call H5Ldelete_f(loc_id,link_name, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Lcreate_soft_f(target_name, loc_id, link_name, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_setLink @@ -649,7 +663,7 @@ subroutine HDF5_read_real1(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -683,7 +697,7 @@ subroutine HDF5_read_real2(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -717,7 +731,7 @@ subroutine HDF5_read_real3(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -752,7 +766,7 @@ subroutine HDF5_read_real4(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -787,7 +801,7 @@ subroutine HDF5_read_real5(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -822,7 +836,7 @@ if (any(totalShape == 0)) return call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -857,7 +871,7 @@ subroutine HDF5_read_real7(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -892,7 +906,7 @@ if (any(totalShape == 0)) return call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -927,7 +941,7 @@ subroutine HDF5_read_int2(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -961,7 +975,7 @@ subroutine HDF5_read_int3(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -995,7 +1009,7 @@ subroutine HDF5_read_int4(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -1029,7 +1043,7 @@ subroutine HDF5_read_int5(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -1064,7 +1078,7 @@ subroutine HDF5_read_int6(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -1099,7 +1113,7 @@ subroutine HDF5_read_int7(dataset,loc_id,datasetName,parallel) call H5Dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) @@ -1137,7 +1151,7 @@ subroutine HDF5_write_real1(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1174,7 +1188,7 @@ subroutine HDF5_write_real2(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1211,7 +1225,7 @@ subroutine HDF5_write_real3(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1248,7 +1262,7 @@ subroutine HDF5_write_real4(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1286,7 +1300,7 @@ subroutine HDF5_write_real5(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1323,7 +1337,7 @@ subroutine HDF5_write_real6(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1360,7 +1374,7 @@ subroutine HDF5_write_real7(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1420,7 +1434,7 @@ subroutine HDF5_write_real(dataset,loc_id,datasetName,parallel) call H5Dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) end select - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1447,46 +1461,46 @@ subroutine HDF5_write_str(dataset,loc_id,datasetName) dataset_ = trim(dataset) call H5Tcopy_f(H5T_C_S1, filetype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tset_size_f(filetype_id, len(dataset_,SIZE_T)+1_SIZE_T, hdferr) ! +1 for NULL - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tcopy_f(H5T_FORTRAN_S1, memtype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tset_size_f(memtype_id, len(dataset_,SIZE_T), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pcreate_f(H5P_DATASET_CREATE_F, dcpl, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pset_chunk_f(dcpl, 1, [1_HSIZE_T], hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pset_Fletcher32_f(dcpl,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (compression_possible .and. len(dataset,pI64) > 1024_pI64*256_pI64) then call H5Pset_shuffle_f(dcpl, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pset_deflate_f(dcpl, 6, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call H5Screate_simple_f(1, [1_HSIZE_T], space_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) CALL H5Dcreate_f(loc_id, datasetName, filetype_id, space_id, dataset_id, hdferr, dcpl) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dwrite_f(dataset_id, memtype_id, c_loc(dataset_(1:1)), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pclose_f(dcpl, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dclose_f(dataset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(space_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(memtype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(filetype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine HDF5_write_str @@ -1522,7 +1536,7 @@ subroutine HDF5_write_int1(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1559,7 +1573,7 @@ subroutine HDF5_write_int2(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1596,7 +1610,7 @@ subroutine HDF5_write_int3(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1633,7 +1647,7 @@ subroutine HDF5_write_int4(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1670,7 +1684,7 @@ subroutine HDF5_write_int5(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1707,7 +1721,7 @@ subroutine HDF5_write_int6(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1744,7 +1758,7 @@ subroutine HDF5_write_int7(dataset,loc_id,datasetName,parallel) if (product(totalShape) /= 0) then call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1804,7 +1818,7 @@ subroutine HDF5_write_int(dataset,loc_id,datasetName,parallel) call H5Dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) end select - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if call finalize_write(plist_id, dset_id, filespace_id, memspace_id) @@ -1837,7 +1851,7 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_ !------------------------------------------------------------------------------------------------- ! creating a property list for transfer properties (is collective for MPI) call H5Pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- readSize = 0_MPI_INTEGER_KIND @@ -1845,7 +1859,7 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_ #ifdef PETSC if (parallel) then call H5Pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call MPI_Allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_INTEGER,MPI_SUM,MPI_COMM_WORLD,err_MPI) ! get total output size over each process if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error' end if @@ -1856,35 +1870,35 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_ if (any(globalShape == 0)) then call H5Pclose_f(plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) return end if !-------------------------------------------------------------------------------------------------- ! create dataspace in memory (local shape) call H5Screate_simple_f(size(localShape), localShape, memspace_id, hdferr, localShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! creating a property list for IO and set it to collective call H5Pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #ifdef PETSC call H5Pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #endif !