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Merge remote-tracking branch 'origin/development' into physics-based-hex-interactions

This commit is contained in:
Martin Diehl 2022-01-08 20:45:46 +01:00
parent a23a714bd0 dd6e9a016e
commit a884b99aa9
48 changed files with 1002 additions and 604 deletions
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43
.github/workflows/Fortran.yml vendored
View File

@ -2,11 +2,12 @@ name: Grid and Mesh Solver
on: [push]
env:
HOMEBREW_NO_ANALYTICS: "ON" # Make Homebrew installation a little quicker
HOMEBREW_NO_AUTO_UPDATE: "ON"
HOMEBREW_NO_BOTTLE_SOURCE_FALLBACK: "ON"
HOMEBREW_NO_GITHUB_API: "ON"
HOMEBREW_NO_INSTALL_CLEANUP: "ON"
PETSC_VERSION: '3.16.2'
HOMEBREW_NO_ANALYTICS: 'ON' # Make Homebrew installation a little quicker
HOMEBREW_NO_AUTO_UPDATE: 'ON'
HOMEBREW_NO_BOTTLE_SOURCE_FALLBACK: 'ON'
HOMEBREW_NO_GITHUB_API: 'ON'
HOMEBREW_NO_INSTALL_CLEANUP: 'ON'
jobs:
@ -48,17 +49,17 @@ jobs:
uses: actions/cache@v2
with:
path: download
key: petsc-3.16.0.tar.gz
key: petsc-${{ env.PETSC_VERSION }}.tar.gz
- name: PETSc - Download
if: steps.petsc-download.outputs.cache-hit != 'true'
run: |
wget -q https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.16.0.tar.gz -P download
wget -q https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${PETSC_VERSION}.tar.gz -P download
- name: PETSc - Prepare
run: |
tar -xf download/petsc-3.16.0.tar.gz -C .
export PETSC_DIR=${PWD}/petsc-3.16.0
tar -xf download/petsc-${PETSC_VERSION}.tar.gz -C .
export PETSC_DIR=${PWD}/petsc-${PETSC_VERSION}
export PETSC_ARCH=gcc${GCC_V}
printenv >> $GITHUB_ENV
@ -66,13 +67,13 @@ jobs:
id: petsc-install
uses: actions/cache@v2
with:
path: petsc-3.16.0
key: petsc-3.16.0-${{ matrix.os }}-gcc${{ matrix.gcc_v }}-${{ hashFiles('**/petscversion.h') }}
path: petsc-${{ env.PETSC_VERSION }}
key: petsc-${{ env.PETSC_VERSION }}-${{ matrix.os }}-gcc${{ matrix.gcc_v }}-${{ hashFiles('**/petscversion.h') }}
- name: PETSc - Install (Linux)
if: contains( matrix.os, 'ubuntu')
run: |
cd petsc-3.16.0
cd petsc-${PETSC_VERSION}
./configure --with-fc=gfortran --with-cc=gcc --with-cxx=g++ \
--download-mpich --download-fftw --download-hdf5 --download-hdf5-fortran-bindings=1 --download-zlib \
--with-mpi-f90module-visibility=0
@ -81,7 +82,7 @@ jobs:
- name: PETSc - Install (macOS)
if: contains( matrix.os, 'macos')
run: |
cd petsc-3.16.0
cd petsc-${PETSC_VERSION}
./configure --with-fc=gfortran-${GCC_V} --with-cc=gcc-${GCC_V} --with-cxx=g++-${GCC_V} \
--download-openmpi --download-fftw --download-hdf5 --download-hdf5-fortran-bindings=1 --download-zlib
make all
@ -132,17 +133,17 @@ jobs:
uses: actions/cache@v2
with:
path: download
key: petsc-3.16.0.tar.gz
key: petsc-${{ env.PETSC_VERSION }}.tar.gz
- name: PETSc - Download
if: steps.petsc-download.outputs.cache-hit != 'true'
run: |
wget -q https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.16.0.tar.gz -P download
wget -q https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${PETSC_VERSION}.tar.gz -P download
- name: PETSc - Prepare
run: |
tar -xf download/petsc-3.16.0.tar.gz -C .
export PETSC_DIR=${PWD}/petsc-3.16.0
tar -xf download/petsc-${PETSC_VERSION}.tar.gz -C .
export PETSC_DIR=${PWD}/petsc-${PETSC_VERSION}
export PETSC_ARCH=intel-${INTEL_V}
printenv >> $GITHUB_ENV
@ -150,13 +151,13 @@ jobs:
id: petsc-install
uses: actions/cache@v2
with:
path: petsc-3.16.0
key: petsc-3.16.0-intel-${{ matrix.intel_v }}-${{ hashFiles('**/petscversion.h') }}
path: petsc-${{ env.PETSC_VERSION }}
key: petsc-${{ env.PETSC_VERSION }}-intel-${{ matrix.intel_v }}-${{ hashFiles('**/petscversion.h') }}
- name: PETSc - Install (classic)
if: contains( matrix.intel_v, 'classic')
run: |
cd petsc-3.16.0
cd petsc-${PETSC_VERSION}
./configure --with-fc=mpiifort --with-cc=mpiicc --with-cxx=mpiicpc \
--download-fftw --download-hdf5 --download-hdf5-fortran-bindings=1 --download-zlib
make all
@ -164,7 +165,7 @@ jobs:
- name: PETSc - Install (LLVM)
if: contains( matrix.intel_v, 'llvm')
run: |
cd petsc-3.16.0
cd petsc-${PETSC_VERSION}
./configure --with-fc=mpiifort --with-cc="mpiicc -cc=icx" --with-cxx="mpiicpc -cxx=icpx" \
--download-fftw --download-hdf5 --download-hdf5-fortran-bindings=1 --download-zlib
make all

