commenting and discussing with Franz
This commit is contained in:
Martin Diehl
parent
ecda57e29a
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ac493adc5c
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@ -872,25 +872,27 @@ subroutine calcCells(thisMesh,elem,connectivity_elem)
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class(tMesh) :: thisMesh
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type(tElement) :: elem
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integer(pInt),dimension(:,:), intent(in) :: connectivity_elem
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integer(pInt),dimension(:,:), allocatable :: con_elem,temp,con,parentsAndWeights,candidates_global
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integer(pInt),dimension(:), allocatable :: l, nodes, candidates_local
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integer(pInt),dimension(:,:,:), allocatable :: con_cell,connectivity_cell
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integer(pInt),dimension(:,:), allocatable :: sorted,test,connectivity_cell_reshape
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integer,dimension(:,:), intent(in) :: connectivity_elem
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integer,dimension(:,:), allocatable :: con_elem,temp,con,parentsAndWeights,candidates_global
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integer,dimension(:), allocatable :: l, nodes, candidates_local
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integer,dimension(:,:,:), allocatable :: con_cell,connectivity_cell
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integer,dimension(:,:), allocatable :: sorted,test,connectivity_cell_reshape
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real(pReal), dimension(:,:), allocatable :: coordinates,nodes5
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integer(pInt) :: e, n, c, p, s,u,i,m,j,nParentNodes,nCellNode,ierr
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integer :: e, n, c, p, s,u,i,m,j,nParentNodes,nCellNode,ierr,Nelem,candidateID
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Nelem = thisMesh%Nelems
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!---------------------------------------------------------------------------------------------------
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! initialize global connectivity to negative local connectivity
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allocate(connectivity_cell(thisMesh%elem%NcellNodesPerCell,thisMesh%elem%nIPs,thisMesh%Nelems))
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connectivity_cell = -spread(thisMesh%elem%cell,3,thisMesh%Nelems) ! local cell node ID
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allocate(connectivity_cell(elem%NcellNodesPerCell,elem%nIPs,Nelem))
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connectivity_cell = -spread(elem%cell,3,Nelem) ! local cell node ID
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!---------------------------------------------------------------------------------------------------
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! set connectivity of cell nodes that conincide with FE nodes (defined by 1 parent node)
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! change to global node ID
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do e = 1, thisMesh%Nelems
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do c = 1, thisMesh%elem%NcellNodes
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realNode: if (count(thisMesh%elem%cellNodeParentNodeWeights(:,c) /= 0_pInt) == 1_pInt) then
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! set connectivity of cell nodes that coincide with FE nodes (defined by 1 parent node)
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! and renumber local (negative) to global (positive) node ID
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do e = 1, Nelem
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do c = 1, elem%NcellNodes
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realNode: if (count(elem%cellNodeParentNodeWeights(:,c) /= 0) == 1) then
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where(connectivity_cell(:,:,e) == -c)
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connectivity_cell(:,:,e) = connectivity_elem(c,e)
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end where
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@ -900,109 +902,114 @@ subroutine calcCells(thisMesh,elem,connectivity_elem)
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nCellNode = thisMesh%nNodes
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do nParentNodes = 2, thisMesh%elem%nNodes
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!---------------------------------------------------------------------------------------------------
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! set connectivity of cell nodes that are defined by 2,...,nNodes real nodes
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do nParentNodes = 2, elem%nNodes
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! get IDs of local cell nodes that are defined by the current number of parent nodes
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candidates_local = [integer(pInt)::]
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do c = 1, thisMesh%elem%NcellNodes
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if (count(thisMesh%elem%cellNodeParentNodeWeights(:,c) /= 0_pInt) == nParentNodes) &
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candidates_local = [candidates_local,c]
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enddo
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s = size(candidates_local)
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if (allocated(candidates_global)) deallocate(candidates_global)
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allocate(candidates_global(nParentNodes*2_pInt+2_pInt,s*thisMesh%Nelems))
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parentsAndWeights = reshape([(0_pInt, i = 1_pInt,2_pInt*nParentNodes)],[nParentNodes,2])
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do e = 1_pInt, thisMesh%Nelems
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do i = 1_pInt, s
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c = candidates_local(i)
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m = 0_pInt
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do p = 1_pInt, size(thisMesh%elem%cellNodeParentNodeWeights(:,c))
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if (thisMesh%elem%cellNodeParentNodeWeights(p,c) /= 0_pInt) then ! real node 'c' partly defines cell node 'n'
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m = m + 1_pInt
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parentsAndWeights(m,1:2) = [connectivity_elem(p,e),thisMesh%elem%cellNodeParentNodeWeights(p,c)]
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endif
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enddo
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! store (and order) real nodes and their weights together with the element number and local ID
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do p = 1_pInt, nParentNodes
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m = maxloc(parentsAndWeights(:,1),1)
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candidates_global(p, (e-1)*s+i) = parentsAndWeights(m,1)
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parentsAndWeights(m,1) = -huge(i) ! out of the competition
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candidates_global(p+nParentNodes,(e-1)*s+i) = parentsAndWeights(m,2)
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candidates_global(nParentNodes*2+1:nParentNodes*2+2,(e-1)*s+i) = [e,c]
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enddo
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enddo
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enddo
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! sort according to real node IDs (from left to right)
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call math_sort(candidates_global,sortDim=1)
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do p = 2, nParentNodes-1 ! why -1?
