added test for gfortran and gfortran vs intel, renamed intel test to new numbering scheme and changed to new div criterion
introduced "try" statement in lib/damask/test/test.py to avoid crash if a test variant fails
This commit is contained in:
Martin Diehl
parent
e6495c986b
commit
becb863110
|
|
@ -24,6 +24,7 @@ class Test():
|
|||
|
||||
self.clean()
|
||||
for variant in variants:
|
||||
try:
|
||||
self.prepare(variant)
|
||||
self.run(variant)
|
||||
self.postprocess(variant)
|
||||
|
|
@ -31,6 +32,8 @@ class Test():
|
|||
self.update(variant)
|
||||
elif not self.compare(variant):
|
||||
return variant
|
||||
except:
|
||||
return 1
|
||||
return -1
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1,175 @@
|
|||
#!/usr/bin/python
|
||||
|
||||
import os,re,sys,math,numpy,string
|
||||
from optparse import OptionParser, Option
|
||||
|
||||
# -----------------------------
|
||||
class extendableOption(Option):
|
||||
# -----------------------------
|
||||
# used for definition of new option parser action 'extend', which enables to take multiple option arguments
|
||||
# taken from online tutorial http://docs.python.org/library/optparse.html
|
||||
|
||||
ACTIONS = Option.ACTIONS + ("extend",)
|
||||
STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
|
||||
TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
|
||||
ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
|
||||
|
||||
def take_action(self, action, dest, opt, value, values, parser):
|
||||
if action == "extend":
|
||||
lvalue = value.split(",")
|
||||
values.ensure_value(dest, []).extend(lvalue)
|
||||
else:
|
||||
Option.take_action(self, action, dest, opt, value, values, parser)
|
||||
|
||||
|
||||
|
||||
def Mises(what,tensor):
|
||||
|
||||
dev = tensor - numpy.trace(tensor)/3.0*numpy.eye(3)
|
||||
symdev = 0.5*(dev+dev.T)
|
||||
return math.sqrt(numpy.sum(symdev*symdev.T)*
|
||||
{
|
||||
'stress': 3.0/2.0,
|
||||
'strain': 2.0/3.0,
|
||||
}[what])
|
||||
|
||||
|
||||
# --------------------------------------------------------------------
|
||||
# MAIN
|
||||
# --------------------------------------------------------------------
|
||||
|
||||
parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
|
||||
Add vonMises equivalent values for symmetric part of requested strains and/or stresses.
|
||||
|
||||
""" + string.replace('$Id: addMises 966 2011-08-18 08:00:19Z MPIE\p.eisenlohr $','\n','\\n')
|
||||
)
|
||||
|
||||
|
||||
parser.add_option('-m','--memory', dest='memory', action='store_true', \
|
||||
help='load complete file into memory [%default]')
|
||||
parser.add_option('-e','--strain', dest='strain', action='extend', type='string', \
|
||||
help='heading(s) of columns containing strain tensors')
|
||||
parser.add_option('-s','--stress', dest='stress', action='extend', type='string', \
|
||||
help='heading(s) of columns containing stress tensors')
|
||||
|
||||
parser.set_defaults(memory = False)
|
||||
parser.set_defaults(strain = [])
|
||||
parser.set_defaults(stress = [])
|
||||
|
||||
(options,filenames) = parser.parse_args()
|
||||
|
||||
if len(options.strain) + len(options.stress) == 0:
|
||||
parser.error('no data column specified...')