7
.github/workflows/Python.yml vendored
View File

@ -43,12 +43,13 @@ jobs:
pip install pytest
- name: Install dependencies
# https://github.com/actions/virtual-environments/issues/4790
run: >
sudo apt-get update &&
sudo apt-get install python3-pip python3-pytest python3-pandas python3-scipy
python3-h5py python3-vtk7 python3-matplotlib python3-yaml -y
sudo apt-get remove mysql* &&
sudo apt-get install python3-pandas python3-scipy python3-h5py python3-vtk7 python3-matplotlib python3-yaml -y
- name: Run unit tests
run: |
export PYTHONPATH=${PWD}/python
COLUMNS=256 python -m pytest python
COLUMNS=256 pytest python

50
.gitlab-ci.yml
View File

@ -36,14 +36,17 @@ variables:
# Names of module files to load
# ===============================================================================================
# ++++++++++++ Compiler +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
COMPILER_INTEL: "Compiler/Intel/19.1.2 Libraries/IMKL/2020"
COMPILER_GNU: "Compiler/GNU/10"
COMPILER_GNU: "Compiler/GNU/10"
COMPILER_INTELLLVM: "Compiler/oneAPI/2022.0.1 Libraries/IMKL/2022.0.1"
COMPILER_INTEL: "Compiler/Intel/2022.0.1 Libraries/IMKL/2022.0.1"
# ++++++++++++ MPI ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
MPI_INTEL: "MPI/Intel/19.1.2/IntelMPI/2019"
MPI_GNU: "MPI/GNU/10/OpenMPI/4.1.1"
MPI_INTELLLVM: "MPI/oneAPI/2022.0.1/IntelMPI/2021.5.0"
MPI_INTEL: "MPI/Intel/2022.0.1/IntelMPI/2021.5.0"
# ++++++++++++ PETSc ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
PETSC_INTEL: "Libraries/PETSc/3.16.1/Intel-19.1.2-IntelMPI-2019"
PETSC_GNU: "Libraries/PETSc/3.16.1/GNU-10-OpenMPI-4.1.1"
PETSC_GNU: "Libraries/PETSc/3.16.1/GNU-10-OpenMPI-4.1.1"
PETSC_INTELLLVM: "Libraries/PETSc/3.16.2/oneAPI-2022.0.1-IntelMPI-2021.5.0"
PETSC_INTEL: "Libraries/PETSc/3.16.2/Intel-2022.0.1-IntelMPI-2021.5.0"
# ++++++++++++ MSC Marc +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
MSC: "FEM/MSC/2021.3.1"
IntelMarc: "Compiler/Intel/19.1.2 Libraries/IMKL/2020"
@ -76,20 +79,6 @@ mypy:
###################################################################################################
test_grid_Intel:
stage: compile
script:
- module load ${COMPILER_INTEL} ${MPI_INTEL} ${PETSC_INTEL}
- cd PRIVATE/testing/pytest
- pytest -k 'compile and grid' --basetemp ${TESTROOT}/compile_grid_Intel
test_mesh_Intel:
stage: compile
script:
- module load ${COMPILER_INTEL} ${MPI_INTEL} ${PETSC_INTEL}
- cd PRIVATE/testing/pytest
- pytest -k 'compile and mesh' --basetemp ${TESTROOT}/compile_mesh_Intel
test_grid_GNU:
stage: compile
script:
@ -104,6 +93,27 @@ test_mesh_GNU:
- cd PRIVATE/testing/pytest
- pytest -k 'compile and mesh' --basetemp ${TESTROOT}/compile_mesh_GNU
test_mesh_IntelLLVM:
stage: compile
script:
- module load ${COMPILER_INTELLLVM} ${MPI_INTELLLVM} ${PETSC_INTELLLVM}
- cd PRIVATE/testing/pytest
- pytest -k 'compile and mesh' --basetemp ${TESTROOT}/compile_mesh_IntelLLVM
test_grid_Intel:
stage: compile
script:
- module load ${COMPILER_INTEL} ${MPI_INTEL} ${PETSC_INTEL}
- cd PRIVATE/testing/pytest
- pytest -k 'compile and grid' --basetemp ${TESTROOT}/compile_grid_Intel
test_mesh_Intel:
stage: compile
script:
- module load ${COMPILER_INTEL} ${MPI_INTEL} ${PETSC_INTEL}
- cd PRIVATE/testing/pytest
- pytest -k 'compile and mesh' --basetemp ${TESTROOT}/compile_mesh_Intel
test_Marc:
stage: compile
script:
@ -208,7 +218,7 @@ update_revision:
- git checkout master
- git pull
- git merge $UPDATEDREV -s recursive -X ours # conflicts occur only for inconsistent state
- git push origin master # master is now tested version and has updated VERSION file
- git push
- git checkout development
- git pull
- git merge master -s recursive -X ours -m "[skip ci] Merge branch 'master' into development" # only possible conflict is in VERSION file

2
CMakeLists.txt
View File

@ -82,6 +82,8 @@ if (CMAKE_Fortran_COMPILER_ID STREQUAL "Intel")
include(Compiler-Intel)
elseif(CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
include(Compiler-GNU)
elseif(CMAKE_Fortran_COMPILER_ID STREQUAL "IntelLLVM")
include(Compiler-IntelLLVM)
else()
message(FATAL_ERROR "Compiler type(CMAKE_Fortran_COMPILER_ID) not recognized")
endif()

2
PRIVATE

@ -1 +1 @@
Subproject commit fb4dd2478c00eedf2b5e977b4c2c00dfab523632
Subproject commit e2cf0c5513b575f2775d2c1b9bfba8c22cd40715

3
cmake/Compiler-Intel.cmake
View File

@ -106,8 +106,9 @@ set (DEBUG_FLAGS "${DEBUG_FLAGS} -fpe-all=0")
#set (DEBUG_FLAGS "${DEBUG_FLAGS},stderrors")
# ... warnings about Fortran standard violations are changed to errors
set (DEBUG_FLAGS "${DEBUG_FLAGS} -debug-parameters all")
#set (DEBUG_FLAGS "${DEBUG_FLAGS} -debug-parameters all")
# generate debug information for parameters
# Disabled due to ICE when compiling phase_damage.f90 (not understandable, there is no parameter in there)
# Additional options
# -heap-arrays: Should not be done for OpenMP, but set "ulimit -s unlimited" on shell. Probably it helps also to unlimit other limits