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n = 1
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do while(n <= s*thisMesh%Nelems)
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j=0
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do while (n+j<= s*thisMesh%Nelems)
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if (candidates_global(p-1,n+j)/=candidates_global(p-1,n)) exit
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j = j + 1
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! get IDs of local cell nodes that are defined by the current number of parent nodes
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candidates_local = [integer::]
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do c = 1, elem%NcellNodes
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if (count(elem%cellNodeParentNodeWeights(:,c) /= 0) == nParentNodes) &
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candidates_local = [candidates_local,c]
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enddo
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s = size(candidates_local)
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if (allocated(candidates_global)) deallocate(candidates_global)
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allocate(candidates_global(nParentNodes*2+2,s*Nelem)) ! stores parent node ID + weight together with element ID and cellnode id (local)
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parentsAndWeights = reshape([(0, i = 1,2*nParentNodes)],[nParentNodes,2]) ! allocate without deallocate
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do e = 1, Nelem
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do i = 1, size(candidates_local)
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candidateID = (e-1)*size(candidates_local)+i ! including duplicates (Nelem*size(candidates_local))
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c = candidates_local(i) ! c is local cellnode ID for connectivity
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p = 0
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do j = 1, size(elem%cellNodeParentNodeWeights(:,c))
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if (elem%cellNodeParentNodeWeights(j,c) /= 0) then ! real node 'j' partly defines cell node 'c'
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p = p + 1
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parentsAndWeights(p,1:2) = [connectivity_elem(j,e),elem%cellNodeParentNodeWeights(j,c)]
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endif
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enddo
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! store (and order) real node IDs and their weights together with the element number and local ID
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do p = 1, nParentNodes
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m = maxloc(parentsAndWeights(:,1),1)
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candidates_global(p, candidateID) = parentsAndWeights(m,1)
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candidates_global(p+nParentNodes, candidateID) = parentsAndWeights(m,2)
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candidates_global(nParentNodes*2+1:nParentNodes*2+2,candidateID) = [e,c]
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parentsAndWeights(m,1) = -huge(parentsAndWeights(m,1)) ! out of the competition
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enddo
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enddo
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e = n+j-1
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if (any(candidates_global(p,n:e)/=candidates_global(p,n))) &
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call math_sort(candidates_global(:,n:e),sortDim=p)
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n = e+1
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enddo
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enddo
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! find duplicates (trivial for sorted IDs)
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i = 0
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n = 1
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do while(n <= s*thisMesh%Nelems)
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enddo
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! sort according to real node IDs + weight (from left to right)
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call math_sort(candidates_global,sortDim=1) ! sort according to first column
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do p = 2, nParentNodes*2
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n = 1
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do while(n <= size(candidates_local)*Nelem)
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j=0
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do while (n+j<= size(candidates_local)*Nelem)
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if (candidates_global(p-1,n+j)/=candidates_global(p-1,n)) exit
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j = j + 1
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enddo
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e = n+j-1
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if (any(candidates_global(p,n:e)/=candidates_global(p,n))) &
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call math_sort(candidates_global(:,n:e),sortDim=p)
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n = e+1
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enddo
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enddo
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! count unique cell nodes (trivial for sorted IDs + weights)
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i = 0 ! counts unique cell nodes (defined by current number of parents)
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n = 1
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do while(n <= size(candidates_local)*Nelem)
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j=0
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do while (n+j<= s*thisMesh%Nelems)
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do while (n+j<= size(candidates_local)*Nelem)
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if (any(candidates_global(1:2*nParentNodes,n+j)/=candidates_global(1:2*nParentNodes,n))) exit
