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change string type 

normal fortran strings are fixed-length, spacepad. h5py (at least v3.x)
creates variable-length, nullterm
This commit is contained in:
Martin Diehl 2020-11-05 15:33:43 +01:00
parent b8503e84b7
commit b8c97c5b7e
1 changed files with 10 additions and 8 deletions
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14
src/HDF5_utilities.f90
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@ -296,6 +296,8 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
logical :: attrExists logical :: attrExists
integer :: hdferr integer :: hdferr
character(len=:), allocatable :: p character(len=:), allocatable :: p
character(len=:,kind=C_CHAR), allocatable,target :: attrValue_
type(c_ptr),target,dimension(1) :: ptr
if (present(path)) then if (present(path)) then
p = trim(path) p = trim(path)
@ -303,12 +305,12 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
p = '.' p = '.'
endif endif
attrValue_ = attrValue//C_NULL_CHAR
ptr(1) = c_loc(attrValue_)
call h5screate_f(H5S_SCALAR_F,space_id,hdferr) call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5screate_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5screate_f')
call h5tcopy_f(H5T_NATIVE_CHARACTER, type_id, hdferr) call h5tcopy_f(H5T_STRING, type_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tcopy_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tcopy_f')
call h5tset_size_f(type_id, int(len_trim(attrValue),HSIZE_T), hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tset_size_f')
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aexists_by_name_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aexists_by_name_f')
if (attrExists) then if (attrExists) then
@ -317,7 +319,7 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
endif endif
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr) call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5acreate_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5acreate_f')
call h5awrite_f(attr_id, type_id, trim(attrValue), int([1],HSIZE_T), hdferr) call h5awrite_f(attr_id, type_id, ptr, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5awrite_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5awrite_f')
call h5aclose_f(attr_id,hdferr) call h5aclose_f(attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aclose_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aclose_f')
@ -436,7 +438,7 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
array_size = size(attrValue,kind=HSIZE_T) array_size = size(attrValue,kind=HSIZE_T)
call h5screate_simple_f(1, array_size, space_id, hdferr, array_size) call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f')
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f')
if (attrExists) then if (attrExists) then
@ -480,7 +482,7 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
array_size = size(attrValue,kind=HSIZE_T) array_size = size(attrValue,kind=HSIZE_T)
call h5screate_simple_f(1, array_size, space_id, hdferr, array_size) call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f')
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f') if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f')
if (attrExists) then if (attrExists) then