clean root directory, symbolic links for transition compatibility

This commit is contained in:
Martin Diehl 2017-05-15 17:40:49 +02:00
parent 3633a036cd
commit c813e98d22
6 changed files with 260 additions and 257 deletions

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# sets up an environment for DAMASK on tcsh
# usage: source DAMASK_env.csh
set CALLED=($_)
set DIRNAME=`dirname $CALLED[2]`
set DAMASK_ROOT=`python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" $DIRNAME`
source $DAMASK_ROOT/CONFIG
# if DAMASK_BIN is present and not in $PATH, add it
if ( $?DAMASK_BIN) then
set MATCH=`echo :${PATH}: | grep ${DAMASK_BIN}:`
if ( "x$MATCH" == "x" ) then
set PATH=${DAMASK_BIN}:${PATH}
endif
endif
set SOLVER=`which DAMASK_spectral`
set PROCESSING=`which postResults`
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
set DAMASK_NUM_THREADS=1
endif
# according to http://software.intel.com/en-us/forums/topic/501500
# this seems to make sense for the stack size
if ( `which free` != "free: Command not found." ) then
set freeMem=`free -k | grep -E '(Mem|Speicher):' | awk '{print $4;}'`
set heap=` expr $freeMem / 2`
set stack=`expr $freeMem / $DAMASK_NUM_THREADS / 2`
# http://superuser.com/questions/220059/what-parameters-has-ulimit
limit datasize $heap # maximum heap size (kB)
limit stacksize $stack # maximum stack size (kB)
endif
if ( `limit | grep memoryuse` != "" ) then
limit memoryuse unlimited # maximum physical memory size
endif
if ( `limit | grep vmemoryuse` != "" ) then
limit vmemoryuse unlimited # maximum virtual memory size
endif
# disable output in case of scp
if ( $?prompt ) then
echo ''
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo Using environment with ...
echo "DAMASK $DAMASK_ROOT"
echo "Spectral Solver $SOLVER"
echo "Post Processing $PROCESSING"
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
if ( $?PETSC_DIR) then
echo "PETSc location $PETSC_DIR"
endif
if ( $?MSC_ROOT) then
echo "MSC.Marc/Mentat $MSC_ROOT"
endif
echo
echo `limit datasize`
echo `limit stacksize`
endif
setenv DAMASK_NUM_THREADS $DAMASK_NUM_THREADS
setenv PYTHONPATH $DAMASK_ROOT/lib:$PYTHONPATH

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DAMASK_env.csh Symbolic link
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env/DAMASK_env.csh

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# sets up an environment for DAMASK on bash
# usage: source DAMASK_env.sh
if [ "$OSTYPE" == "linux-gnu" ] || [ "$OSTYPE" == 'linux' ]; then
DAMASK_ROOT=$(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$(dirname $BASH_SOURCE)")
else
[[ "${BASH_SOURCE::1}" == "/" ]] && BASE="" || BASE="$(pwd)/"
STAT=$(stat "$(dirname $BASE$BASH_SOURCE)")
DAMASK_ROOT=${STAT##* }
fi
# shorthand command to change to DAMASK_ROOT directory
eval "function damask() { cd $DAMASK_ROOT; }"
# defining set() allows to source the same file for tcsh and bash, with and without space around =
set() {
export $1$2$3
}
source $DAMASK_ROOT/CONFIG
unset -f set
# add DAMASK_BIN if present but not yet in $PATH
if [[ "x$DAMASK_BIN" != "x" && ! $(echo ":$PATH:" | grep $DAMASK_BIN:) ]]; then
export PATH=$DAMASK_BIN:$PATH
fi
SOLVER=$(which DAMASK_spectral || true 2>/dev/null)
if [ "x$SOLVER" == "x" ]; then
SOLVER='Not found!'
fi
PROCESSING=$(which postResults || true 2>/dev/null)
if [ "x$PROCESSING" == "x" ]; then
PROCESSING='Not found!'
fi
if [ "x$DAMASK_NUM_THREADS" == "x" ]; then
DAMASK_NUM_THREADS=1
fi
# according to http://software.intel.com/en-us/forums/topic/501500
# this seems to make sense for the stack size
FREE=$(type -p free 2>/dev/null)
if [ "x$FREE" != "x" ]; then
freeMem=$(free -k | grep -E '(Mem|Speicher):' | awk '{print $4;}')
# http://superuser.com/questions/220059/what-parameters-has-ulimit
ulimit -d unlimited 2>/dev/null \
|| ulimit -d $(expr $freeMem / 2) 2>/dev/null # maximum heap size (kB)
ulimit -s unlimited 2>/dev/null \
|| ulimit -s $(expr $freeMem / $DAMASK_NUM_THREADS / 2) 2>/dev/null # maximum stack size (kB)
fi
ulimit -v unlimited 2>/dev/null # maximum virtual memory size
ulimit -m unlimited 2>/dev/null # maximum physical memory size
# disable output in case of scp
if [ ! -z "$PS1" ]; then
echo
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo Using environment with ...
echo "DAMASK $DAMASK_ROOT"
echo "Spectral Solver $SOLVER"
echo "Post Processing $PROCESSING"
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
if [ "x$PETSC_DIR" != "x" ]; then
echo "PETSc location $PETSC_DIR"
[[ $(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR") == $PETSC_DIR ]] \
|| echo " ~~> "$(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR")
fi
echo "MSC.Marc/Mentat $MSC_ROOT"
echo
echo -n "heap size "
[[ "$(ulimit -d)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -d) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
echo -n "stack size "
[[ "$(ulimit -s)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -s) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
fi
export DAMASK_NUM_THREADS
export PYTHONPATH=$DAMASK_ROOT/lib:$PYTHONPATH
for var in BASE STAT SOLVER PROCESSING FREE DAMASK_BIN; do
unset "${var}"
done
for var in DAMASK MSC; do
unset "${var}_ROOT"
done
for var in ABAQUS MARC; do
unset "${var}_VERSION"
done

