not needed anymore as Marc always compiles with OpenMP
adopted installation script and documentation accordingly
This commit is contained in:
Franz Roters
parent
9a90eae3bc
commit
b24ebb8a5b
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@ -1,52 +0,0 @@
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#!/bin/ksh
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# 1st arg: $DIR
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# 2nd arg: $DIRJOB
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# 3rd arg: $user
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# 4th arg: $program
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DIR=$1
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user=$3
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program=$4
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usernoext=$user
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
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# add BLAS options for linking
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BLAS="%BLAS%"
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. $DIR/tools/include
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DIRJOB=$2
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cd $DIRJOB
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echo "Compiling and linking user subroutine $user on host `hostname`"
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echo "program: $program"
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$DFORTRAN $user || \
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{
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echo "$0: compile failed for $user"
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exit 1
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}
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/bin/rm $program 2>/dev/null
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userobj=$usernoext.o
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$LOAD ${program} $DIR/lib/main.o\
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$DIR/lib/blkdta.o $DIR/lib/comm?.o \
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${userobj-} \
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$DIR/lib/srclib.a \
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$MNFLIBS \
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$MDUSER \
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../lib/mdsrc.a \
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../lib/mcvfit.a \
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$STUBS \
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${SOLVERLIBS} \
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$TKLIBS \
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$MRCLIBS \
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$METISLIBS \
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$BLAS \
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$SYSLIBS || \
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{
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echo "$0: link failed for $usernoext.o on host `hostname`"
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exit 1
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}
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/bin/rm $userobj
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/bin/rm $DIRJOB/*.mod
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@ -1,52 +0,0 @@
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#!/bin/ksh
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# 1st arg: $DIR
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# 2nd arg: $DIRJOB
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# 3rd arg: $user
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# 4th arg: $program
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DIR=$1
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user=$3
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program=$4
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usernoext=$user
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
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# add BLAS options for linking
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BLAS="%BLAS%"
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. $DIR/tools/include
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DIRJOB=$2
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cd $DIRJOB
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echo "Compiling and linking user subroutine $user on host `hostname`"
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echo "program: $program"
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$DFORTHIGH $user || \
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{
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echo "$0: compile failed for $user"
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exit 1
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}
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/bin/rm $program 2>/dev/null
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userobj=$usernoext.o
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$LOAD ${program} $DIR/lib/main.o\
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$DIR/lib/blkdta.o $DIR/lib/comm?.o \
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${userobj-} \
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$DIR/lib/srclib.a \
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$MNFLIBS \
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$MDUSER \
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../lib/mdsrc.a \
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../lib/mcvfit.a \
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$STUBS \
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${SOLVERLIBS} \
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$TKLIBS \
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$MRCLIBS \
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$METISLIBS \
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$BLAS \
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$SYSLIBS || \
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{
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echo "$0: link failed for $usernoext.o on host `hostname`"
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exit 1
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}
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/bin/rm $userobj
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/bin/rm $DIRJOB/*.mod
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@ -1,52 +0,0 @@
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#!/bin/ksh
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# 1st arg: $DIR
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# 2nd arg: $DIRJOB
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# 3rd arg: $user
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# 4th arg: $program
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DIR=$1
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user=$3
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program=$4
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usernoext=$user
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
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usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
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# add BLAS options for linking
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BLAS="%BLAS%"
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. $DIR/tools/include
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DIRJOB=$2
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cd $DIRJOB
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echo "Compiling and linking user subroutine $user on host `hostname`"
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echo "program: $program"
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$DFORTLOW $user || \
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{
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echo "$0: compile failed for $user"
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exit 1
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}
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/bin/rm $program 2>/dev/null
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userobj=$usernoext.o
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$LOAD ${program} $DIR/lib/main.o\
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$DIR/lib/blkdta.o $DIR/lib/comm?.o \
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${userobj-} \
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$DIR/lib/srclib.a \
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$MNFLIBS \
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$MDUSER \
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../lib/mdsrc.a \
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../lib/mcvfit.a \
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$STUBS \
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${SOLVERLIBS} \
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$TKLIBS \
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$MRCLIBS \
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$METISLIBS \
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$BLAS \
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$SYSLIBS || \
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{
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echo "$0: link failed for $usernoext.o on host `hostname`"
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exit 1
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}
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/bin/rm $userobj
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/bin/rm $DIRJOB/*.mod
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File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
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@ -1,8 +0,0 @@
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#!/bin/sh
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if [ "$1" = "" ]; then
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echo "usage: $0 job_name"
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exit 1
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fi
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echo STOP > $1.cnt
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@ -1,8 +0,0 @@
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#!/bin/sh
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if [ "$1" = "" ]; then
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echo "usage: $0 job_name"
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exit 1
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fi
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echo STOP > $1.cnt
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@ -1,8 +0,0 @@
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#!/bin/sh
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if [ "$1" = "" ]; then
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echo "usage: $0 job_name"
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exit 1
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fi
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echo STOP > $1.cnt
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@ -1,187 +0,0 @@
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#!/bin/sh
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#
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# The exit status of this script is read by Mentat.
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# Normal exit status is 0.
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#
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DIR=%INSTALLDIR%/marc%VERSION%
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if test $MARCDIR1
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then
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DIR=$MARCDIR1
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fi
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if test -z "$DIR"; then
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REALCOM="`ls -l $0 |awk '{ print $NF; }'`"
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DIRSCRIPT=`dirname $REALCOM`
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case $DIRSCRIPT in
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\/*)
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;;
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*)
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DIRSCRIPT=`pwd`/$DIRSCRIPT
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;;
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esac
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. $DIRSCRIPT/getarch
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DIR="$MENTAT_MARCDIR"
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fi
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SRCEXT=.f
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SRCEXTC=.F
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RSTEXT=.t08
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PSTEXT=.t19
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PSTEXTB=.t16
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VWFCEXT=.vfs
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slv=$1
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version=$2
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ndom_fea_solver=$3
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ndom_preprocessor=$4
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hostfile=$5
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compat=$6
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job=$7
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srcfile=$8
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srcmeth=$9
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shift 9 # cannot use $10, $11, ...
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restart=$1
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postfile=$2
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viewfactorsfile=$3
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autorst=$4
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copy_datfile="-ci $5"
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copy_postfile="-cr $6"
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scr_dir=$7
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dcoup=$8
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assem_recov_nthread=$9
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shift 9 # cannot use $10, $11, ...
