Merge branch 'even-more-HDF5-postprocessing' into MiscImprovements
This commit is contained in:
Martin Diehl
commit
bf7db26680
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@ -45,23 +45,22 @@ class DADF5():
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self.materialpoints = [m.decode() for m in np.unique(f['mapping/cellResults/materialpoint']['Name'])]
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self.constituents = [c.decode() for c in np.unique(f['mapping/cellResults/constituent'] ['Name'])]
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self.con_physics = []
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for c in self.constituents:
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self.con_physics += f['inc00000/constituent/{}'.format(c)].keys()
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self.con_physics += f['/'.join([self.increments[0],'constituent',c])].keys()
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self.con_physics = list(set(self.con_physics)) # make unique
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self.mat_physics = []
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for m in self.materialpoints:
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self.mat_physics += f['inc00000/materialpoint/{}'.format(m)].keys()
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self.mat_physics += f['/'.join([self.increments[0],'materialpoint',m])].keys()
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self.mat_physics = list(set(self.mat_physics)) # make unique
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self.visible= {'increments': self.increments, # ToDo:simplify, activity only positions that translate into (no complex types)
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'constituents': self.constituents,
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'materialpoints': self.materialpoints,
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'constituent': range(self.Nconstituents), # ToDo: stupid naming
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'con_physics': self.con_physics,
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'mat_physics': self.mat_physics}
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self.visible= {'increments': self.increments,
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'constituents': self.constituents,
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'materialpoints': self.materialpoints,
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'constituent': range(self.Nconstituents), # ToDo: stupid naming
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'con_physics': self.con_physics,
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'mat_physics': self.mat_physics}
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self.filename = filename
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@ -163,50 +162,37 @@ class DADF5():
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groups = []
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with h5py.File(self.filename,'r') as f:
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for i in self.iter_visible('increments'): #ToDo: Merge path only once at the end '/'.join(listE)
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for c in self.iter_visible('constituents'):
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for p in self.iter_visible('con_physics'):
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group = '/'.join([i,'constituent',c,p])
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if sets is True:
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groups.append(group)
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else:
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match = [e for e_ in [glob.fnmatch.filter(f[group].keys(),s) for s in sets] for e in e_]
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if len(set(match)) == len(sets) : groups.append(group)
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for m in self.iter_visible('materialpoints'):
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for p in self.iter_visible('mat_physics'):
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group = '/'.join([i,'materialpoint',m,p])
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if sets is True:
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groups.append(group)
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else:
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match = [e for e_ in [glob.fnmatch.filter(f[group].keys(),s) for s in sets] for e in e_]
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if len(set(match)) == len(sets) : groups.append(group)
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for i in self.iter_visible('increments'):
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for o,p in zip(['constituents','materialpoints'],['con_physics','mat_physics']):
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for oo in self.iter_visible(o):
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for pp in self.iter_visible(p):
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group = '/'.join([i,o[:-1],oo,pp]) # o[:-1]: plural/singular issue
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if sets is True:
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groups.append(group)
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else:
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match = [e for e_ in [glob.fnmatch.filter(f[group].keys(),s) for s in sets] for e in e_]
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if len(set(match)) == len(sets) : groups.append(group)
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return groups
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def list_data(self):
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"""Shows information on all active datasets in the file."""
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"""Gives information on all active datasets in the file."""
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message = ''
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with h5py.File(self.filename,'r') as f:
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i = 'inc{:05}'.format(0)
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for c in self.iter_visible('constituents'):
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print('{}'.format(c))
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for p in self.iter_visible('con_physics'):
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print(' {}'.format(p))
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try:
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k = '/'.join([i,'constituent',c,p])
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for d in f[k].keys():
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print(' {} ({})'.format(d,f[k+'/'+d].attrs['Description'].decode()))
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except KeyError:
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pass
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for m in self.iter_visible('materialpoints'):
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print('{}'.format(m))
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for p in self.iter_visible('mat_physics'):
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print(' {}'.format(p))
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try:
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k = '/'.join([i,'materialpoint',m,p])
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for d in f[k].keys():
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print(' {} ({})'.format(d,f[k+'/'+d].attrs['Description'].decode()))
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except KeyError:
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pass
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for i in self.iter_visible('increments'):
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message+='\n{}\n'.format(i)
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for o,p in zip(['constituents','materialpoints'],['con_physics','mat_physics']):
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for oo in self.iter_visible(o):
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message+=' {}\n'.format(oo)
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for pp in self.iter_visible(p):
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message+=' {}\n'.format(pp)
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group = '/'.join([i,o[:-1],oo,pp]) # o[:-1]: plural/singular issue
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for d in f[group].keys():
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try:
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message+=' {} ({})\n'.format(d,f['/'.join([group,d])].attrs['Description'].decode())
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except KeyError:
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pass
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return message
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def get_dataset_location(self,label):
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@ -214,24 +200,15 @@ class DADF5():
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path = []
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with h5py.File(self.filename,'r') as f:
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for i in self.iter_visible('increments'):
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for c in self.iter_visible('constituents'):
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for p in self.iter_visible('con_physics'):
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try:
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k = '/'.join([i,'constituent',c,p,label])
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f[k]
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path.append(k)
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except KeyError as e:
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print('unable to locate constituents dataset: '+ str(e))
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for m in self.iter_visible('materialpoints'):
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for p in self.iter_visible('mat_physics'):
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try:
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k = '/'.join([i,'materialpoint',m,p,label])
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f[k]
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path.append(k)
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except KeyError as e:
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print('unable to locate materialpoints dataset: '+ str(e))
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for o,p in zip(['constituents','materialpoints'],['con_physics','mat_physics']):
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for oo in self.iter_visible(o):
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for pp in self.iter_visible(p):
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k = '/'.join([i,o[:-1],oo,pp,label])
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try:
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f[k]
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path.append(k)
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except KeyError as e:
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print('unable to locate constituents dataset: '+ str(e))
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return path
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