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DAMASK_env.sh Symbolic link
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env/DAMASK_env.sh

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# sets up an environment for DAMASK on zsh
# usage: source DAMASK_env.zsh
DAMASK_ROOT=${0:a:h}
# shorthand command to change to DAMASK_ROOT directory
eval "function damask() { cd $DAMASK_ROOT; }"
# defining set() allows to source the same file for tcsh and zsh, with and without space around =
set() {
export $1$2$3
}
source $DAMASK_ROOT/CONFIG
unset -f set
# add DAMASK_BIN if present but not yet in $PATH
MATCH=`echo ":$PATH:" | grep $DAMASK_BIN:`
if [[ ( "x$DAMASK_BIN" != "x" ) && ( "x$MATCH" = "x" ) ]]; then
export PATH=$DAMASK_BIN:$PATH
fi
SOLVER=`which DAMASK_spectral || True 2>/dev/null`
PROCESSING=`which postResults || True 2>/dev/null`
if [ "x$DAMASK_NUM_THREADS" = "x" ]; then
DAMASK_NUM_THREADS=1
fi
# according to http://software.intel.com/en-us/forums/topic/501500
# this seems to make sense for the stack size
if [ "`which free 2>/dev/null`" != "free not found" ]; then
freeMem=`free -k | grep -E '(Mem|Speicher):' | awk '{print $4;}'`
# http://superuser.com/questions/220059/what-parameters-has-ulimit
#ulimit -d `expr $freeMem / 2` 2>/dev/null # maximum heap size (kB)
ulimit -s `expr $freeMem / $DAMASK_NUM_THREADS / 2` 2>/dev/null # maximum stack size (kB)
fi
ulimit -v unlimited 2>/dev/null # maximum virtual memory size
ulimit -m unlimited 2>/dev/null # maximum physical memory size
# disable output in case of scp
if [ ! -z "$PS1" ]; then
echo
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo "Using environment with ..."
echo "DAMASK $DAMASK_ROOT"
echo "Spectral Solver $SOLVER"
echo "Post Processing $PROCESSING"
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
if [ "x$PETSC_DIR" != "x" ]; then
echo "PETSc location $PETSC_DIR"
[[ $(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR") == $PETSC_DIR ]] \
|| echo " ~~> "$(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR")
fi
[[ "x$PETSC_ARCH" == "x" ]] \
|| echo "PETSc architecture $PETSC_ARCH"
echo "MSC.Marc/Mentat $MSC_ROOT"
echo
echo -n "heap size "
[[ "$(ulimit -d)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -d) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
echo -n "stack size "
[[ "$(ulimit -s)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -s) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
fi
export DAMASK_NUM_THREADS
export PYTHONPATH=$DAMASK_ROOT/lib:$PYTHONPATH
for var in BASE STAT SOLVER PROCESSING FREE DAMASK_BIN MATCH; do
unset "${var}"
done
for var in DAMASK MSC; do
unset "${var}_ROOT"
done
for var in ABAQUS MARC; do
unset "${var}_VERSION"
done

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DAMASK_env.zsh Symbolic link
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env/DAMASK_env.zsh