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nthread=$1
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nsolver=$2
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mode=$3
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gpu=$4
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if [ "$slv" != "" -a "$slv" != "marc" ]; then
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slv="-iam sfm"
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else
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slv=""
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fi
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if [ "$ndom_fea_solver" != "" -a "$ndom_fea_solver" != "1" ]; then
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nprocds="-nprocds $ndom_fea_solver"
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else
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nprocd=""
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if [ "$ndom_preprocessor" != "" -a "$ndom_preprocessor" != "1" ]; then
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nprocd="-nprocd $ndom_preprocessor"
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else
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nprocd=""
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fi
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fi
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if [ "$srcfile" != "" -a "$srcfile" != "-" ]; then
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srcfile=`echo $srcfile | sed "s/$SRCEXT$//" | sed "s/$SRCEXTC$//"`
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case "$srcmeth" in
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-)
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srcfile="-u $srcfile"
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;;
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compsave)
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srcfile="-u $srcfile -save y"
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;;
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runsaved)
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srcfile=${srcfile%.*}".marc"
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srcfile="-prog $srcfile"
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;;
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esac
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else
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srcfile=""
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fi
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if [ "$restart" != "" -a "$restart" != "-" ]; then
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restart=`echo $restart | sed "s/$RSTEXT$//"`
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restart="-r $restart"
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else
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restart=""
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fi
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if [ "$postfile" != "" -a "$postfile" != "-" ]; then
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postfile=`echo $postfile | sed "s/$PSTEXT$//"`
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postfile=`echo $postfile | sed "s/$PSTEXTB$//"`
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postfile="-pid $postfile"
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else
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postfile=""
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fi
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if [ "$viewfactorsfile" != "" -a "$viewfactorsfile" != "-" ]; then
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viewfactorsfile=`echo $viewfactorsfile | sed "s/$VWFCEXT$//"`
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viewfactorsfile="-vf $viewfactorsfile"
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else
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viewfactorsfile=""
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fi
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if [ "$hostfile" != "" -a "$hostfile" != "-" ]; then
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hostfile="-ho $hostfile"
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else
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hostfile=""
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fi
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if [ "$compat" != "" -a "$compat" != "-" ]; then
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compat="-co $compat"
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else
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compat=""
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fi
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if [ "$scr_dir" != "" -a "$scr_dir" != "-" ]; then
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scr_dir="-sd $scr_dir"
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else
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scr_dir=""
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fi
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if [ "$dcoup" != "" -a "$dcoup" != "0" ]; then
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dcoup="-dcoup $dcoup"
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else
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dcoup=""
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fi
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if [ "$assem_recov_nthread" != "" -a "$assem_recov_nthread" != "1" ]; then
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assem_recov_nthread="-nthread_elem $assem_recov_nthread"
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else
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assem_recov_nthread=""
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fi
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||||
if [ "$nthread" != "" -a "$nthread" != "0" -a "$nthread" != "1" ]; then
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nthread="-nthread $nthread"
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||||
else
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nthread=""
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||||
fi
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if [ "$nsolver" != "" -a "$nsolver" != "0" ]; then
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nsolver="-nsolver $nsolver"
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||||
else
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nsolver=""
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||||
fi
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||||
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||||
case "$mode" in
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4) mode="-mo i4" ;;
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8) mode="-mo i8" ;;
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||||
*) mode= ;;
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||||
esac
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||||
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||||
if [ "$gpu" != "" -a "$gpu" != "-" ]; then
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gpu="-gpu $gpu"
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||||
else
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gpu=""
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||||
fi
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||||
|
||||
rm -f $job.cnt
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||||