-------------------------------------------------------------------------------------------------- ! open the dataset in the file and get the space ID call H5Dopen_f(loc_id,datasetName,dset_id,hdferr, dapl_id = aplist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dget_space_f(dset_id, filespace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! select a hyperslab (the portion of the current process) in the file call H5Sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, localShape, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine initialize_read @@ -1898,15 +1912,15 @@ subroutine finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id integer :: hdferr call H5Pclose_f(plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pclose_f(aplist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dclose_f(dset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(filespace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(memspace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine finalize_read @@ -1939,11 +1953,11 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, & !------------------------------------------------------------------------------------------------- ! creating a property list for transfer properties (is collective when writing in parallel) call H5Pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #ifdef PETSC if (parallel) then call H5Pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if #endif @@ -1964,43 +1978,43 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, & !-------------------------------------------------------------------------------------------------- ! chunk dataset, enable compression for larger datasets call H5Pcreate_f(H5P_DATASET_CREATE_F, dcpl, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (product(totalShape) > 0) then call H5Pset_Fletcher32_f(dcpl,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (product(totalShape) >= chunkSize*2_HSIZE_T) then call H5Pset_chunk_f(dcpl, size(totalShape), getChunks(totalShape,chunkSize), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) if (compression_possible) then call H5Pset_shuffle_f(dcpl, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pset_deflate_f(dcpl, 6, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if else call H5Pset_chunk_f(dcpl, size(totalShape), totalShape, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end if end if !-------------------------------------------------------------------------------------------------- ! create dataspace in memory (local shape) and in file (global shape) call H5Screate_simple_f(size(myShape), myShape, memspace_id, hdferr, myShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Screate_simple_f(size(totalShape), totalShape, filespace_id, hdferr, totalShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! create dataset in the file and select a hyperslab from it (the portion of the current process) call H5Dcreate_f(loc_id, trim(datasetName), datatype, filespace_id, dset_id, hdferr, dcpl) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, myShape, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Pclose_f(dcpl , hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) contains !------------------------------------------------------------------------------------------------ @@ -2029,13 +2043,13 @@ subroutine finalize_write(plist_id, dset_id, filespace_id, memspace_id) integer :: hdferr call H5Pclose_f(plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dclose_f(dset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(filespace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(memspace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) end subroutine finalize_write diff --git a/src/parallelization.f90 b/src/parallelization.f90 index 3feea8cc3..6bca36c2a 100644 --- a/src/parallelization.f90 +++ b/src/parallelization.f90 @@ -46,6 +46,7 @@ end subroutine parallelization_bcast_str #else public :: & parallelization_init, & + parallelization_chkerr, & parallelization_bcast_str contains @@ -154,6 +155,19 @@ subroutine parallelization_init() end subroutine parallelization_init +!-------------------------------------------------------------------------------------------------- +!> @brief Check for MPI error. +!-------------------------------------------------------------------------------------------------- +subroutine parallelization_chkerr(e) + + integer(MPI_INTEGER_KIND), intent(in) :: e + + + if (e/=0_MPI_INTEGER_KIND) error stop 'MPI error' + +end subroutine parallelization_chkerr + + !-------------------------------------------------------------------------------------------------- !> @brief Broadcast a string from process 0. !-------------------------------------------------------------------------------------------------- diff --git a/src/result.f90 b/src/result.f90 index 112055410..0f29e9e53 100644 --- a/src/result.f90 +++ b/src/result.f90 @@ -497,7 +497,7 @@ subroutine result_mapping_phase(ID,entry,label) writeSize(worldrank) = size(entry(1,:)) ! total number of entries of this process call H5Pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #ifndef PETSC entryGlobal = int(entry -1,pI64) ! 0-based @@ -505,10 +505,10 @@ subroutine result_mapping_phase(ID,entry,label) !-------------------------------------------------------------------------------------------------- ! MPI settings and communication call H5Pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call MPI_Allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INTEGER,MPI_SUM,MPI_COMM_WORLD,err_MPI) ! get output at each process - if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error' + call parallelization_chkerr(err_MPI) entryOffset = 0_pI64 do co = 1, size(ID,1) @@ -517,7 +517,7 @@ subroutine result_mapping_phase(ID,entry,label) end do end do call MPI_Allreduce(MPI_IN_PLACE,entryOffset,size(entryOffset),MPI_INTEGER8,MPI_SUM,MPI_COMM_WORLD,err_MPI)! get offset at each process - if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error' + call parallelization_chkerr(err_MPI) entryOffset(:,worldrank) = sum(entryOffset(:,0:worldrank-1),2) do co = 1, size(ID,1) do ce = 1, size(ID,2) @@ -533,80 +533,80 @@ subroutine result_mapping_phase(ID,entry,label) !