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j = j + 1
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enddo
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i=i+1
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i = i+1
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n = n+j
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enddo
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! calculate coordinates of cell nodes and insert their ID into the cell conectivity
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coordinates = reshape([(0.0_pReal,j = 1, 3*i)], [3,i])
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i = 1
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n = 1
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do while(n <= size(candidates_local)*Nelem)
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j=0
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parentsAndWeights(:,1) = candidates_global(1:nParentNodes,n+j)
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parentsAndWeights(:,2) = candidates_global(nParentNodes+1:nParentNodes*2,n+j)
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e = candidates_global(nParentNodes*2+1,n+j)
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c = candidates_global(nParentNodes*2+2,n+j)
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do m = 1, nParentNodes
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coordinates(:,i) = coordinates(:,i) &
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+ thisMesh%node_0(:,parentsAndWeights(m,1)) * real(parentsAndWeights(m,2),pReal)
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enddo
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p = i ! ToDo: Hack
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! calculate coordinates of cell nodes and insert their ID into the cell conectivity
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coordinates = reshape([(0.0_pReal,i = 1, 3*s*thisMesh%Nelems)], [3,i])
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i = 0
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n = 1
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do while(n <= s*thisMesh%Nelems)
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j=0
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parentsAndWeights(:,1) = candidates_global(1:nParentNodes,n+j)
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parentsAndWeights(:,2) = candidates_global(nParentNodes+1:nParentNodes*2,n+j)
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e = candidates_global(nParentNodes*2+1,n+j)
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c = candidates_global(nParentNodes*2+2,n+j)
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do m = 1, nParentNodes
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coordinates(:,i+1) = coordinates(:,i+1) &
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+ thisMesh%node_0(:,parentsAndWeights(m,1)) * real(parentsAndWeights(m,2),pReal)
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enddo
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coordinates(:,i+1) = coordinates(:,i+1)/real(sum(parentsAndWeights(:,2)),pReal)
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do while (n+j<= s*thisMesh%Nelems)
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if (any(candidates_global(1:2*nParentNodes,n+j)/=candidates_global(1:2*nParentNodes,n))) exit
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where (connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) == -candidates_global(nParentNodes*2+2,n+j))
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connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) = i+1+nCellNode
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end where
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j = j + 1
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enddo
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i=i+1
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n = n+j
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coordinates(:,i) = coordinates(:,i)/real(sum(parentsAndWeights(:,2)),pReal)
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do while (n+j<= size(candidates_local)*Nelem)
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if (any(candidates_global(1:2*nParentNodes,n+j)/=candidates_global(1:2*nParentNodes,n))) exit
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where (connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) == -candidates_global(nParentNodes*2+2,n+j)) ! still locally defined
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connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) = nCellNode + i ! gets current new cell node id
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end where
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j = j + 1
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enddo
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nCellNode = nCellNode + p
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if (p/=0) nodes5 = reshape([nodes5,coordinates],[3,nCellNode])
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enddo
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thisMesh%node_0 = nodes5
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mesh_cell2 = connectivity_cell
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connectivity_cell_reshape = reshape(connectivity_cell,[thisMesh%elem%NcellNodesPerCell,thisMesh%elem%nIPs*thisMesh%Nelems])
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i=i+1
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n = n+j
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enddo
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nCellNode = nCellNode + i
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if (i/=0) nodes5 = reshape([nodes5,coordinates],[3,nCellNode])
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enddo
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thisMesh%node_0 = nodes5
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mesh_cell2 = connectivity_cell
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connectivity_cell_reshape = reshape(connectivity_cell,[elem%NcellNodesPerCell,elem%nIPs*thisMesh%Nelems])
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#if defined(DAMASK_HDF5)
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call results_openJobFile
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