rm -f $job.sts
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rm -f $job.out
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||||
rm -f $job.log
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||||
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||||
# To prevent a mismatch with the python version used by the solver
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||||
# do *not* prepend $MENTAT_INSTALL_DIR/python/bin to environment variable PATH
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||||
# unset environment variables PYTHONHOME and PYTHONPATH
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unset PYTHONHOME
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||||
unset PYTHONPATH
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||||
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||||
"${DIR}/tools/run_damask_h" $slv -j $job -v n -b y $nprocds $nprocd -autorst $autorst \
|
||||
$srcfile $restart $postfile $viewfactorsfile $hostfile \
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$compat $copy_datfile $copy_postfile $scr_dir $dcoup \
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||||
$assem_recov_nthread $nthread $nsolver $mode $gpu > /dev/null 2>&1
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sleep 1
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exit 0
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|
|
@ -1,187 +0,0 @@
|
|||
#!/bin/sh
|
||||
#
|
||||
# The exit status of this script is read by Mentat.
|
||||
# Normal exit status is 0.
|
||||
#
|
||||
|
||||
DIR=%INSTALLDIR%/marc%VERSION%
|
||||
if test $MARCDIR1
|
||||
then
|
||||
DIR=$MARCDIR1
|
||||
fi
|
||||
|
||||
if test -z "$DIR"; then
|
||||
REALCOM="`ls -l $0 |awk '{ print $NF; }'`"
|
||||
DIRSCRIPT=`dirname $REALCOM`
|
||||
case $DIRSCRIPT in
|
||||
\/*)
|
||||
;;
|
||||
*)
|
||||
DIRSCRIPT=`pwd`/$DIRSCRIPT
|
||||
;;
|
||||
esac
|
||||
. $DIRSCRIPT/getarch
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||||
|
||||
DIR="$MENTAT_MARCDIR"
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||||
fi
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||||
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||||
SRCEXT=.f
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||||
SRCEXTC=.F
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||||
RSTEXT=.t08
|
||||
PSTEXT=.t19
|
||||
PSTEXTB=.t16
|
||||
VWFCEXT=.vfs
|
||||
|
||||
slv=$1
|
||||
version=$2
|
||||
ndom_fea_solver=$3
|
||||
ndom_preprocessor=$4
|
||||
hostfile=$5
|
||||
compat=$6
|
||||
job=$7
|
||||
srcfile=$8
|
||||
srcmeth=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
restart=$1
|
||||
postfile=$2
|
||||
viewfactorsfile=$3
|
||||
autorst=$4
|
||||
copy_datfile="-ci $5"
|
||||
copy_postfile="-cr $6"
|
||||
scr_dir=$7
|
||||
dcoup=$8
|
||||
assem_recov_nthread=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
nthread=$1
|
||||
nsolver=$2
|
||||
mode=$3
|
||||
gpu=$4
|
||||
|
||||
if [ "$slv" != "" -a "$slv" != "marc" ]; then
|
||||
slv="-iam sfm"
|
||||
else
|
||||
slv=""
|
||||
fi
|
||||
|
||||
if [ "$ndom_fea_solver" != "" -a "$ndom_fea_solver" != "1" ]; then
|
||||
nprocds="-nprocds $ndom_fea_solver"
|
||||
else
|
||||
nprocd=""
|
||||
if [ "$ndom_preprocessor" != "" -a "$ndom_preprocessor" != "1" ]; then
|
||||
nprocd="-nprocd $ndom_preprocessor"
|
||||
else
|
||||
nprocd=""
|
||||
fi
|
||||
fi
|
||||
|
||||
if [ "$srcfile" != "" -a "$srcfile" != "-" ]; then
|
||||
srcfile=`echo $srcfile | sed "s/$SRCEXT$//" | sed "s/$SRCEXTC$//"`
|
||||
case "$srcmeth" in
|
||||
-)
|
||||
srcfile="-u $srcfile"
|
||||
;;
|
||||
compsave)
|
||||
srcfile="-u $srcfile -save y"
|
||||
;;
|
||||
runsaved)
|
||||
srcfile=${srcfile%.*}".marc"
|
||||
srcfile="-prog $srcfile"
|
||||
;;
|
||||
esac
|
||||
else
|
||||
srcfile=""
|
||||
fi
|
||||
|
||||
if [ "$restart" != "" -a "$restart" != "-" ]; then
|
||||
restart=`echo $restart | sed "s/$RSTEXT$//"`
|
||||
restart="-r $restart"
|
||||
else
|
||||
restart=""
|
||||
fi
|
||||
|
||||
if [ "$postfile" != "" -a "$postfile" != "-" ]; then
|
||||
postfile=`echo $postfile | sed "s/$PSTEXT$//"`
|
||||
postfile=`echo $postfile | sed "s/$PSTEXTB$//"`
|
||||
postfile="-pid $postfile"
|
||||
else
|
||||
postfile=""
|
||||
fi
|
||||
|
||||
if [ "$viewfactorsfile" != "" -a "$viewfactorsfile" != "-" ]; then
|
||||
viewfactorsfile=`echo $viewfactorsfile | sed "s/$VWFCEXT$//"`
|
||||
viewfactorsfile="-vf $viewfactorsfile"
|
||||
else
|
||||
viewfactorsfile=""
|
||||
fi
|
||||
|
||||
if [ "$hostfile" != "" -a "$hostfile" != "-" ]; then
|
||||
hostfile="-ho $hostfile"
|
||||
else
|
||||
hostfile=""
|
||||
fi
|
||||
|
||||
if [ "$compat" != "" -a "$compat" != "-" ]; then
|
||||
compat="-co $compat"
|
||||
else
|
||||
compat=""
|
||||
fi
|
||||
|
||||
if [ "$scr_dir" != "" -a "$scr_dir" != "-" ]; then
|
||||
scr_dir="-sd $scr_dir"
|
||||
else
|
||||
scr_dir=""
|
||||
fi
|
||||
|
||||
if [ "$dcoup" != "" -a "$dcoup" != "0" ]; then
|
||||
dcoup="-dcoup $dcoup"
|
||||
else
|
||||
dcoup=""
|
||||
fi
|
||||
|
||||
if [ "$assem_recov_nthread" != "" -a "$assem_recov_nthread" != "1" ]; then
|
||||
assem_recov_nthread="-nthread_elem $assem_recov_nthread"
|
||||
else
|
||||
assem_recov_nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nthread" != "" -a "$nthread" != "0" -a "$nthread" != "1" ]; then
|
||||
nthread="-nthread $nthread"
|
||||
else
|
||||
nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nsolver" != "" -a "$nsolver" != "0" ]; then
|
||||
nsolver="-nsolver $nsolver"
|
||||
else
|
||||
nsolver=""
|
||||
fi
|
||||
|
||||
case "$mode" in
|
||||
4) mode="-mo i4" ;;
|
||||
8) mode="-mo i8" ;;
|
||||
*) mode= ;;
|
||||
esac
|
||||
|
||||
if [ "$gpu" != "" -a "$gpu" != "-" ]; then
|
||||
gpu="-gpu $gpu"
|
||||
else
|
||||
gpu=""
|
||||
fi
|
||||
|
||||
rm -f $job.cnt
|
||||
rm -f $job.sts
|
||||
rm -f $job.out
|
||||
rm -f $job.log
|
||||
|
||||
# To prevent a mismatch with the python version used by the solver
|
||||
# do *not* prepend $MENTAT_INSTALL_DIR/python/bin to environment variable PATH
|
||||
# unset environment variables PYTHONHOME and PYTHONPATH
|
||||
unset PYTHONHOME
|
||||
unset PYTHONPATH
|
||||
|
||||
"${DIR}/tools/run_damask" $slv -j $job -v n -b y $nprocds $nprocd -autorst $autorst \
|
||||
$srcfile $restart $postfile $viewfactorsfile $hostfile \
|
||||
$compat $copy_datfile $copy_postfile $scr_dir $dcoup \
|
||||
$assem_recov_nthread $nthread $nsolver $mode $gpu > /dev/null 2>&1
|
||||
sleep 1
|
||||
exit 0
|
||||
|
|
@ -1,187 +0,0 @@
|
|||
#!/bin/sh
|
||||
#
|
||||
# The exit status of this script is read by Mentat.
|
||||
# Normal exit status is 0.
|
||||
#
|
||||
|
||||
DIR=%INSTALLDIR%/marc%VERSION%
|
||||
if test $MARCDIR1
|
||||
then
|
||||
DIR=$MARCDIR1
|
||||
fi
|
||||
|
||||
if test -z "$DIR"; then
|
||||
REALCOM="`ls -l $0 |awk '{ print $NF; }'`"
|
||||
DIRSCRIPT=`dirname $REALCOM`
|
||||
case $DIRSCRIPT in
|
||||
\/*)
|
||||
;;
|
||||
*)
|
||||
DIRSCRIPT=`pwd`/$DIRSCRIPT
|
||||
;;
|
||||
esac
|
||||
. $DIRSCRIPT/getarch
|
||||
|
||||
DIR="$MENTAT_MARCDIR"
|
||||
fi
|
||||
|
||||
SRCEXT=.f
|
||||
SRCEXTC=.F
|
||||
RSTEXT=.t08
|
||||
PSTEXT=.t19
|
||||
PSTEXTB=.t16
|
||||
VWFCEXT=.vfs
|
||||
|
||||
slv=$1
|
||||
version=$2
|
||||
ndom_fea_solver=$3
|
||||
ndom_preprocessor=$4
|
||||
hostfile=$5
|
||||
compat=$6
|
||||
job=$7
|
||||
srcfile=$8
|
||||
srcmeth=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
restart=$1
|
||||
postfile=$2
|
||||
viewfactorsfile=$3
|
||||
autorst=$4
|
||||
copy_datfile="-ci $5"
|
||||
copy_postfile="-cr $6"
|
||||
scr_dir=$7
|
||||
dcoup=$8
|
||||
assem_recov_nthread=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
