Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
This commit is contained in:
Martin Diehl
commit
ba6fd70654
2
PRIVATE
2
PRIVATE
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@ -1 +1 @@
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Subproject commit bdbf2da71cd9e0825d17f673ec2fbabc2c8027f8
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Subproject commit 5fc3188c86ea1f4159db87529ac3e3169fb56e5d
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@ -322,7 +322,9 @@ class Test():
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cur1Name = self.fileInCurrent(cur1)
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return self.compare_Array(cur0Name,cur1Name)
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def compare_Table(self,headings0,file0,headings1,file1,normHeadings='',normType=None,
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def compare_Table(self,headings0,file0,
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headings1,file1,
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normHeadings='',normType=None,
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absoluteTolerance=False,perLine=False,skipLines=[]):
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import numpy as np
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@ -368,11 +370,11 @@ class Test():
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key1 = ('1_' if length[i]>1 else '') + headings1[i]['label']
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normKey = ('1_' if normLength[i]>1 else '') + normHeadings[i]['label']
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if key0 not in table0.labels(raw = True):
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raise Exception('column {} not found in 1. table...\n'.format(key0))
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raise Exception('column "{}" not found in first table...\n'.format(key0))
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elif key1 not in table1.labels(raw = True):
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raise Exception('column {} not found in 2. table...\n'.format(key1))
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raise Exception('column "{}" not found in second table...\n'.format(key1))
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elif normKey not in table0.labels(raw = True):
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raise Exception('column {} not found in 1. table...\n'.format(normKey))
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raise Exception('column "{}" not found in first table...\n'.format(normKey))
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else:
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column[0][i] = table0.label_index(key0)
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column[1][i] = table1.label_index(key1)
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@ -400,9 +402,9 @@ class Test():
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norm[i] = [1.0 for j in range(line0-len(skipLines))]
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absTol[i] = True
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if perLine:
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logging.warning('At least one norm of {} in 1. table is 0.0, using absolute tolerance'.format(headings0[i]['label']))
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logging.warning('At least one norm of "{}" in first table is 0.0, using absolute tolerance'.format(headings0[i]['label']))
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else:
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logging.warning('Maximum norm of {} in 1. table is 0.0, using absolute tolerance'.format(headings0[i]['label']))
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logging.warning('Maximum norm of "{}" in first table is 0.0, using absolute tolerance'.format(headings0[i]['label']))
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line1 = 0
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while table1.data_read(): # read next data line of ASCII table
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@ -414,7 +416,7 @@ class Test():
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norm[i][line1-len(skipLines)])
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line1 +=1
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if (line0 != line1): raise Exception('found {} lines in 1. table but {} in 2. table'.format(line0,line1))
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if (line0 != line1): raise Exception('found {} lines in first table but {} in second table'.format(line0,line1))
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logging.info(' ********')
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for i in range(dataLength):
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@ -561,25 +563,28 @@ class Test():
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return allclose
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def compare_TableRefCur(self,headingsRef,ref,headingsCur='',cur='',normHeadings='',normType=None,\
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def compare_TableRefCur(self,headingsRef,ref,headingsCur='',cur='',
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normHeadings='',normType=None,
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absoluteTolerance=False,perLine=False,skipLines=[]):
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if cur == '': cur = ref
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if headingsCur == '': headingsCur = headingsRef
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refName = self.fileInReference(ref)
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curName = self.fileInCurrent(cur)
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return self.compare_Table(headingsRef,refName,headingsCur,curName,normHeadings,normType,
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return self.compare_Table(headingsRef,
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self.fileInReference(ref),
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headingsRef if headingsCur == '' else headingsCur,
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self.fileInCurrent(ref if cur == '' else cur),
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normHeadings,normType,
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absoluteTolerance,perLine,skipLines)
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def compare_TableCurCur(self,headingsCur0,Cur0,Cur1,headingsCur1='',normHeadings='',normType=None,\
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def compare_TableCurCur(self,headingsCur0,Cur0,Cur1,
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headingsCur1='',
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normHeadings='',normType=None,
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absoluteTolerance=False,perLine=False,skipLines=[]):
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if headingsCur1 == '': headingsCur1 = headingsCur0
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cur0Name = self.fileInCurrent(Cur0)
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cur1Name = self.fileInCurrent(Cur1)
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return self.compare_Table(headingsCur0,cur0Name,headingsCur1,cur1Name,normHeadings,normType,
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absoluteTolerance,perLine,skipLines)
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return self.compare_Table(headingsCur0,
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self.fileInCurrent(Cur0),
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headingsCur0 if headingsCur1 == '' else headingsCur1,
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self.fileInCurrent(Cur1),
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normHeadings,normType,absoluteTolerance,perLine,skipLines)
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def report_Success(self,culprit):
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@ -1268,7 +1268,7 @@ integer(pInt) function IO_countNumericalDataLines(fileUnit)
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line = IO_read(fileUnit)
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chunkPos = IO_stringPos(line)
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tmp = IO_lc(IO_stringValue(line,chunkPos,1_pInt))
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if (scan(tmp,"abcdefghijklmnopqrstuvwxyz")/=0) then ! found keyword
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if (verify(trim(tmp) ,"0123456789")/=0) then ! found keyword
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line = IO_read(fileUnit, .true.) ! reset IO_read
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exit
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else
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@ -1839,12 +1839,12 @@ integer(pInt) function IO_verifyIntValue (string,validChars,myName)
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invalidWhere = verify(string,validChars)
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if (invalidWhere == 0_pInt) then
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read(UNIT=string,iostat=readStatus,FMT=*) IO_verifyIntValue ! no offending chars found