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env/DAMASK_env.csh vendored Normal file
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# sets up an environment for DAMASK on tcsh
# usage: source DAMASK_env.csh
set CALLED=($_)
set DIRNAME=`dirname $CALLED[2]`
set DAMASK_ROOT=`python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" $DIRNAME`
source $DAMASK_ROOT/CONFIG
# if DAMASK_BIN is present and not in $PATH, add it
if ( $?DAMASK_BIN) then
set MATCH=`echo :${PATH}: | grep ${DAMASK_BIN}:`
if ( "x$MATCH" == "x" ) then
set PATH=${DAMASK_BIN}:${PATH}
endif
endif
set SOLVER=`which DAMASK_spectral`
set PROCESSING=`which postResults`
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
set DAMASK_NUM_THREADS=1
endif
# according to http://software.intel.com/en-us/forums/topic/501500
# this seems to make sense for the stack size
if ( `which free` != "free: Command not found." ) then
set freeMem=`free -k | grep -E '(Mem|Speicher):' | awk '{print $4;}'`
set heap=` expr $freeMem / 2`
set stack=`expr $freeMem / $DAMASK_NUM_THREADS / 2`
# http://superuser.com/questions/220059/what-parameters-has-ulimit
limit datasize $heap # maximum heap size (kB)
limit stacksize $stack # maximum stack size (kB)
endif
if ( `limit | grep memoryuse` != "" ) then
limit memoryuse unlimited # maximum physical memory size
endif
if ( `limit | grep vmemoryuse` != "" ) then
limit vmemoryuse unlimited # maximum virtual memory size
endif
# disable output in case of scp
if ( $?prompt ) then
echo ''
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo Using environment with ...
echo "DAMASK $DAMASK_ROOT"
echo "Spectral Solver $SOLVER"
echo "Post Processing $PROCESSING"
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
if ( $?PETSC_DIR) then
echo "PETSc location $PETSC_DIR"
endif
if ( $?MSC_ROOT) then
echo "MSC.Marc/Mentat $MSC_ROOT"
endif
echo
echo `limit datasize`
echo `limit stacksize`
endif
setenv DAMASK_NUM_THREADS $DAMASK_NUM_THREADS
setenv PYTHONPATH $DAMASK_ROOT/lib:$PYTHONPATH

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env/DAMASK_env.sh vendored Normal file
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# sets up an environment for DAMASK on bash
# usage: source DAMASK_env.sh
if [ "$OSTYPE" == "linux-gnu" ] || [ "$OSTYPE" == 'linux' ]; then
DAMASK_ROOT=$(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$(dirname $BASH_SOURCE)")
else
[[ "${BASH_SOURCE::1}" == "/" ]] && BASE="" || BASE="$(pwd)/"
STAT=$(stat "$(dirname $BASE$BASH_SOURCE)")
DAMASK_ROOT=${STAT##* }
fi
# shorthand command to change to DAMASK_ROOT directory
eval "function damask() { cd $DAMASK_ROOT; }"
# defining set() allows to source the same file for tcsh and bash, with and without space around =
set() {
export $1$2$3
}
source $DAMASK_ROOT/CONFIG
unset -f set
# add DAMASK_BIN if present but not yet in $PATH
if [[ "x$DAMASK_BIN" != "x" && ! $(echo ":$PATH:" | grep $DAMASK_BIN:) ]]; then
export PATH=$DAMASK_BIN:$PATH
fi
SOLVER=$(which DAMASK_spectral || true 2>/dev/null)
if [ "x$SOLVER" == "x" ]; then
SOLVER='Not found!'
fi
PROCESSING=$(which postResults || true 2>/dev/null)
if [ "x$PROCESSING" == "x" ]; then
PROCESSING='Not found!'
fi
if [ "x$DAMASK_NUM_THREADS" == "x" ]; then
DAMASK_NUM_THREADS=1
fi
# according to http://software.intel.com/en-us/forums/topic/501500
# this seems to make sense for the stack size
FREE=$(type -p free 2>/dev/null)
if [ "x$FREE" != "x" ]; then
freeMem=$(free -k | grep -E '(Mem|Speicher):' | awk '{print $4;}')
# http://superuser.com/questions/220059/what-parameters-has-ulimit
ulimit -d unlimited 2>/dev/null \
|| ulimit -d $(expr $freeMem / 2) 2>/dev/null # maximum heap size (kB)
ulimit -s unlimited 2>/dev/null \
|| ulimit -s $(expr $freeMem / $DAMASK_NUM_THREADS / 2) 2>/dev/null # maximum stack size (kB)
fi
ulimit -v unlimited 2>/dev/null # maximum virtual memory size
ulimit -m unlimited 2>/dev/null # maximum physical memory size
# disable output in case of scp
if [ ! -z "$PS1" ]; then
echo
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo Using environment with ...
echo "DAMASK $DAMASK_ROOT"
echo "Spectral Solver $SOLVER"
echo "Post Processing $PROCESSING"
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
if [ "x$PETSC_DIR" != "x" ]; then
echo "PETSc location $PETSC_DIR"
[[ $(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR") == $PETSC_DIR ]] \
|| echo " ~~> "$(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR")
fi
echo "MSC.Marc/Mentat $MSC_ROOT"
echo
echo -n "heap size "
[[ "$(ulimit -d)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -d) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
echo -n "stack size "
[[ "$(ulimit -s)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -s) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
fi
export DAMASK_NUM_THREADS
export PYTHONPATH=$DAMASK_ROOT/lib:$PYTHONPATH
for var in BASE STAT SOLVER PROCESSING FREE DAMASK_BIN; do
unset "${var}"
done
for var in DAMASK MSC; do
unset "${var}_ROOT"
done
for var in ABAQUS MARC; do
unset "${var}_VERSION"
done