nthread=$1
|
||||
nsolver=$2
|
||||
mode=$3
|
||||
gpu=$4
|
||||
|
||||
if [ "$slv" != "" -a "$slv" != "marc" ]; then
|
||||
slv="-iam sfm"
|
||||
else
|
||||
slv=""
|
||||
fi
|
||||
|
||||
if [ "$ndom_fea_solver" != "" -a "$ndom_fea_solver" != "1" ]; then
|
||||
nprocds="-nprocds $ndom_fea_solver"
|
||||
else
|
||||
nprocd=""
|
||||
if [ "$ndom_preprocessor" != "" -a "$ndom_preprocessor" != "1" ]; then
|
||||
nprocd="-nprocd $ndom_preprocessor"
|
||||
else
|
||||
nprocd=""
|
||||
fi
|
||||
fi
|
||||
|
||||
if [ "$srcfile" != "" -a "$srcfile" != "-" ]; then
|
||||
srcfile=`echo $srcfile | sed "s/$SRCEXT$//" | sed "s/$SRCEXTC$//"`
|
||||
case "$srcmeth" in
|
||||
-)
|
||||
srcfile="-u $srcfile"
|
||||
;;
|
||||
compsave)
|
||||
srcfile="-u $srcfile -save y"
|
||||
;;
|
||||
runsaved)
|
||||
srcfile=${srcfile%.*}".marc"
|
||||
srcfile="-prog $srcfile"
|
||||
;;
|
||||
esac
|
||||
else
|
||||
srcfile=""
|
||||
fi
|
||||
|
||||
if [ "$restart" != "" -a "$restart" != "-" ]; then
|
||||
restart=`echo $restart | sed "s/$RSTEXT$//"`
|
||||
restart="-r $restart"
|
||||
else
|
||||
restart=""
|
||||
fi
|
||||
|
||||
if [ "$postfile" != "" -a "$postfile" != "-" ]; then
|
||||
postfile=`echo $postfile | sed "s/$PSTEXT$//"`
|
||||
postfile=`echo $postfile | sed "s/$PSTEXTB$//"`
|
||||
postfile="-pid $postfile"
|
||||
else
|
||||
postfile=""
|
||||
fi
|
||||
|
||||
if [ "$viewfactorsfile" != "" -a "$viewfactorsfile" != "-" ]; then
|
||||
viewfactorsfile=`echo $viewfactorsfile | sed "s/$VWFCEXT$//"`
|
||||
viewfactorsfile="-vf $viewfactorsfile"
|
||||
else
|
||||
viewfactorsfile=""
|
||||
fi
|
||||
|
||||
if [ "$hostfile" != "" -a "$hostfile" != "-" ]; then
|
||||
hostfile="-ho $hostfile"
|
||||
else
|
||||
hostfile=""
|
||||
fi
|
||||
|
||||
if [ "$compat" != "" -a "$compat" != "-" ]; then
|
||||
compat="-co $compat"
|
||||
else
|
||||
compat=""
|
||||
fi
|
||||
|
||||
if [ "$scr_dir" != "" -a "$scr_dir" != "-" ]; then
|
||||
scr_dir="-sd $scr_dir"
|
||||
else
|
||||
scr_dir=""
|
||||
fi
|
||||
|
||||
if [ "$dcoup" != "" -a "$dcoup" != "0" ]; then
|
||||
dcoup="-dcoup $dcoup"
|
||||
else
|
||||
dcoup=""
|
||||
fi
|
||||
|
||||
if [ "$assem_recov_nthread" != "" -a "$assem_recov_nthread" != "1" ]; then
|
||||
assem_recov_nthread="-nthread_elem $assem_recov_nthread"
|
||||
else
|
||||
assem_recov_nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nthread" != "" -a "$nthread" != "0" -a "$nthread" != "1" ]; then
|
||||
nthread="-nthread $nthread"
|
||||
else
|
||||
nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nsolver" != "" -a "$nsolver" != "0" ]; then
|
||||
nsolver="-nsolver $nsolver"
|
||||
else
|
||||
nsolver=""
|
||||
fi
|
||||
|
||||
case "$mode" in
|
||||
4) mode="-mo i4" ;;
|
||||
8) mode="-mo i8" ;;
|
||||
*) mode= ;;
|
||||
esac
|
||||
|
||||
if [ "$gpu" != "" -a "$gpu" != "-" ]; then
|
||||
gpu="-gpu $gpu"
|
||||
else
|
||||
gpu=""
|
||||
fi
|
||||
|
||||
rm -f $job.cnt
|
||||
rm -f $job.sts
|
||||
rm -f $job.out
|
||||
rm -f $job.log
|
||||
|
||||
# To prevent a mismatch with the python version used by the solver
|
||||
# do *not* prepend $MENTAT_INSTALL_DIR/python/bin to environment variable PATH
|
||||
# unset environment variables PYTHONHOME and PYTHONPATH
|
||||
unset PYTHONHOME
|
||||
unset PYTHONPATH
|
||||
|
||||
"${DIR}/tools/run_damask_l" $slv -j $job -v n -b y $nprocds $nprocd -autorst $autorst \
|
||||
$srcfile $restart $postfile $viewfactorsfile $hostfile \
|
||||
$compat $copy_datfile $copy_postfile $scr_dir $dcoup \
|
||||
$assem_recov_nthread $nthread $nsolver $mode $gpu > /dev/null 2>&1
|
||||
sleep 1
|
||||
exit 0
|
||||
|
|
@ -1,52 +0,0 @@
|
|||
#!/bin/ksh
|
||||
# 1st arg: $DIR
|
||||
# 2nd arg: $DIRJOB
|
||||
# 3rd arg: $user
|
||||
# 4th arg: $program
|
||||
DIR=$1
|
||||
user=$3
|
||||
program=$4
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
|
||||
|
||||
# add BLAS options for linking
|
||||
BLAS="%BLAS%"
|
||||
|
||||
. $DIR/tools/include
|
||||
DIRJOB=$2
|
||||
cd $DIRJOB
|
||||
echo "Compiling and linking user subroutine $user on host `hostname`"
|
||||
echo "program: $program"
|
||||
$DFORTRAN $user || \
|
||||
{
|
||||
echo "$0: compile failed for $user"
|
||||
exit 1
|
||||
}
|
||||
/bin/rm $program 2>/dev/null
|
||||
userobj=$usernoext.o
|
||||
|
||||
|
||||
$LOAD ${program} $DIR/lib/main.o\
|
||||
$DIR/lib/blkdta.o $DIR/lib/comm?.o \
|
||||
${userobj-} \
|
||||
$DIR/lib/srclib.a \
|
||||
$MNFLIBS \
|
||||
$MDUSER \
|
||||
../lib/mdsrc.a \
|
||||
../lib/mcvfit.a \
|
||||
$STUBS \
|
||||
${SOLVERLIBS} \
|
||||
$TKLIBS \
|
||||
$MRCLIBS \
|
||||
$METISLIBS \
|
||||
$BLAS \
|
||||
$SYSLIBS || \
|
||||
{
|
||||
echo "$0: link failed for $usernoext.o on host `hostname`"
|
||||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
|
|
@ -1,52 +0,0 @@
|
|||
#!/bin/ksh
|
||||
# 1st arg: $DIR
|
||||
# 2nd arg: $DIRJOB
|
||||
# 3rd arg: $user
|
||||
# 4th arg: $program
|
||||
DIR=$1
|
||||
user=$3
|
||||
program=$4
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
|
||||
|
||||
# add BLAS options for linking
|
||||
BLAS="%BLAS%"
|
||||
|
||||
. $DIR/tools/include
|
||||
DIRJOB=$2
|
||||
cd $DIRJOB
|
||||
echo "Compiling and linking user subroutine $user on host `hostname`"
|
||||
echo "program: $program"
|
||||
$DFORTHIGH $user || \
|
||||
{
|
||||
echo "$0: compile failed for $user"
|
||||
exit 1
|
||||
}
|
||||
/bin/rm $program 2>/dev/null
|
||||
userobj=$usernoext.o
|
||||
|
||||
|
||||
$LOAD ${program} $DIR/lib/main.o\
|
||||
$DIR/lib/blkdta.o $DIR/lib/comm?.o \
|
||||
${userobj-} \
|
||||
$DIR/lib/srclib.a \
|
||||
$MNFLIBS \
|
||||
$MDUSER \
|
||||
../lib/mdsrc.a \
|
||||
../lib/mcvfit.a \
|
||||
$STUBS \
|
||||
${SOLVERLIBS} \
|
||||
$TKLIBS \
|
||||
$MRCLIBS \
|
||||
$METISLIBS \
|
||||
$BLAS \
|
||||
$SYSLIBS || \
|
||||
{
|
||||
echo "$0: link failed for $usernoext.o on host `hostname`"
|
||||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
|
|
@ -1,52 +0,0 @@
|
|||
#!/bin/ksh
|
||||
# 1st arg: $DIR
|
||||
# 2nd arg: $DIRJOB
|
||||
# 3rd arg: $user
|
||||
# 4th arg: $program
|
||||
DIR=$1
|
||||
user=$3
|
||||
program=$4
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
|
||||
|
||||
# add BLAS options for linking
|
||||
BLAS="%BLAS%"
|
||||
|
||||
. $DIR/tools/include
|
||||
DIRJOB=$2
|
||||
cd $DIRJOB
|
||||
echo "Compiling and linking user subroutine $user on host `hostname`"
|
||||
echo "program: $program"
|
||||
$DFORTLOW $user || \
|
||||
{
|
||||
echo "$0: compile failed for $user"
|
||||
exit 1
|
||||
}
|
||||
/bin/rm $program 2>/dev/null
|
||||
userobj=$usernoext.o
|
||||
|
||||
|
||||
$LOAD ${program} $DIR/lib/main.o\
|
||||
$DIR/lib/blkdta.o $DIR/lib/comm?.o \
|
||||
${userobj-} \
|
||||
$DIR/lib/srclib.a \
|
||||
$MNFLIBS \
|
||||
$MDUSER \
|
||||
../lib/mdsrc.a \
|
||||
../lib/mcvfit.a \
|
||||
$STUBS \
|
||||
${SOLVERLIBS} \
|
||||
$TKLIBS \
|
||||
$MRCLIBS \
|
||||
$METISLIBS \
|
||||
$BLAS \
|
||||
$SYSLIBS || \
|
||||
{
|
||||
echo "$0: link failed for $usernoext.o on host `hostname`"
|
||||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
|
|
@ -1,8 +0,0 @@
|
|||
#!/bin/sh
|
||||
|
||||
if [ "$1" = "" ]; then
|
||||
echo "usage: $0 job_name"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo STOP > $1.cnt
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
#!/bin/sh
|
||||
|
||||
if [ "$1" = "" ]; then
|
||||
echo "usage: $0 job_name"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo STOP > $1.cnt
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
#!/bin/sh
|
||||
|
||||
if [ "$1" = "" ]; then
|
||||
echo "usage: $0 job_name"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo STOP > $1.cnt