121
cmake/Compiler-IntelLLVM.cmake Normal file
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@ -0,0 +1,121 @@
###################################################################################################
# Intel Compiler
###################################################################################################
if (CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 18.0)
message (FATAL_ERROR "Intel Compiler version: ${CMAKE_Fortran_COMPILER_VERSION} not supported")
endif ()
if (OPENMP)
set (OPENMP_FLAGS "-qopenmp")
endif ()
if (OPTIMIZATION STREQUAL "OFF")
set (OPTIMIZATION_FLAGS "-O0")
elseif (OPTIMIZATION STREQUAL "DEFENSIVE")
set (OPTIMIZATION_FLAGS "-O2")
elseif (OPTIMIZATION STREQUAL "AGGRESSIVE")
set (OPTIMIZATION_FLAGS "-ipo -O3 -fp-model fast=2 -xHost")
# -fast = -ipo, -O3, -no-prec-div, -static, -fp-model fast=2, and -xHost"
endif ()
# -assume std_mod_proc_name (included in -standard-semantics) causes problems if other modules
# (PETSc, HDF5) are not compiled with this option (https://software.intel.com/en-us/forums/intel-fortran-compiler-for-linux-and-mac-os-x/topic/62172)
set (STANDARD_CHECK "-stand f18 -assume nostd_mod_proc_name")
set (LINKER_FLAGS "${LINKER_FLAGS} -shared-intel")
# Link against shared Intel libraries instead of static ones
#------------------------------------------------------------------------------------------------
# Fine tuning compilation options
set (COMPILE_FLAGS "${COMPILE_FLAGS} -fpp")
# preprocessor
set (COMPILE_FLAGS "${COMPILE_FLAGS} -ftz")
# flush underflow to zero, automatically set if -O[1,2,3]
set (COMPILE_FLAGS "${COMPILE_FLAGS} -diag-disable")
# disables warnings ...
set (COMPILE_FLAGS "${COMPILE_FLAGS} 5268")
# ... the text exceeds right hand column allowed on the line (we have only comments there)
set (COMPILE_FLAGS "${COMPILE_FLAGS},7624")
# ... about deprecated forall (has nice syntax and most likely a performance advantage)
set (COMPILE_FLAGS "${COMPILE_FLAGS} -warn")
# enables warnings ...
set (COMPILE_FLAGS "${COMPILE_FLAGS} declarations")
# ... any undeclared names (alternative name: -implicitnone)
set (COMPILE_FLAGS "${COMPILE_FLAGS},general")
# ... warning messages and informational messages are issued by the compiler
set (COMPILE_FLAGS "${COMPILE_FLAGS},usage")
# ... questionable programming practices
set (COMPILE_FLAGS "${COMPILE_FLAGS},interfaces")
# ... checks the interfaces of all SUBROUTINEs called and FUNCTIONs invoked in your compilation against an external set of interface blocks
set (COMPILE_FLAGS "${COMPILE_FLAGS},ignore_loc")
# ... %LOC is stripped from an actual argument
set (COMPILE_FLAGS "${COMPILE_FLAGS},alignments")
# ... data that is not naturally aligned
set (COMPILE_FLAGS "${COMPILE_FLAGS},unused")
# ... declared variables that are never used
# Additional options
# -warn: enables warnings, where
# truncated_source: Determines whether warnings occur when source exceeds the maximum column width in fixed-format files.
# (too many warnings because we have comments beyond character 132)
# uncalled: Determines whether warnings occur when a statement function is never called
# all:
# -name as_is: case sensitive Fortran!
#------------------------------------------------------------------------------------------------
# Runtime debugging
set (DEBUG_FLAGS "${DEBUG_FLAGS} -g")
# Generate symbolic debugging information in the object file
set (DEBUG_FLAGS "${DEBUG_FLAGS} -traceback")
# Generate extra information in the object file to provide source file traceback information when a severe error occurs at run time
set (DEBUG_FLAGS "${DEBUG_FLAGS} -gen-interfaces")
# Generate an interface block for each routine. http://software.intel.com/en-us/blogs/2012/01/05/doctor-fortran-gets-explicit-again/
set (DEBUG_FLAGS "${DEBUG_FLAGS} -fp-stack-check")
# Generate extra code after every function call to ensure that the floating-point (FP) stack is in the expected state
set (DEBUG_FLAGS "${DEBUG_FLAGS} -fp-model strict")
# Trap uninitalized variables
set (DEBUG_FLAGS "${DEBUG_FLAGS} -check" )
# Checks at runtime ...
set (DEBUG_FLAGS "${DEBUG_FLAGS} bounds")
# ... if an array index is too small (<1) or too large!
set (DEBUG_FLAGS "${DEBUG_FLAGS},format")
# ... for the data type of an item being formatted for output.
set (DEBUG_FLAGS "${DEBUG_FLAGS},output_conversion")
# ... for the fit of data items within a designated format descriptor field.
set (DEBUG_FLAGS "${DEBUG_FLAGS},pointers")
# ... for certain disassociated or uninitialized pointers or unallocated allocatable objects.
set (DEBUG_FLAGS "${DEBUG_FLAGS},uninit")
# ... for uninitialized variables.
set (DEBUG_FLAGS "${DEBUG_FLAGS} -ftrapuv")
# ... initializes stack local variables to an unusual value to aid error detection
set (DEBUG_FLAGS "${DEBUG_FLAGS} -fpe-all=0")
# ... capture all floating-point exceptions, sets -ftz automatically
# disable due to compiler bug https://community.intel.com/t5/Intel-Fortran-Compiler/false-positive-stand-f18-and-IEEE-SELECTED-REAL-KIND/m-p/1227336
#set (DEBUG_FLAGS "${DEBUG_FLAGS} -warn")
# enables warnings ...
#set (DEBUG_FLAGS "${DEBUG_FLAGS} errors")
# ... warnings are changed to errors
#set (DEBUG_FLAGS "${DEBUG_FLAGS},stderrors")
# ... warnings about Fortran standard violations are changed to errors
set (DEBUG_FLAGS "${DEBUG_FLAGS} -debug-parameters all")
# generate debug information for parameters
# Additional options
# -heap-arrays: Should not be done for OpenMP, but set "ulimit -s unlimited" on shell. Probably it helps also to unlimit other limits
# -check: Checks at runtime, where
# arg_temp_created: will cause a lot of warnings because we create a bunch of temporary arrays (performance?)
# stack:
#------------------------------------------------------------------------------------------------
# precision settings
set (PRECISION_FLAGS "${PRECISION_FLAGS} -real-size 64")
# set precision for standard real to 32 | 64 | 128 (= 4 | 8 | 16 bytes, type pReal is always 8 bytes)