--------------------------------------------------------------------------------------------------- ! compound type: label(ID) + entry call H5Tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tget_size_f(dt_id, type_size_string, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) pI64_t = h5kind_to_type(kind(entryGlobal),H5_INTEGER_KIND) call H5Tget_size_f(pI64_t, type_size_int, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(dtype_id, 'label', 0_SIZE_T, dt_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(dtype_id, 'entry', type_size_string, pI64_t, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! create memory types for each component of the compound type call H5Tcreate_f(H5T_COMPOUND_F, type_size_string, label_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(label_id, 'label', 0_SIZE_T, dt_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tcreate_f(H5T_COMPOUND_F, type_size_int, entry_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(entry_id, 'entry', 0_SIZE_T, pI64_t, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(dt_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! create dataspace in memory (local shape = hyperslab) and in file (global shape) call H5Screate_simple_f(2,myShape,memspace_id,hdferr,myShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Screate_simple_f(2,totalShape,filespace_id,hdferr,totalShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! write the components of the compound type individually call H5Pset_preserve_f(plist_id, .true., hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) loc_id = result_openGroup('/cell_to') call H5Dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dwrite_f(dset_id, label_id, reshape(label(pack(ID,.true.)),myShape), & myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dwrite_f(dset_id, entry_id, reshape(pack(entryGlobal,.true.),myShape), & myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! close all call HDF5_closeGroup(loc_id) call H5Pclose_f(plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(filespace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(memspace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dclose_f(dset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(dtype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(label_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(entry_id, hdferr) call executionStamp('cell_to/phase','cell ID and constituent ID to phase results') @@ -653,7 +653,7 @@ subroutine result_mapping_homogenization(ID,entry,label) writeSize(worldrank) = size(entry) ! total number of entries of this process call H5Pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) #ifndef PETSC entryGlobal = int(entry -1,pI64) ! 0-based @@ -661,17 +661,17 @@ subroutine result_mapping_homogenization(ID,entry,label) !-------------------------------------------------------------------------------------------------- ! MPI settings and communication call H5Pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call MPI_Allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INTEGER,MPI_SUM,MPI_COMM_WORLD,err_MPI) ! get output at each process - if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error' + call parallelization_chkerr(err_MPI) entryOffset = 0_pI64 do ce = 1, size(ID,1) entryOffset(ID(ce),worldrank) = entryOffset(ID(ce),worldrank) +1_pI64 end do call MPI_Allreduce(MPI_IN_PLACE,entryOffset,size(entryOffset),MPI_INTEGER8,MPI_SUM,MPI_COMM_WORLD,err_MPI)! get offset at each process - if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error' + call parallelization_chkerr(err_MPI) entryOffset(:,worldrank) = sum(entryOffset(:,0:worldrank-1),2) do ce = 1, size(ID,1) entryGlobal(ce) = int(entry(ce),pI64) -1_pI64 + entryOffset(ID(ce),worldrank) @@ -685,82 +685,82 @@ subroutine result_mapping_homogenization(ID,entry,label) !--------------------------------------------------------------------------------------------------- ! compound type: label(ID) + entry call H5Tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tget_size_f(dt_id, type_size_string, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) pI64_t = h5kind_to_type(kind(entryGlobal),H5_INTEGER_KIND) call H5Tget_size_f(pI64_t, type_size_int, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(dtype_id, 'label', 0_SIZE_T, dt_id,hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(dtype_id, 'entry', type_size_string, pI64_t, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! create memory types for each component of the compound type call H5Tcreate_f(H5T_COMPOUND_F, type_size_string, label_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(label_id, 'label', 0_SIZE_T, dt_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tcreate_f(H5T_COMPOUND_F, type_size_int, entry_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tinsert_f(entry_id, 'entry', 0_SIZE_T, pI64_t, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(dt_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! create dataspace in memory (local shape = hyperslab) and in file (global shape) call H5Screate_simple_f(1,myShape,memspace_id,hdferr,myShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Screate_simple_f(1,totalShape,filespace_id,hdferr,totalShape) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! write the components of the compound type individually call H5Pset_preserve_f(plist_id, .true., hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) loc_id = result_openGroup('/cell_to') call H5Dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dwrite_f(dset_id, label_id, reshape(label(pack(ID,.true.)),myShape), & myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dwrite_f(dset_id, entry_id, reshape(pack(entryGlobal,.true.),myShape), & myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) !-------------------------------------------------------------------------------------------------- ! close all call HDF5_closeGroup(loc_id) call H5Pclose_f(plist_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(filespace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Sclose_f(memspace_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Dclose_f(dset_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(dtype_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(label_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call H5Tclose_f(entry_id, hdferr) - if (hdferr < 0) error stop 'HDF5 error' + call HDF5_chkerr(hdferr) call executionStamp('cell_to/homogenization','cell ID to homogenization results')