|
||||
|
|
@ -1,187 +0,0 @@
|
|||
#!/bin/sh
|
||||
#
|
||||
# The exit status of this script is read by Mentat.
|
||||
# Normal exit status is 0.
|
||||
#
|
||||
|
||||
DIR=%INSTALLDIR%/marc%VERSION%
|
||||
if test $MARCDIR1
|
||||
then
|
||||
DIR=$MARCDIR1
|
||||
fi
|
||||
|
||||
if test -z "$DIR"; then
|
||||
REALCOM="`ls -l $0 |awk '{ print $NF; }'`"
|
||||
DIRSCRIPT=`dirname $REALCOM`
|
||||
case $DIRSCRIPT in
|
||||
\/*)
|
||||
;;
|
||||
*)
|
||||
DIRSCRIPT=`pwd`/$DIRSCRIPT
|
||||
;;
|
||||
esac
|
||||
. $DIRSCRIPT/getarch
|
||||
|
||||
DIR="$MENTAT_MARCDIR"
|
||||
fi
|
||||
|
||||
SRCEXT=.f
|
||||
SRCEXTC=.F
|
||||
RSTEXT=.t08
|
||||
PSTEXT=.t19
|
||||
PSTEXTB=.t16
|
||||
VWFCEXT=.vfs
|
||||
|
||||
slv=$1
|
||||
version=$2
|
||||
ndom_fea_solver=$3
|
||||
ndom_preprocessor=$4
|
||||
hostfile=$5
|
||||
compat=$6
|
||||
job=$7
|
||||
srcfile=$8
|
||||
srcmeth=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
restart=$1
|
||||
postfile=$2
|
||||
viewfactorsfile=$3
|
||||
autorst=$4
|
||||
copy_datfile="-ci $5"
|
||||
copy_postfile="-cr $6"
|
||||
scr_dir=$7
|
||||
dcoup=$8
|
||||
assem_recov_nthread=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
nthread=$1
|
||||
nsolver=$2
|
||||
mode=$3
|
||||
gpu=$4
|
||||
|
||||
if [ "$slv" != "" -a "$slv" != "marc" ]; then
|
||||
slv="-iam sfm"
|
||||
else
|
||||
slv=""
|
||||
fi
|
||||
|
||||
if [ "$ndom_fea_solver" != "" -a "$ndom_fea_solver" != "1" ]; then
|
||||
nprocds="-nprocds $ndom_fea_solver"
|
||||
else
|
||||
nprocd=""
|
||||
if [ "$ndom_preprocessor" != "" -a "$ndom_preprocessor" != "1" ]; then
|
||||
nprocd="-nprocd $ndom_preprocessor"
|
||||
else
|
||||
nprocd=""
|
||||
fi
|
||||
fi
|
||||
|
||||
if [ "$srcfile" != "" -a "$srcfile" != "-" ]; then
|
||||
srcfile=`echo $srcfile | sed "s/$SRCEXT$//" | sed "s/$SRCEXTC$//"`
|
||||
case "$srcmeth" in
|
||||
-)
|
||||
srcfile="-u $srcfile"
|
||||
;;
|
||||
compsave)
|
||||
srcfile="-u $srcfile -save y"
|
||||
;;
|
||||
runsaved)
|
||||
srcfile=${srcfile%.*}".marc"
|
||||
srcfile="-prog $srcfile"
|
||||
;;
|
||||
esac
|
||||
else
|
||||
srcfile=""
|
||||
fi
|
||||
|
||||
if [ "$restart" != "" -a "$restart" != "-" ]; then
|
||||
restart=`echo $restart | sed "s/$RSTEXT$//"`
|
||||
restart="-r $restart"
|
||||
else
|
||||
restart=""
|
||||
fi
|
||||
|
||||
if [ "$postfile" != "" -a "$postfile" != "-" ]; then
|
||||
postfile=`echo $postfile | sed "s/$PSTEXT$//"`
|
||||
postfile=`echo $postfile | sed "s/$PSTEXTB$//"`
|
||||
postfile="-pid $postfile"
|
||||
else
|
||||
postfile=""
|
||||
fi
|
||||
|
||||
if [ "$viewfactorsfile" != "" -a "$viewfactorsfile" != "-" ]; then
|
||||
viewfactorsfile=`echo $viewfactorsfile | sed "s/$VWFCEXT$//"`
|
||||
viewfactorsfile="-vf $viewfactorsfile"
|
||||
else
|
||||
viewfactorsfile=""
|
||||
fi
|
||||
|
||||
if [ "$hostfile" != "" -a "$hostfile" != "-" ]; then
|
||||
hostfile="-ho $hostfile"
|
||||
else
|
||||
hostfile=""
|
||||
fi
|
||||
|
||||
if [ "$compat" != "" -a "$compat" != "-" ]; then
|
||||
compat="-co $compat"
|
||||
else
|
||||
compat=""
|
||||
fi
|
||||
|
||||
if [ "$scr_dir" != "" -a "$scr_dir" != "-" ]; then
|
||||
scr_dir="-sd $scr_dir"
|
||||
else
|
||||
scr_dir=""
|
||||
fi
|
||||
|
||||
if [ "$dcoup" != "" -a "$dcoup" != "0" ]; then
|
||||
dcoup="-dcoup $dcoup"
|
||||
else
|
||||
dcoup=""
|
||||
fi
|
||||
|
||||
if [ "$assem_recov_nthread" != "" -a "$assem_recov_nthread" != "1" ]; then
|
||||
assem_recov_nthread="-nthread_elem $assem_recov_nthread"
|
||||
else
|
||||
assem_recov_nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nthread" != "" -a "$nthread" != "0" -a "$nthread" != "1" ]; then
|
||||
nthread="-nthread $nthread"
|
||||
else
|
||||
nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nsolver" != "" -a "$nsolver" != "0" ]; then
|
||||
nsolver="-nsolver $nsolver"
|
||||
else
|
||||
nsolver=""
|
||||
fi
|
||||
|
||||
case "$mode" in
|
||||
4) mode="-mo i4" ;;
|
||||
8) mode="-mo i8" ;;
|
||||
*) mode= ;;
|
||||
esac
|
||||
|
||||
if [ "$gpu" != "" -a "$gpu" != "-" ]; then
|
||||
gpu="-gpu $gpu"
|
||||
else
|
||||
gpu=""
|
||||
fi
|
||||
|
||||
rm -f $job.cnt
|
||||
rm -f $job.sts
|
||||
rm -f $job.out
|
||||
rm -f $job.log
|
||||
|
||||
# To prevent a mismatch with the python version used by the solver
|
||||
# do *not* prepend $MENTAT_INSTALL_DIR/python/bin to environment variable PATH
|
||||
# unset environment variables PYTHONHOME and PYTHONPATH
|
||||
unset PYTHONHOME
|
||||
unset PYTHONPATH
|
||||
|
||||
"${DIR}/tools/run_damask_h" $slv -j $job -v n -b y $nprocds $nprocd -autorst $autorst \