23
examples/config/Phase_Phenopowerlaw_BCC-Martensite.yaml
View File

@ -1,17 +1,12 @@
# Tasan et.al. 2015 Acta Materalia
# Tasan et.al. 2015 International Journal of Plasticity
# Diehl et.al. 2015 Meccanica
Martensite:
lattice: cI
mechanical:
elastic: {C_11: 417.4e+9, C_12: 242.4e+9, C_44: 211.1e+9, type: Hooke}
plastic:
N_sl: [12, 12]
a_sl: 2.0
dot_gamma_0_sl: 0.001
h_0_sl-sl: 563.0e+9
h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4]
n_sl: 20
type: phenopowerlaw
xi_0_sl: [405.8e+6, 456.7e+6]
xi_inf_sl: [872.9e+6, 971.2e+6]
N_sl: [12, 12]
a_sl: 2.0
dot_gamma_0_sl: 0.001
h_0_sl-sl: 563.0e+9
h_sl-sl: [1, 1.4, 1, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4, 1.4]
n_sl: 20
type: phenopowerlaw
xi_0_sl: [405.8e+6, 456.7e+6]
xi_inf_sl: [872.9e+6, 971.2e+6]

6
examples/config/phase/AISI304.yaml Normal file
View File

@ -0,0 +1,6 @@
references:
- H.M. Ledbetter
physica status solidi (a) 85(1):89-96, 1984
https://doi.org/10.1002/pssa.2210850111
lattice: cF
rho: 7937.0

4
examples/config/phase/Ag.yaml Normal file
View File

@ -0,0 +1,4 @@
references:
- https://en.wikipedia.org/wiki/Silver
lattice: cF
rho: 10490.0

7
examples/config/phase/mechanical/eigen/thermalexpansion_AISI304.yaml Normal file
View File

@ -0,0 +1,7 @@
type: thermalexpansion
references:
- R.H. Bogaard et al.
Thermochimica Acta 218:373-393, 1993
https://doi.org/10.1016/0040-6031(93)80437-F
A_11: 15.0e-6
T_ref: 300.0

8
examples/config/phase/mechanical/elastic/Hooke_AISI304.yaml Normal file
View File

@ -0,0 +1,8 @@
type: Hooke
references:
- H.M. Ledbetter
physica status solidi (a) 85(1):89-96, 1984
https://doi.org/10.1002/pssa.2210850111
C_11: 204.6e+9
C_12: 137.7e+9
C_44: 126.2e+9

22
examples/config/phase/mechanical/elastic/Hooke_Ag.yaml Normal file
View File

@ -0,0 +1,22 @@
type: Hooke
references:
- J.R. Neighbours and G.A. Alers,
Physical Review 111:707-712, 1958,
https://doi.org/10.1103/PhysRev.111.707
- Y.A. Chang and L. Himmel,
Journal of Applied Physics 37:3567-3572, 1966,
https://doi.org/10.1063/1.1708903
T_ref: 300
C_11: 122.9e+9
C_11,T: -313.5e+5
C_11,T^2: -107.3e+2
C_12: 91.55e+9
C_12,T: -164.1e+5
C_12,T^2: -681.6e+1
C_44: 42.63e+9
C_44,T: -180.5e+5
C_44,T^2: -353.8e+1

26
examples/config/phase/mechanical/elastic/Hooke_Al.yaml
View File

@ -1,8 +1,22 @@
type: Hooke
references:
- J. Vallin et al.,
Journal of Applied Physics 35(6):1825-1826, 1964,
https://doi.org/10.1063/1.1713749
C_11: 107.3e+9
C_12: 60.8e+9
C_44: 28.3e+9
- G.N. Kamm and G.A. Alers,
Journal of Applied Physics 35:327-330, 1964,
https://doi.org/10.1063/1.1713309
- D. Gerlich and E.S. Fisher,
Journal of Physics and Chemistry of Solids 30:1197-1205, 1969
https://doi.org/10.1016/0022-3697(69)90377-1
T_ref: 300
C_11: 106.1e+9
C_11,T: -359.3e+5
C_11,T^2: -152.7e+2
C_12: 57.83e+9
C_12,T: -781.6e+4
C_12,T^2: -551.3e+1
C_44: 24.31e+9
C_44,T: -142.9e+5
C_44,T^2: -404.6e+1

24
examples/config/phase/mechanical/elastic/Hooke_Fe.yaml
View File

@ -1,9 +1,19 @@
type: Hooke
references:
- J.P. Hirth and J. Lothe,
Theory of Dislocations, 1982,
John Wiley & Sons,
page 837
C_11: 242.e9
C_12: 146.5e+9
C_44: 112.e9
- D.J. Dever,
Journal of Applied Physics 43(8):3293-3301, 1972,
https://doi.org/10.1063/1.1661710
T_ref: 300
C_11: 231.7e+9
C_11,T: -47.6e+6
C_11,T^2: -54.4e+3
C_12: 135.8e+9
C_12,T: -12.9e+6
C_12,T^2: -7.3e+3
C_44: 116.8e+9
C_44,T: -19.4e+6
C_44,T^2: -2.5e+3

