base substitution on original microstructure
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@ -52,7 +52,7 @@ for name in filenames:
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geom = damask.Geom.from_file(StringIO(''.join(sys.stdin.read())) if name is None else name)
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substituted = geom.get_microstructure()
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for old,new in zip(sub[0::2],sub[1::2]): substituted[substituted==old] = new # substitute microstructure indices
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for old,new in zip(sub[0::2],sub[1::2]): substituted[geom.microstructure==old] = new # substitute microstructure indices
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substituted += options.microstructure # constant shift
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damask.util.croak(geom.update(substituted,origin=geom.get_origin()+options.origin))
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