|
||||
$srcfile $restart $postfile $viewfactorsfile $hostfile \
|
||||
$compat $copy_datfile $copy_postfile $scr_dir $dcoup \
|
||||
$assem_recov_nthread $nthread $nsolver $mode $gpu > /dev/null 2>&1
|
||||
sleep 1
|
||||
exit 0
|
||||
|
|
@ -1,187 +0,0 @@
|
|||
#!/bin/sh
|
||||
#
|
||||
# The exit status of this script is read by Mentat.
|
||||
# Normal exit status is 0.
|
||||
#
|
||||
|
||||
DIR=%INSTALLDIR%/marc%VERSION%
|
||||
if test $MARCDIR1
|
||||
then
|
||||
DIR=$MARCDIR1
|
||||
fi
|
||||
|
||||
if test -z "$DIR"; then
|
||||
REALCOM="`ls -l $0 |awk '{ print $NF; }'`"
|
||||
DIRSCRIPT=`dirname $REALCOM`
|
||||
case $DIRSCRIPT in
|
||||
\/*)
|
||||
;;
|
||||
*)
|
||||
DIRSCRIPT=`pwd`/$DIRSCRIPT
|
||||
;;
|
||||
esac
|
||||
. $DIRSCRIPT/getarch
|
||||
|
||||
DIR="$MENTAT_MARCDIR"
|
||||
fi
|
||||
|
||||
SRCEXT=.f
|
||||
SRCEXTC=.F
|
||||
RSTEXT=.t08
|
||||
PSTEXT=.t19
|
||||
PSTEXTB=.t16
|
||||
VWFCEXT=.vfs
|
||||
|
||||
slv=$1
|
||||
version=$2
|
||||
ndom_fea_solver=$3
|
||||
ndom_preprocessor=$4
|
||||
hostfile=$5
|
||||
compat=$6
|
||||
job=$7
|
||||
srcfile=$8
|
||||
srcmeth=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
restart=$1
|
||||
postfile=$2
|
||||
viewfactorsfile=$3
|
||||
autorst=$4
|
||||
copy_datfile="-ci $5"
|
||||
copy_postfile="-cr $6"
|
||||
scr_dir=$7
|
||||
dcoup=$8
|
||||
assem_recov_nthread=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
nthread=$1
|
||||
nsolver=$2
|
||||
mode=$3
|
||||
gpu=$4
|
||||
|
||||
if [ "$slv" != "" -a "$slv" != "marc" ]; then
|
||||
slv="-iam sfm"
|
||||
else
|
||||
slv=""
|
||||
fi
|
||||
|
||||
if [ "$ndom_fea_solver" != "" -a "$ndom_fea_solver" != "1" ]; then
|
||||
nprocds="-nprocds $ndom_fea_solver"
|
||||
else
|
||||
nprocd=""
|
||||
if [ "$ndom_preprocessor" != "" -a "$ndom_preprocessor" != "1" ]; then
|
||||
nprocd="-nprocd $ndom_preprocessor"
|
||||
else
|
||||
nprocd=""
|
||||
fi
|
||||
fi
|
||||
|
||||
if [ "$srcfile" != "" -a "$srcfile" != "-" ]; then
|
||||
srcfile=`echo $srcfile | sed "s/$SRCEXT$//" | sed "s/$SRCEXTC$//"`
|
||||
case "$srcmeth" in
|
||||
-)
|
||||
srcfile="-u $srcfile"
|
||||
;;
|
||||
compsave)
|
||||
srcfile="-u $srcfile -save y"
|
||||
;;
|
||||
runsaved)
|
||||
srcfile=${srcfile%.*}".marc"
|
||||
srcfile="-prog $srcfile"
|
||||
;;
|
||||
esac
|
||||
else
|
||||
srcfile=""
|
||||
fi
|
||||
|
||||
if [ "$restart" != "" -a "$restart" != "-" ]; then
|
||||
restart=`echo $restart | sed "s/$RSTEXT$//"`
|
||||
restart="-r $restart"
|
||||
else
|
||||
restart=""
|
||||
fi
|
||||
|
||||
if [ "$postfile" != "" -a "$postfile" != "-" ]; then
|
||||
postfile=`echo $postfile | sed "s/$PSTEXT$//"`
|
||||
postfile=`echo $postfile | sed "s/$PSTEXTB$//"`
|
||||
postfile="-pid $postfile"
|
||||
else
|
||||
postfile=""
|
||||
fi
|
||||
|
||||
if [ "$viewfactorsfile" != "" -a "$viewfactorsfile" != "-" ]; then
|
||||
viewfactorsfile=`echo $viewfactorsfile | sed "s/$VWFCEXT$//"`
|
||||
viewfactorsfile="-vf $viewfactorsfile"
|
||||
else
|
||||
viewfactorsfile=""
|
||||
fi
|
||||
|
||||
if [ "$hostfile" != "" -a "$hostfile" != "-" ]; then
|
||||
hostfile="-ho $hostfile"
|
||||
else
|
||||
hostfile=""
|
||||
fi
|
||||
|
||||
if [ "$compat" != "" -a "$compat" != "-" ]; then
|
||||
compat="-co $compat"
|
||||
else
|
||||
compat=""
|
||||
fi
|
||||
|
||||
if [ "$scr_dir" != "" -a "$scr_dir" != "-" ]; then
|
||||
scr_dir="-sd $scr_dir"
|
||||
else
|
||||
scr_dir=""
|
||||
fi
|
||||
|
||||
if [ "$dcoup" != "" -a "$dcoup" != "0" ]; then
|
||||
dcoup="-dcoup $dcoup"
|
||||
else
|
||||
dcoup=""
|
||||
fi
|
||||
|
||||
if [ "$assem_recov_nthread" != "" -a "$assem_recov_nthread" != "1" ]; then
|
||||
assem_recov_nthread="-nthread_elem $assem_recov_nthread"
|
||||
else
|
||||
assem_recov_nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nthread" != "" -a "$nthread" != "0" -a "$nthread" != "1" ]; then
|
||||
nthread="-nthread $nthread"
|
||||
else
|
||||
nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nsolver" != "" -a "$nsolver" != "0" ]; then
|
||||
nsolver="-nsolver $nsolver"
|
||||
else
|
||||
nsolver=""
|
||||
fi
|
||||
|
||||
case "$mode" in
|
||||
4) mode="-mo i4" ;;
|
||||
8) mode="-mo i8" ;;
|
||||
*) mode= ;;
|
||||
esac
|
||||
|
||||
if [ "$gpu" != "" -a "$gpu" != "-" ]; then
|
||||
gpu="-gpu $gpu"
|
||||
else
|
||||
gpu=""
|
||||
fi
|
||||
|
||||
rm -f $job.cnt
|
||||
rm -f $job.sts
|
||||
rm -f $job.out
|
||||
rm -f $job.log
|
||||
|
||||
# To prevent a mismatch with the python version used by the solver
|
||||
# do *not* prepend $MENTAT_INSTALL_DIR/python/bin to environment variable PATH
|
||||
# unset environment variables PYTHONHOME and PYTHONPATH
|
||||
unset PYTHONHOME
|
||||
unset PYTHONPATH
|
||||
|
||||
"${DIR}/tools/run_damask" $slv -j $job -v n -b y $nprocds $nprocd -autorst $autorst \