8
examples/config/phase/mechanical/elastic/Hooke_SAE1050-martensite.yaml Normal file
View File

@ -0,0 +1,8 @@
type: Hooke
references:
- S.A. Kim and W.L. Johnson,
Materials Science & Engineering A 452-453:633-639, 2007,
https://doi.org/10.1016/j.msea.2006.11.147
C_11: 268.1e+9
C_12: 111.2e+9
C_44: 79.06e+9

3
examples/config/phase/mechanical/plastic/dislotwin_IF-steel.yaml
View File

@ -4,7 +4,8 @@ references:
International Journal of Plasticity 134:102779, 2020,
https://doi.org/10.1016/j.ijplas.2020.102779
- K. Sedighiani et al.,
Mechanics of Materials, submitted
Mechanics of Materials, 164:104117, 2022,
https://doi.org/10.1016/j.mechmat.2021.104117
output: [rho_dip, rho_mob]
N_sl: [12, 12]
b_sl: [2.49e-10, 2.49e-10]

9
examples/config/phase/thermal/AISI304.yaml Normal file
View File

@ -0,0 +1,9 @@
references:
- B.F. Blackwell et al.
Proceedings of 34th National Heat Transfer Conference 2000
https://www.osti.gov/servlets/purl/760791
- R.H. Bogaard et al.
Thermochimica Acta 218:373-393, 1993
https://doi.org/10.1016/0040-6031(93)80437-F
C_p: 470.0
K_11: 14.34

0
examples/config/phase/thermal/Steel-0.5C.yaml → examples/config/phase/thermal/steel-0.5C.yaml
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2
python/damask/VERSION
View File

@ -1 +1 @@
v3.0.0-alpha5-244-gb57351045
v3.0.0-alpha5-358-g81a7c32a5

78
python/damask/_colormap.py
View File

@ -6,6 +6,11 @@ from pathlib import Path
from typing import Sequence, Union, TextIO
import numpy as np
try:
from numpy.typing import ArrayLike
except ImportError:
ArrayLike = Union[np.ndarray,Sequence[float]] # type: ignore
import scipy.interpolate as interp
import matplotlib as mpl
if os.name == 'posix' and 'DISPLAY' not in os.environ:
mpl.use('Agg')
@ -41,7 +46,7 @@ class Colormap(mpl.colors.ListedColormap):
https://doi.org/10.1016/j.ijplas.2012.09.012
Matplotlib colormaps overview
https://matplotlib.org/tutorials/colors/colormaps.html
https://matplotlib.org/stable/tutorials/colors/colormaps.html
"""
@ -77,8 +82,8 @@ class Colormap(mpl.colors.ListedColormap):
@staticmethod
def from_range(low: Sequence[float],
high: Sequence[float],
def from_range(low: ArrayLike,
high: ArrayLike,
name: str = 'DAMASK colormap',
N: int = 256,
model: str = 'rgb') -> 'Colormap':
@ -128,7 +133,7 @@ class Colormap(mpl.colors.ListedColormap):
if model.lower() not in toMsh:
raise ValueError(f'Invalid color model: {model}.')
low_high = np.vstack((low,high))
low_high = np.vstack((low,high)).astype(float)
out_of_bounds = np.bool_(False)
if model.lower() == 'rgb':
@ -141,7 +146,7 @@ class Colormap(mpl.colors.ListedColormap):
out_of_bounds = np.any(low_high[:,0]<0)
if out_of_bounds:
raise ValueError(f'{model.upper()} colors {low} | {high} are out of bounds.')
raise ValueError(f'{model.upper()} colors {low_high[0]} | {low_high[1]} are out of bounds.')
low_,high_ = map(toMsh[model.lower()],low_high)
msh = map(functools.partial(Colormap._interpolate_msh,low=low_,high=high_),np.linspace(0,1,N))
@ -191,19 +196,50 @@ class Colormap(mpl.colors.ListedColormap):
return Colormap.from_range(definition['low'],definition['high'],name,N)
def at(self,
fraction : Union[float,Sequence[float]]) -> np.ndarray:
"""
Interpolate color at fraction.
Parameters
----------
fraction : float or sequence of float
Fractional coordinate(s) to evaluate Colormap at.
Returns
-------
color : np.ndarray, shape(...,4)
RGBA values of interpolated color(s).
Examples
--------
>>> import damask
>>> cmap = damask.Colormap.from_predefined('gray')
>>> cmap.at(0.5)
array([0.5, 0.5, 0.5, 1. ])
>>> 'rgb({},{},{})'.format(*cmap.at(0.5))
'rgb(0.5,0.5,0.5)'
"""
return interp.interp1d(np.linspace(0,1,self.N),
self.colors,
axis=0,
assume_sorted=True)(fraction)
def shade(self,
field: np.ndarray,
bounds: Sequence[float] = None,
bounds: ArrayLike = None,
gap: float = None) -> Image:
"""
Generate PIL image of 2D field using colormap.
Parameters
----------
field : numpy.array, shape (:,:)
field : numpy.ndarray, shape (:,:)
Data to be shaded.
bounds : sequence of float, len (2), optional
Value range (low,high) spanned by colormap.
Value range (left,right) spanned by colormap.
gap : field.dtype, optional
Transparent value. NaN will always be rendered transparent.
@ -213,21 +249,20 @@ class Colormap(mpl.colors.ListedColormap):
RGBA image of shaded data.
"""
N = len(self.colors)
mask = np.logical_not(np.isnan(field) if gap is None else \
np.logical_or (np.isnan(field), field == gap)) # mask NaN (and gap if present)
lo,hi = (field[mask].min(),field[mask].max()) if bounds is None else \
(min(bounds[:2]),max(bounds[:2]))
l,r = (field[mask].min(),field[mask].max()) if bounds is None else \
np.array(bounds,float)[:2]
delta,avg = hi-lo,0.5*(hi+lo)
delta,avg = r-l,0.5*abs(r+l)
if delta * 1e8 <= avg: # delta is similar to numerical noise
hi,lo = hi+0.5*avg,lo-0.5*avg # extend range to have actual data centered within
if abs(delta) * 1e8 <= avg: # delta is similar to numerical noise
l,r = l-0.5*avg*np.sign(delta),r+0.5*avg*np.sign(delta), # extend range to have actual data centered within
return Image.fromarray(
(np.dstack((
self.colors[(np.round(np.clip((field-lo)/(hi-lo),0.0,1.0)*(N-1))).astype(np.uint16),:3],
self.colors[(np.round(np.clip((field-l)/delta,0.0,1.0)*(self.N-1))).astype(np.uint16),:3],
mask.astype(float)
)
)*255
@ -343,7 +378,7 @@ class Colormap(mpl.colors.ListedColormap):
# ToDo: test in GOM
GOM_str = '1 1 {name} 9 {name} '.format(name=self.name.replace(" ","_")) \
+ '0 1 0 3 0 0 -1 9 \\ 0 0 0 255 255 255 0 0 255 ' \
+ f'30 NO_UNIT 1 1 64 64 64 255 1 0 0 0 0 0 0 3 0 {len(self.colors)}' \
+ f'30 NO_UNIT 1 1 64 64 64 255 1 0 0 0 0 0 0 3 0 {self.N}' \
+ ' '.join([f' 0 {c[0]} {c[1]} {c[2]} 255 1' for c in reversed((self.colors*255).astype(int))]) \
+ '\n'
@ -581,7 +616,7 @@ class Colormap(mpl.colors.ListedColormap):
@staticmethod
def _lab2xyz(lab: np.ndarray, ref_white: np.ndarray = None) -> np.ndarray:
def _lab2xyz(lab: np.ndarray, ref_white: np.ndarray = _REF_WHITE) -> np.ndarray:
"""
CIE Lab to CIE Xyz.
@ -589,6 +624,8 @@ class Colormap(mpl.colors.ListedColormap):
----------
lab : numpy.ndarray, shape (3)
CIE lab values.
ref_white : numpy.ndarray, shape (3)
Reference white, default value is the standard 2° observer for D65.
Returns
-------
@ -607,10 +644,10 @@ class Colormap(mpl.colors.ListedColormap):
f_x**3. if f_x**3. > _EPS else (116.*f_x-16.)/_KAPPA,
((lab[0]+16.)/116.)**3 if lab[0]>_KAPPA*_EPS else lab[0]/_KAPPA,
f_z**3. if f_z**3. > _EPS else (116.*f_z-16.)/_KAPPA
])*(ref_white if ref_white is not None else _REF_WHITE)
])*ref_white
@staticmethod
def _xyz2lab(xyz: np.ndarray, ref_white: np.ndarray = None) -> np.ndarray:
def _xyz2lab(xyz: np.ndarray, ref_white: np.ndarray = _REF_WHITE) -> np.ndarray:
"""
CIE Xyz to CIE Lab.
@ -618,6 +655,8 @@ class Colormap(mpl.colors.ListedColormap):
----------
xyz : numpy.ndarray, shape (3)
CIE Xyz values.
ref_white : numpy.ndarray, shape (3)
Reference white, default value is the standard 2° observer for D65.
Returns
-------
@ -629,7 +668,6 @@ class Colormap(mpl.colors.ListedColormap):
http://www.brucelindbloom.com/index.html?Eqn_Lab_to_XYZ.html
"""
ref_white = ref_white if ref_white is not None else _REF_WHITE
f = np.where(xyz/ref_white > _EPS,(xyz/ref_white)**(1./3.),(_KAPPA*xyz/ref_white+16.)/116.)
return np.array([

