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DAMASK_EICMD
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last changes on preprocessing tools, only documentation needs to be done

This commit is contained in:
Martin Diehl 2013-05-17 16:44:03 +00:00
parent 0504fb3b21
commit b3a90a8a3b
3 changed files with 12 additions and 11 deletions
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16
processing/pre/geom_fromAng.py
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@ -40,7 +40,7 @@ parser.add_option('-t','--threshold', dest='threshold', type='float', \
parser.add_option('--homogenization', dest='homogenization', type='int', \ parser.add_option('--homogenization', dest='homogenization', type='int', \
help='homogenization index to be used [%default]') help='homogenization index to be used [%default]')
parser.add_option('--phase', dest='phase', type='int', nargs = 2, \ parser.add_option('--phase', dest='phase', type='int', nargs = 2, \
help='phase indices to be used %default') help='two phase indices to be used %default')
parser.add_option('--crystallite', dest='crystallite', type='int', \ parser.add_option('--crystallite', dest='crystallite', type='int', \
help='crystallite index to be used [%default]') help='crystallite index to be used [%default]')
parser.add_option('-c', '--configuration', dest='config', action='store_true', \ parser.add_option('-c', '--configuration', dest='config', action='store_true', \
@ -78,7 +78,7 @@ for file in files:
if file['name'] != 'STDIN': file['croak'].write(file['name']+'\n') if file['name'] != 'STDIN': file['croak'].write(file['name']+'\n')
info = { info = {
'grid': numpy.array([0,0,1]), 'grid': numpy.ones (3,'i'),
'size': numpy.zeros(3,'d'), 'size': numpy.zeros(3,'d'),
'origin': numpy.zeros(3,'d'), 'origin': numpy.zeros(3,'d'),
'microstructures': 0, 'microstructures': 0,
@ -98,10 +98,10 @@ for file in files:
file['croak'].write('The file has HexGrid format. Please first convert to SquareGrid...\n'); break file['croak'].write('The file has HexGrid format. Please first convert to SquareGrid...\n'); break
if words[1] == 'XSTEP:': step[0] = float(words[2]) if words[1] == 'XSTEP:': step[0] = float(words[2])
if words[1] == 'YSTEP:': step[1] = float(words[2]) if words[1] == 'YSTEP:': step[1] = float(words[2])
if words[1] == 'NCOLS_ODD:': if words[1] == 'NCOLS_ODD:':
info['grid'][0] = int(words[2]); formatwidth = 1+int(math.log10(info['grid'][0]*info['grid'][1])) info['grid'][0] = int(words[2]); formatwidth = 1+int(math.log10(info['grid'][0]*info['grid'][1]))
if words[1] == 'NROWS:': if words[1] == 'NROWS:':
info['grid'][1] = int(words[2]); formatwidth = 1+int(math.log10(info['grid'][0]*info['grid'][1])) info['grid'][1] = int(words[2]); formatwidth = 1+int(math.log10(info['grid'][0]*info['grid'][1]))
else: # finished with comments block else: # finished with comments block
if options.config: # write configuration (line by line) if options.config: # write configuration (line by line)
point += 1 point += 1
@ -127,10 +127,10 @@ for file in files:
'microstructures: %i\n\n'%info['microstructures']) 'microstructures: %i\n\n'%info['microstructures'])
if numpy.any(info['grid'] < 1): if numpy.any(info['grid'] < 1):
file['croak'].write('no valid grid info found.\n') file['croak'].write('invalid grid a b c.\n')
sys.exit() sys.exit()
if numpy.any(info['size'] <= 0.0): if numpy.any(info['size'] <= 0.0):
file['croak'].write('no valid size info found.\n') file['croak'].write('invalid size x y z.\n')
sys.exit() sys.exit()
#--- write data ----------------------------------------------------------------------------------- #--- write data -----------------------------------------------------------------------------------

6
processing/pre/geom_fromVPSC.py
View File

@ -34,7 +34,7 @@ Generate geometry description and material configuration from input files used b
parser.add_option('--column', dest='column', type='int', \ parser.add_option('--column', dest='column', type='int', \
help='data column to discriminate phase 1 from 2 [%default]') help='data column to discriminate phase 1 from 2 [%default]')
parser.add_option('-t','--treshold', dest='threshold', type='float', \ parser.add_option('-t','--treshold', dest='threshold', type='float', \
help='threshold value to discriminate phase 1 from 2 [%default]') help='threshold value to discriminate phase 1 from 2 [%default]')
parser.add_option('--homogenization', dest='homogenization', type='int', \ parser.add_option('--homogenization', dest='homogenization', type='int', \
help='homogenization index to be used [%default]') help='homogenization index to be used [%default]')
@ -117,10 +117,10 @@ for file in files:
'microstructures: %i\n\n'%info['microstructures']) 'microstructures: %i\n\n'%info['microstructures'])
if numpy.any(info['grid'] < 1): if numpy.any(info['grid'] < 1):
file['croak'].write('no valid grid info found.\n') file['croak'].write('invalid grid a b c.\n')
sys.exit() sys.exit()
if numpy.any(info['size'] <= 0.0): if numpy.any(info['size'] <= 0.0):
file['croak'].write('no valid size info found.\n') file['croak'].write('invalid size x y z.\n')
sys.exit() sys.exit()
#--- write data ----------------------------------------------------------------------------------- #--- write data -----------------------------------------------------------------------------------

1
processing/pre/geom_fromVoronoiTessellation.py
View File

@ -206,6 +206,7 @@ for file in files:
new_header.append("homogenization\t%i\n"%info['homogenization']) new_header.append("homogenization\t%i\n"%info['homogenization'])
file['output'].write('%i\theader\n'%(len(new_header)) + ''.join(new_header)) file['output'].write('%i\theader\n'%(len(new_header)) + ''.join(new_header))
# --- write microstructure information ------------------------------------------------------------
for n in xrange(info['grid'][1:3].prod()): # loop over 2nd and 3rd size for n in xrange(info['grid'][1:3].prod()): # loop over 2nd and 3rd size
file['output'].write({ True: ' ', file['output'].write({ True: ' ',
False:'\n'}[options.twoD].\ False:'\n'}[options.twoD].\