|
||||
$srcfile $restart $postfile $viewfactorsfile $hostfile \
|
||||
$compat $copy_datfile $copy_postfile $scr_dir $dcoup \
|
||||
$assem_recov_nthread $nthread $nsolver $mode $gpu > /dev/null 2>&1
|
||||
sleep 1
|
||||
exit 0
|
||||
|
|
@ -1,187 +0,0 @@
|
|||
#!/bin/sh
|
||||
#
|
||||
# The exit status of this script is read by Mentat.
|
||||
# Normal exit status is 0.
|
||||
#
|
||||
|
||||
DIR=%INSTALLDIR%/marc%VERSION%
|
||||
if test $MARCDIR1
|
||||
then
|
||||
DIR=$MARCDIR1
|
||||
fi
|
||||
|
||||
if test -z "$DIR"; then
|
||||
REALCOM="`ls -l $0 |awk '{ print $NF; }'`"
|
||||
DIRSCRIPT=`dirname $REALCOM`
|
||||
case $DIRSCRIPT in
|
||||
\/*)
|
||||
;;
|
||||
*)
|
||||
DIRSCRIPT=`pwd`/$DIRSCRIPT
|
||||
;;
|
||||
esac
|
||||
. $DIRSCRIPT/getarch
|
||||
|
||||
DIR="$MENTAT_MARCDIR"
|
||||
fi
|
||||
|
||||
SRCEXT=.f
|
||||
SRCEXTC=.F
|
||||
RSTEXT=.t08
|
||||
PSTEXT=.t19
|
||||
PSTEXTB=.t16
|
||||
VWFCEXT=.vfs
|
||||
|
||||
slv=$1
|
||||
version=$2
|
||||
ndom_fea_solver=$3
|
||||
ndom_preprocessor=$4
|
||||
hostfile=$5
|
||||
compat=$6
|
||||
job=$7
|
||||
srcfile=$8
|
||||
srcmeth=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
restart=$1
|
||||
postfile=$2
|
||||
viewfactorsfile=$3
|
||||
autorst=$4
|
||||
copy_datfile="-ci $5"
|
||||
copy_postfile="-cr $6"
|
||||
scr_dir=$7
|
||||
dcoup=$8
|
||||
assem_recov_nthread=$9
|
||||
shift 9 # cannot use $10, $11, ...
|
||||
nthread=$1
|
||||
nsolver=$2
|
||||
mode=$3
|
||||
gpu=$4
|
||||
|
||||
if [ "$slv" != "" -a "$slv" != "marc" ]; then
|
||||
slv="-iam sfm"
|
||||
else
|
||||
slv=""
|
||||
fi
|
||||
|
||||
if [ "$ndom_fea_solver" != "" -a "$ndom_fea_solver" != "1" ]; then
|
||||
nprocds="-nprocds $ndom_fea_solver"
|
||||
else
|
||||
nprocd=""
|
||||
if [ "$ndom_preprocessor" != "" -a "$ndom_preprocessor" != "1" ]; then
|
||||
nprocd="-nprocd $ndom_preprocessor"
|
||||
else
|
||||
nprocd=""
|
||||
fi
|
||||
fi
|
||||
|
||||
if [ "$srcfile" != "" -a "$srcfile" != "-" ]; then
|
||||
srcfile=`echo $srcfile | sed "s/$SRCEXT$//" | sed "s/$SRCEXTC$//"`
|
||||
case "$srcmeth" in
|
||||
-)
|
||||
srcfile="-u $srcfile"
|
||||
;;
|
||||
compsave)
|
||||
srcfile="-u $srcfile -save y"
|
||||
;;
|
||||
runsaved)
|
||||
srcfile=${srcfile%.*}".marc"
|
||||
srcfile="-prog $srcfile"
|
||||
;;
|
||||
esac
|
||||
else
|
||||
srcfile=""
|
||||
fi
|
||||
|
||||
if [ "$restart" != "" -a "$restart" != "-" ]; then
|
||||
restart=`echo $restart | sed "s/$RSTEXT$//"`
|
||||
restart="-r $restart"
|
||||
else
|
||||
restart=""
|
||||
fi
|
||||
|
||||
if [ "$postfile" != "" -a "$postfile" != "-" ]; then
|
||||
postfile=`echo $postfile | sed "s/$PSTEXT$//"`
|
||||
postfile=`echo $postfile | sed "s/$PSTEXTB$//"`
|
||||
postfile="-pid $postfile"
|
||||
else
|
||||
postfile=""
|
||||
fi
|
||||
|
||||
if [ "$viewfactorsfile" != "" -a "$viewfactorsfile" != "-" ]; then
|
||||
viewfactorsfile=`echo $viewfactorsfile | sed "s/$VWFCEXT$//"`
|
||||
viewfactorsfile="-vf $viewfactorsfile"
|
||||
else
|
||||
viewfactorsfile=""
|
||||
fi
|
||||
|
||||
if [ "$hostfile" != "" -a "$hostfile" != "-" ]; then
|
||||
hostfile="-ho $hostfile"
|
||||
else
|
||||
hostfile=""
|
||||
fi
|
||||
|
||||
if [ "$compat" != "" -a "$compat" != "-" ]; then
|
||||
compat="-co $compat"
|
||||
else
|
||||
compat=""
|
||||
fi
|
||||
|
||||
if [ "$scr_dir" != "" -a "$scr_dir" != "-" ]; then
|
||||
scr_dir="-sd $scr_dir"
|
||||
else
|
||||
scr_dir=""
|
||||
fi
|
||||
|
||||
if [ "$dcoup" != "" -a "$dcoup" != "0" ]; then
|
||||
dcoup="-dcoup $dcoup"
|
||||
else
|
||||
dcoup=""
|
||||
fi
|
||||
|
||||
if [ "$assem_recov_nthread" != "" -a "$assem_recov_nthread" != "1" ]; then
|
||||
assem_recov_nthread="-nthread_elem $assem_recov_nthread"
|
||||
else
|
||||
assem_recov_nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nthread" != "" -a "$nthread" != "0" -a "$nthread" != "1" ]; then
|
||||
nthread="-nthread $nthread"
|
||||
else
|
||||
nthread=""
|
||||
fi
|
||||
|
||||
if [ "$nsolver" != "" -a "$nsolver" != "0" ]; then
|
||||
nsolver="-nsolver $nsolver"
|
||||
else
|
||||
nsolver=""
|
||||
fi
|
||||
|
||||
case "$mode" in
|
||||
4) mode="-mo i4" ;;
|
||||
8) mode="-mo i8" ;;
|
||||
*) mode= ;;
|
||||
esac
|
||||
|
||||
if [ "$gpu" != "" -a "$gpu" != "-" ]; then
|
||||
gpu="-gpu $gpu"
|
||||
else
|
||||
gpu=""
|
||||
fi
|
||||
|
||||
rm -f $job.cnt
|
||||
rm -f $job.sts
|
||||
rm -f $job.out
|
||||
rm -f $job.log
|
||||
|
||||
# To prevent a mismatch with the python version used by the solver
|
||||
# do *not* prepend $MENTAT_INSTALL_DIR/python/bin to environment variable PATH
|
||||
# unset environment variables PYTHONHOME and PYTHONPATH
|
||||
unset PYTHONHOME
|
||||
unset PYTHONPATH
|
||||
|
||||
"${DIR}/tools/run_damask_l" $slv -j $job -v n -b y $nprocds $nprocd -autorst $autorst \
|
||||
$srcfile $restart $postfile $viewfactorsfile $hostfile \
|
||||
$compat $copy_datfile $copy_postfile $scr_dir $dcoup \
|
||||
$assem_recov_nthread $nthread $nsolver $mode $gpu > /dev/null 2>&1
|
||||
sleep 1
|
||||
exit 0
|
||||
|
|
@ -58,15 +58,9 @@ echo "Editor: $EDITOR"
|
|||
echo ''
|
||||
echo 'adapting Marc tools...'