18
python/damask/_crystal.py
View File

@ -1,3 +1,5 @@
from typing import Union, Dict, List, Tuple
import numpy as np
from . import util
@ -177,7 +179,7 @@ class Crystal():
@property
def standard_triangle(self):
def standard_triangle(self) -> Union[Dict[str, np.ndarray], None]:
"""
Corners of the standard triangle.
@ -238,7 +240,7 @@ class Crystal():
[-1., 0., 0.],
[ 0., 1., 0.] ]),
}}
return _basis.get(self.family,None)
return _basis.get(self.family, None)
@property
@ -256,7 +258,7 @@ class Crystal():
@property
def basis_real(self):
def basis_real(self) -> np.ndarray:
"""
Return orthogonal real space crystal basis.
@ -280,7 +282,7 @@ class Crystal():
@property
def basis_reciprocal(self):
def basis_reciprocal(self) -> np.ndarray:
"""Return reciprocal (dual) crystal basis."""
return np.linalg.inv(self.basis_real.T)
@ -312,7 +314,7 @@ class Crystal():
+ _lattice_points.get(self.lattice if self.lattice == 'hP' else \
self.lattice[-1],None),dtype=float)
def to_lattice(self,*,direction=None,plane=None):
def to_lattice(self, *, direction: np.ndarray = None, plane: np.ndarray = None) -> np.ndarray:
"""
Calculate lattice vector corresponding to crystal frame direction or plane normal.
@ -336,7 +338,7 @@ class Crystal():
return np.einsum('il,...l',basis,axis)
def to_frame(self,*,uvw=None,hkl=None):
def to_frame(self, *, uvw: np.ndarray = None, hkl: np.ndarray = None) -> np.ndarray:
"""
Calculate crystal frame vector along lattice direction [uvw] or plane normal (hkl).
@ -359,7 +361,7 @@ class Crystal():
return np.einsum('il,...l',basis,axis)
def kinematics(self,mode):
def kinematics(self, mode: str) -> Dict[str, List[np.ndarray]]:
"""
Return crystal kinematics systems.
@ -551,7 +553,7 @@ class Crystal():
'plane': [m[:,3:6] for m in master]}
def relation_operations(self,model):
def relation_operations(self, model: str) -> Tuple[str, Rotation]:
"""
Crystallographic orientation relationships for phase transformations.