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env/DAMASK_env.zsh vendored Normal file
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# sets up an environment for DAMASK on zsh
# usage: source DAMASK_env.zsh
DAMASK_ROOT=${0:a:h}
# shorthand command to change to DAMASK_ROOT directory
eval "function damask() { cd $DAMASK_ROOT; }"
# defining set() allows to source the same file for tcsh and zsh, with and without space around =
set() {
export $1$2$3
}
source $DAMASK_ROOT/CONFIG
unset -f set
# add DAMASK_BIN if present but not yet in $PATH
MATCH=`echo ":$PATH:" | grep $DAMASK_BIN:`
if [[ ( "x$DAMASK_BIN" != "x" ) && ( "x$MATCH" = "x" ) ]]; then
export PATH=$DAMASK_BIN:$PATH
fi
SOLVER=`which DAMASK_spectral || True 2>/dev/null`
PROCESSING=`which postResults || True 2>/dev/null`
if [ "x$DAMASK_NUM_THREADS" = "x" ]; then
DAMASK_NUM_THREADS=1
fi
# according to http://software.intel.com/en-us/forums/topic/501500
# this seems to make sense for the stack size
if [ "`which free 2>/dev/null`" != "free not found" ]; then
freeMem=`free -k | grep -E '(Mem|Speicher):' | awk '{print $4;}'`
# http://superuser.com/questions/220059/what-parameters-has-ulimit
#ulimit -d `expr $freeMem / 2` 2>/dev/null # maximum heap size (kB)
ulimit -s `expr $freeMem / $DAMASK_NUM_THREADS / 2` 2>/dev/null # maximum stack size (kB)
fi
ulimit -v unlimited 2>/dev/null # maximum virtual memory size
ulimit -m unlimited 2>/dev/null # maximum physical memory size
# disable output in case of scp
if [ ! -z "$PS1" ]; then
echo
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo "Using environment with ..."
echo "DAMASK $DAMASK_ROOT"
echo "Spectral Solver $SOLVER"
echo "Post Processing $PROCESSING"
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
if [ "x$PETSC_DIR" != "x" ]; then
echo "PETSc location $PETSC_DIR"
[[ $(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR") == $PETSC_DIR ]] \
|| echo " ~~> "$(python -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" "$PETSC_DIR")
fi
[[ "x$PETSC_ARCH" == "x" ]] \
|| echo "PETSc architecture $PETSC_ARCH"
echo "MSC.Marc/Mentat $MSC_ROOT"
echo
echo -n "heap size "
[[ "$(ulimit -d)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -d) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
echo -n "stack size "
[[ "$(ulimit -s)" == "unlimited" ]] \
&& echo "unlimited" \
|| echo $(python -c \
"import math; \
size=$(( 1024*$(ulimit -s) )); \
print('{:.4g} {}'.format(size / (1 << ((int(math.log(size,2) / 10) if size else 0) * 10)), \
['bytes','KiB','MiB','GiB','TiB','EiB','ZiB'][int(math.log(size,2) / 10) if size else 0]))")
fi
export DAMASK_NUM_THREADS
export PYTHONPATH=$DAMASK_ROOT/lib:$PYTHONPATH
for var in BASE STAT SOLVER PROCESSING FREE DAMASK_BIN MATCH; do
unset "${var}"
done
for var in DAMASK MSC; do
unset "${var}_ROOT"
done
for var in ABAQUS MARC; do
unset "${var}_VERSION"
done