|
||||
|
||||
datainfo = { # list of requested labels per datatype
|
||||
'strain': {'len':9,
|
||||
'label':[]},
|
||||
'stress': {'len':9,
|
||||
'label':[]},
|
||||
}
|
||||
|
||||
|
||||
if options.strain != None: datainfo['strain']['label'] += options.strain
|
||||
if options.stress != None: datainfo['stress']['label'] += options.stress
|
||||
|
||||
|
||||
# ------------------------------------------ setup file handles ---------------------------------------
|
||||
|
||||
files = []
|
||||
if filenames == []:
|
||||
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout})
|
||||
else:
|
||||
for name in filenames:
|
||||
if os.path.exists(name):
|
||||
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')})
|
||||
|
||||
# ------------------------------------------ loop over input files ---------------------------------------
|
||||
|
||||
for file in files:
|
||||
print file['name']
|
||||
|
||||
# get labels by either read the first row, or - if keyword header is present - the last line of the header
|
||||
|
||||
firstline = file['input'].readline()
|
||||
m = re.search('(\d+)\s*head', firstline.lower())
|
||||
if m:
|
||||
headerlines = int(m.group(1))
|
||||
passOn = [file['input'].readline() for i in range(1,headerlines)]
|
||||
headers = file['input'].readline().split()
|
||||
else:
|
||||
headerlines = 1
|
||||
passOn = []
|
||||
headers = firstline.split()
|
||||
|
||||
if options.memory:
|
||||
data = file['input'].readlines()
|
||||
else:
|
||||
data = []
|
||||
|
||||
for i,l in enumerate(headers):
|
||||
if l.startswith('1_'):
|
||||
if re.match('\d+_',l[2:]) or i == len(headers)-1 or not headers[i+1].endswith(l[2:]):
|
||||
headers[i] = l[2:]
|
||||
|
||||
active = {}
|
||||
column = {}
|
||||
head = []
|
||||
|
||||
for datatype,info in datainfo.items():
|
||||
for label in info['label']:
|
||||
key = {True :'1_%s',
|
||||
False:'%s' }[info['len']>1]%label
|
||||
if key not in headers:
|
||||
sys.stderr.write('column %s not found...\n'%key)
|
||||
else:
|
||||
if datatype not in active: active[datatype] = []
|
||||
if datatype not in column: column[datatype] = {}
|
||||
active[datatype].append(label)
|
||||
column[datatype][label] = headers.index(key)
|
||||
head.append('Mises(%s)'%label)
|
||||
|
||||
# ------------------------------------------ assemble header ---------------------------------------
|
||||
|
||||
output = '%i\theader'%(headerlines+1) + '\n' + \
|
||||
''.join(passOn) + \
|
||||
string.replace('$Id: addMises 966 2011-08-18 08:00:19Z MPIE\p.eisenlohr $','\n','\\n')+ '\t' + \
|
||||
' '.join(sys.argv[1:]) + '\n' + \
|
||||
'\t'.join(headers + head) + '\n' # build extended header
|
||||
|
||||
if not options.memory:
|
||||
file['output'].write(output)
|
||||
output = ''
|
||||
|
||||
# ------------------------------------------ read file ---------------------------------------
|
||||
|
||||
for line in {True : data,
|
||||
False : file['input']}[options.memory]:
|
||||
items = line.split()[:len(headers)]
|
||||
if len(items) < len(headers):
|
||||
continue
|
||||
|
||||
output += '\t'.join(items)
|
||||
|
||||
for datatype,labels in active.items():
|
||||
for label in labels:
|
||||
theMises = Mises(datatype,
|
||||
numpy.array(map(float,items[column[datatype][label]:
|
||||
column[datatype][label]+datainfo[datatype]['len']]),'d').reshape(3,3))
|
||||
output += '\t%f'%theMises
|
||||
|
||||
output += '\n'
|
||||
|
||||
if not options.memory:
|
||||
file['output'].write(output)
|
||||
output = ''
|
||||
|
||||
file['input'].close()
|
||||
|
||||
# ------------------------------------------ output result ---------------------------------------
|
||||
|
||||
if options.memory:
|
||||
file['output'].write(output)
|
||||
|
||||
if file['name'] != 'STDIN':
|
||||
file['output'].close
|
||||
os.rename(file['name']+'_tmp',file['name'])
|
||||
Loading…
Reference in New Issue