4
python/damask/_grid.py
View File

@ -197,7 +197,7 @@ class Grid:
Grid-based geometry from file.
"""
warnings.warn('Support for ASCII-based geom format will be removed in DAMASK 3.1.0', DeprecationWarning,2)
warnings.warn('Support for ASCII-based geom format will be removed in DAMASK 3.0.0', DeprecationWarning,2)
try:
f = open(fname)
except TypeError:
@ -629,7 +629,7 @@ class Grid:
Compress geometry with 'x of y' and 'a to b'.
"""
warnings.warn('Support for ASCII-based geom format will be removed in DAMASK 3.1.0', DeprecationWarning,2)
warnings.warn('Support for ASCII-based geom format will be removed in DAMASK 3.0.0', DeprecationWarning,2)
header = [f'{len(self.comments)+4} header'] + self.comments \
+ ['grid a {} b {} c {}'.format(*self.cells),
'size x {} y {} z {}'.format(*self.size),

2
python/damask/_orientation.py
View File

@ -13,7 +13,7 @@ _parameter_doc = \
"""
family : {'triclinic', 'monoclinic', 'orthorhombic', 'tetragonal', 'hexagonal', 'cubic'}, optional.
Name of the crystal family.
Will be infered if 'lattice' is given.
Family will be inferred if 'lattice' is given.
lattice : {'aP', 'mP', 'mS', 'oP', 'oS', 'oI', 'oF', 'tP', 'tI', 'hP', 'cP', 'cI', 'cF'}, optional.
Name of the Bravais lattice in Pearson notation.
a : float, optional