|
||||
theDIR=$INSTALLDIR/marc$VERSION/tools
|
||||
for filename in 'comp_damask' \
|
||||
'comp_damask_l' \
|
||||
'comp_damask_h' \
|
||||
'comp_damask_mp' \
|
||||
for filename in 'comp_damask_mp' \
|
||||
'comp_damask_lmp' \
|
||||
'comp_damask_hmp' \
|
||||
'run_damask' \
|
||||
'run_damask_l' \
|
||||
'run_damask_h' \
|
||||
'run_damask_mp' \
|
||||
'run_damask_lmp' \
|
||||
'run_damask_hmp' \
|
||||
|
|
@ -85,15 +79,9 @@ for filename in 'edit_window' \
|
|||
'submit4' \
|
||||
'submit5' \
|
||||
'submit6' \
|
||||
'submit7' \
|
||||
'submit8' \
|
||||
'submit9' \
|
||||
'kill4' \
|
||||
'kill5' \
|
||||
'kill6' \
|
||||
'kill7' \
|
||||
'kill8' \
|
||||
'kill9'; do
|
||||
'kill6'; do
|
||||
cp $SCRIPTLOCATION/$VERSION/Mentat_bin/$filename $theDIR
|
||||
echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g"
|
||||
echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g"
|
||||
|
|
@ -122,8 +110,8 @@ echo ''
|
|||
echo 'setting file access rights...'
|
||||
for filename in marc$VERSION/tools/run_damask* \
|
||||
marc$VERSION/tools/comp_damask* \
|
||||
mentat$VERSION/bin/submit{4..9} \
|
||||
mentat$VERSION/bin/kill{4..9} ; do
|
||||
mentat$VERSION/bin/submit{4..6} \
|
||||
mentat$VERSION/bin/kill{4..6} ; do
|
||||
chmod 755 $INSTALLDIR/${filename}
|
||||
done
|
||||
|
||||
|
|
@ -142,10 +130,7 @@ if [ -d "$BIN_DIR" ]; then
|
|||
echo 'creating symlinks ...'
|
||||
echo''
|
||||
theDIR=$INSTALLDIR/marc$VERSION/tools
|
||||
for filename in 'run_damask' \
|
||||
'run_damask_l' \
|
||||
'run_damask_h' \
|
||||
'run_damask_mp' \
|
||||
for filename in 'run_damask_mp' \
|
||||
'run_damask_lmp' \
|
||||
'run_damask_hmp'; do
|
||||
echo ${filename:4}$VERSION
|
||||
|
|
|
|||
|
|
@ -21,16 +21,10 @@ The structure of this directory should be (VERSION = 20XX or 20XX.Y)
|
|||
./installation.txt this text
|
||||
./apply_MPIE_modifications script file to apply modifications to the installation
|
||||
./VERSION/Marc_tools/comp_user.original original file from installation
|
||||
./VERSION/Marc_tools/comp_damask modified version using -O1 optimization
|
||||
./VERSION/Marc_tools/comp_damask_l modified version using -O0 optimization
|
||||
./VERSION/Marc_tools/comp_damask_h modified version using -O2 optimization
|
||||
./VERSION/Marc_tools/comp_damask_mp modified version using -O1 optimization and OpenMP
|
||||
./VERSION/Marc_tools/comp_damask_lmp modified version using -O0 optimization and OpenMP
|
||||
./VERSION/Marc_tools/comp_damask_hmp modified version using -O2 optimization and OpenMP
|
||||
./VERSION/Marc_tools/run_marc.original original file from installation
|
||||
./VERSION/Marc_tools/run_damask modified version using -O1 optimization
|
||||
./VERSION/Marc_tools/run_damask_l modified version using -O0 optimization
|
||||
./VERSION/Marc_tools/run_damask_h modified version using -O2 optimization
|
||||
./VERSION/Marc_tools/run_damask_mp modified version using -O1 optimization and OpenMP
|
||||
./VERSION/Marc_tools/run_damask_lmp modified version using -O0 optimization and OpenMP
|
||||
./VERSION/Marc_tools/run_damask_hmp modified version using -O2 optimization and OpenMP
|
||||
|
|
@ -42,14 +36,8 @@ The structure of this directory should be (VERSION = 20XX or 20XX.Y)
|
|||
./VERSION/Mentat_bin/submit4 modified version of original calling run_h_marc
|
||||
./VERSION/Mentat_bin/submit5 modified version of original calling run_marc
|
||||
./VERSION/Mentat_bin/submit6 modified version of original calling run_l_marc
|
||||
./VERSION/Mentat_bin/submit7 modified version of original calling run_hmp_marc
|
||||
./VERSION/Mentat_bin/submit8 modified version of original calling run_mp_marc
|
||||
./VERSION/Mentat_bin/submit9 modified version of original calling run_lmp_marc
|
||||
./VERSION/Mentat_bin/kill4 kill file for submit4, identical to original kill1
|
||||
./VERSION/Mentat_bin/kill5 kill file for submit5, identical to original kill1
|
||||
./VERSION/Mentat_bin/kill6 kill file for submit6, identical to original kill1
|
||||
./VERSION/Mentat_bin/kill7 kill file for submit7, identical to original kill1
|
||||
./VERSION/Mentat_bin/kill8 kill file for submit8, identical to original kill1
|
||||
./VERSION/Mentat_bin/kill9 kill file for submit9, identical to original kill1
|
||||
./VERSION/Mentat_menus/job_run.ms.original original file from installation
|
||||
./VERSION/Mentat_menus/job_run.ms modified version adding DAMASK menu to run menu
|
||||
|
|
|
|||
Loading…
Reference in New Issue