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if (readStatus /= 0_pInt) & ! error during string to float conversion
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if (readStatus /= 0_pInt) & ! error during string to integer conversion
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call IO_warning(203_pInt,ext_msg=myName//'"'//string//'"')
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else
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call IO_warning(202_pInt,ext_msg=myName//'"'//string//'"') ! complain about offending characters
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read(UNIT=string(1_pInt:invalidWhere-1_pInt),iostat=readStatus,FMT=*) IO_verifyIntValue ! interpret remaining string
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if (readStatus /= 0_pInt) & ! error during string to float conversion
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if (readStatus /= 0_pInt) & ! error during string to integer conversion
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call IO_warning(203_pInt,ext_msg=myName//'"'//string(1_pInt:invalidWhere-1_pInt)//'"')
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endif
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40
src/mesh.f90
40
src/mesh.f90
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@ -1643,10 +1643,11 @@ subroutine mesh_marc_get_matNumber(fileUnit)
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chunkPos = IO_stringPos(line)
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data_blocks = IO_intValue(line,chunkPos,1_pInt)
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endif
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allocate(Marc_matNumber(data_blocks))
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do i=1_pInt,data_blocks ! read all data blocks
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read (fileUnit,610,END=620) line
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chunkPos = IO_stringPos(line)
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Marc_matNumber = (/Marc_matNumber, IO_intValue(line,chunkPos,1_pInt)/)
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Marc_matNumber(i) = IO_intValue(line,chunkPos,1_pInt)
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do j=1_pint,2_pInt + hypoelasticTableStyle ! read 2 or 3 remaining lines of data block
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read (fileUnit,610,END=620) line
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enddo
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@ -1809,12 +1810,11 @@ subroutine mesh_marc_count_cpElements(fileUnit)
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do i=1_pInt,3_pInt+hypoelasticTableStyle ! Skip 3 or 4 lines
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read (fileUnit,610,END=620) line
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enddo
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mesh_NcpElems = mesh_NcpElems + IO_countContinuousIntValues(fileUnit) ! why not simply mesh_NcpElems = IO_countContinuousIntValues(fileUnit)? keyword hypoelastic might appear several times so the next line probably should not be there
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mesh_NcpElems = mesh_NcpElems + IO_countContinuousIntValues(fileUnit) ! why not simply mesh_NcpElems = IO_countContinuousIntValues(fileUnit)? not fully correct as hypoelastic can have multiple data fields, needs update
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exit
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endif
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enddo
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else ! Marc2017 and later
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call IO_error(error_ID=701_pInt)
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do
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read (fileUnit,610,END=620) line
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chunkPos = IO_stringPos(line)
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@ -1839,6 +1839,7 @@ subroutine mesh_marc_map_elements(fileUnit)
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use math, only: math_qsort
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use IO, only: IO_lc, &
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IO_intValue, &
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IO_stringValue, &
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IO_stringPos, &
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IO_continuousIntValues
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@ -1847,7 +1848,8 @@ subroutine mesh_marc_map_elements(fileUnit)
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integer(pInt), intent(in) :: fileUnit
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integer(pInt), allocatable, dimension(:) :: chunkPos
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character(len=300) :: line
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character(len=300) :: line, &
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tmp
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integer(pInt), dimension (1_pInt+mesh_NcpElems) :: contInts
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integer(pInt) :: i,cpElem = 0_pInt
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@ -1856,25 +1858,47 @@ subroutine mesh_marc_map_elements(fileUnit)
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610 FORMAT(A300)
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contInts = 0_pInt
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rewind(fileUnit)
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do
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read (fileUnit,610,END=660) line
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chunkPos = IO_stringPos(line)
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if (MarcVersion < 13) then ! Marc 2016 or earlier
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if( IO_lc(IO_stringValue(line,chunkPos,1_pInt)) == 'hypoelastic' ) then
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do i=1_pInt,3_pInt+hypoelasticTableStyle ! skip three (or four if new table style!) lines
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read (fileUnit,610,END=660) line
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enddo
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contInts = IO_continuousIntValues(fileUnit,mesh_NcpElems,mesh_nameElemSet,&
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mesh_mapElemSet,mesh_NelemSets)
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do i = 1_pInt,contInts(1)
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exit
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endif
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else ! Marc2017 and later
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if ( IO_lc(IO_stringValue(line,chunkPos,1_pInt)) == 'connectivity') then
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read (fileUnit,610,END=660) line
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chunkPos = IO_stringPos(line)
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if(any(Marc_matNumber==IO_intValue(line,chunkPos,6_pInt))) then
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do
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read (fileUnit,610,END=660) line
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chunkPos = IO_stringPos(line)
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tmp = IO_lc(IO_stringValue(line,chunkPos,1_pInt))
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if (verify(trim(tmp),"0123456789")/=0) then ! found keyword
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exit
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else
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contInts(1) = contInts(1) + 1_pInt
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read (tmp,*) contInts(contInts(1)+1)
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endif
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enddo
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endif
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endif
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endif
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enddo
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660 do i = 1_pInt,contInts(1)
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cpElem = cpElem+1_pInt
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mesh_mapFEtoCPelem(1,cpElem) = contInts(1_pInt+i)
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mesh_mapFEtoCPelem(2,cpElem) = cpElem
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enddo
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endif
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enddo
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660 call math_qsort(mesh_mapFEtoCPelem,1_pInt,int(size(mesh_mapFEtoCPelem,2_pInt),pInt)) ! should be mesh_NcpElems
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call math_qsort(mesh_mapFEtoCPelem,1_pInt,int(size(mesh_mapFEtoCPelem,2_pInt),pInt)) ! should be mesh_NcpElems
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end subroutine mesh_marc_map_elements
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