173
python/damask/_result.py
View File

@ -4,6 +4,7 @@ import fnmatch
import os
import copy
import datetime
import warnings
import xml.etree.ElementTree as ET
import xml.dom.minidom
from pathlib import Path
@ -27,6 +28,20 @@ h5py3 = h5py.__version__[0] == '3'
chunk_size = 1024**2//8 # for compression in HDF5
def _view_transition(what,datasets,increments,times,phases,homogenizations,fields):
if (datasets is not None and what is None) or (what is not None and datasets is None):
raise ValueError('"what" and "datasets" need to be used as a pair')
if datasets is not None or what is not None:
warnings.warn('Arguments "what" and "datasets" will be removed in DAMASK v3.0.0-alpha7', DeprecationWarning,2)
return what,datasets
if sum(1 for _ in filter(None.__ne__, [increments,times,phases,homogenizations,fields])) > 1:
raise ValueError('Only one out of "increments", "times", "phases", "homogenizations", and "fields" can be used')
else:
if increments is not None: return "increments", increments
if times is not None: return "times", times
if phases is not None: return "phases", phases
if homogenizations is not None: return "homogenizations", homogenizations
if fields is not None: return "fields", fields
def _read(dataset):
"""Read a dataset and its metadata into a numpy.ndarray."""
@ -79,7 +94,7 @@ class Result:
>>> r.add_Cauchy()
>>> r.add_equivalent_Mises('sigma')
>>> r.export_VTK()
>>> r_last = r.view('increments',-1)
>>> r_last = r.view(increments=-1)
>>> sigma_vM_last = r_last.get('sigma_vM')
"""
@ -141,7 +156,7 @@ class Result:
self.fname = Path(fname).absolute()
self._allow_modification = False
self._protected = True
def __copy__(self):
@ -155,10 +170,10 @@ class Result:
"""Show summary of file content."""
visible_increments = self.visible['increments']
first = self.view('increments',visible_increments[0:1]).list_data()
first = self.view(increments=visible_increments[0:1]).list_data()
last = '' if len(visible_increments) < 2 else \
self.view('increments',visible_increments[-1:]).list_data()
self.view(increments=visible_increments[-1:]).list_data()
in_between = '' if len(visible_increments) < 3 else \
''.join([f'\n{inc}\n ...\n' for inc in visible_increments[1:-1]])
@ -231,36 +246,6 @@ class Result:
return dup
def modification_enable(self):
"""
Allow modification of existing data.
Returns
-------
modified_view : damask.Result
View without write-protection of existing data.
"""
print(util.warn('Warning: Modification of existing datasets allowed!'))
dup = self.copy()
dup._allow_modification = True
return dup
def modification_disable(self):
"""
Prevent modification of existing data (default case).
Returns
-------
modified_view : damask.Result
View with write-protection of existing data.
"""
dup = self.copy()
dup._allow_modification = False
return dup
def increments_in_range(self,start,end):
"""
Get all increments within a given range.
@ -285,7 +270,6 @@ class Result:
selected.append(self.increments[i])
return selected
def times_in_range(self,start,end):
"""
Get all increments within a given time range.
@ -310,17 +294,38 @@ class Result:
return selected
def view(self,what,datasets):
def view(self,what=None,datasets=None,*,
increments=None,
times=None,
phases=None,
homogenizations=None,
fields=None,
protected=None):
"""
Set view.
Wildcard matching with '?' and '*' is supported.
True is equivalent to '*', False is equivalent to [].
Parameters
----------
what : {'increments', 'times', 'phases', 'homogenizations', 'fields'}
Attribute to change.
Attribute to change. DEPRECATED.
datasets : (list of) int (for increments), (list of) float (for times), (list of) str, or bool
Name of datasets; supports '?' and '*' wildcards.
Name of datasets; supports '?' and '*' wildcards. DEPRECATED.
True is equivalent to '*', False is equivalent to [].
increments: (list of) int, (list of) str, or bool, optional.
Number(s) of increments to select.
times: (list of) float, (list of) str, or bool, optional.
Simulation time(s) of increments to select.
phases: (list of) str, or bool, optional.
Name(s) of phases to select.
homogenizations: (list of) str, or bool, optional.
Name(s) of homogenizations to select.
fields: (list of) str, or bool, optional.
Name(s) of fields to select.
protected: bool, optional.
Protection status of existing data.
Returns
-------
@ -333,29 +338,61 @@ class Result:
>>> import damask
>>> r = damask.Result('my_file.hdf5')
>>> r_first = r.view('increment',0)
>>> r_first = r.view(increment=0)
Get a view that shows all results between simulation times of 10 to 40:
>>> import damask
>>> r = damask.Result('my_file.hdf5')
>>> r_t10to40 = r.view('times',r.times_in_range(10.0,40.0))
>>> r_t10to40 = r.view(times=r.times_in_range(10.0,40.0))
"""
return self._manage_view('set',what,datasets)
v = _view_transition(what,datasets,increments,times,phases,homogenizations,fields)
if protected is not None:
if v is None:
dup = self.copy()
else:
what_,datasets_ = v
dup = self._manage_view('set',what_,datasets_)
if not protected:
print(util.warn('Warning: Modification of existing datasets allowed!'))
dup._protected = protected
else:
what_,datasets_ = v
dup = self._manage_view('set',what_,datasets_)
return dup
def view_more(self,what,datasets):
def view_more(self,what=None,datasets=None,*,
increments=None,
times=None,
phases=None,
homogenizations=None,
fields=None):
"""
Add to view.
Wildcard matching with '?' and '*' is supported.
True is equivalent to '*', False is equivalent to [].
Parameters
----------
what : {'increments', 'times', 'phases', 'homogenizations', 'fields'}
Attribute to change.
Attribute to change. DEPRECATED.
datasets : (list of) int (for increments), (list of) float (for times), (list of) str, or bool
Name of datasets; supports '?' and '*' wildcards.
Name of datasets; supports '?' and '*' wildcards. DEPRECATED.
True is equivalent to '*', False is equivalent to [].
increments: (list of) int, (list of) str, or bool, optional.
Number(s) of increments to select.
times: (list of) float, (list of) str, or bool, optional.
Simulation time(s) of increments to select.
phases: (list of) str, or bool, optional.
Name(s) of phases to select.
homogenizations: (list of) str, or bool, optional.
Name(s) of homogenizations to select.
fields: (list of) str, or bool, optional.
Name(s) of fields to select.
Returns
-------
@ -367,25 +404,44 @@ class Result:
Get a view that shows only results from first and last increment:
>>> import damask
>>> r_empty = damask.Result('my_file.hdf5').view('increments',False)
>>> r_first = r_empty.view_more('increments',0)
>>> r_first_and_last = r.first.view_more('increments',-1)
>>> r_empty = damask.Result('my_file.hdf5').view(increments=False)
>>> r_first = r_empty.view_more(increments=0)
>>> r_first_and_last = r.first.view_more(increments=-1)
"""
return self._manage_view('add',what,datasets)
what_, datasets_ = _view_transition(what,datasets,increments,times,phases,homogenizations,fields)
return self._manage_view('add',what_,datasets_)
def view_less(self,what,datasets):
def view_less(self,what=None,datasets=None,*,
increments=None,
times=None,
phases=None,
homogenizations=None,
fields=None):
"""
Remove from view.
Wildcard matching with '?' and '*' is supported.
True is equivalent to '*', False is equivalent to [].
Parameters
----------
what : {'increments', 'times', 'phases', 'homogenizations', 'fields'}
Attribute to change.
Attribute to change. DEPRECATED.
datasets : (list of) int (for increments), (list of) float (for times), (list of) str, or bool
Name of datasets; supports '?' and '*' wildcards.
Name of datasets; supports '?' and '*' wildcards. DEPRECATED.
True is equivalent to '*', False is equivalent to [].
increments: (list of) int, (list of) str, or bool, optional.
Number(s) of increments to select.
times: (list of) float, (list of) str, or bool, optional.
Simulation time(s) of increments to select.
phases: (list of) str, or bool, optional.
Name(s) of phases to select.
homogenizations: (list of) str, or bool, optional.
Name(s) of homogenizations to select.
fields: (list of) str, or bool, optional.
Name(s) of fields to select.
Returns
-------
@ -398,10 +454,11 @@ class Result:
>>> import damask
>>> r_all = damask.Result('my_file.hdf5')
>>> r_deformed = r_all.view_less('increments',0)
>>> r_deformed = r_all.view_less(increments=0)
"""
return self._manage_view('del',what,datasets)
what_, datasets_ = _view_transition(what,datasets,increments,times,phases,homogenizations,fields)
return self._manage_view('del',what_,datasets_)
def rename(self,name_src,name_dst):
@ -424,11 +481,11 @@ class Result:
>>> import damask
>>> r = damask.Result('my_file.hdf5')
>>> r_unprotected = r.modification_enable()
>>> r_unprotected = r.view(protected=False)
>>> r_unprotected.rename('F','def_grad')
"""
if not self._allow_modification:
if self._protected:
raise PermissionError('Renaming datasets not permitted')
with h5py.File(self.fname,'a') as f:
@ -463,11 +520,11 @@ class Result:
>>> import damask
>>> r = damask.Result('my_file.hdf5')
>>> r_unprotected = r.modification_enable()
>>> r_unprotected = r.view(protected=False)
>>> r_unprotected.remove('F')
"""
if not self._allow_modification:
if self._protected:
raise PermissionError('Removing datasets not permitted')
with h5py.File(self.fname,'a') as f:
@ -1358,7 +1415,7 @@ class Result:
lock.acquire()
with h5py.File(self.fname, 'a') as f:
try:
if self._allow_modification and '/'.join([group,result['label']]) in f:
if not self._protected and '/'.join([group,result['label']]) in f:
dataset = f['/'.join([group,result['label']])]
dataset[...] = result['data']
dataset.attrs['overwritten'] = True

68
python/damask/util.py
View File

@ -22,7 +22,7 @@ __all__=[
'natural_sort',
'show_progress',
'scale_to_coprime',
'project_stereographic',
'project_equal_angle', 'project_equal_area',
'hybrid_IA',
'execution_stamp',
'shapeshifter', 'shapeblender',
@ -267,13 +267,13 @@ def scale_to_coprime(v):
return m
def project_stereographic(vector,direction='z',normalize=True,keepdims=False):
def project_equal_angle(vector,direction='z',normalize=True,keepdims=False):
"""
Apply stereographic projection to vector.
Apply equal-angle projection to vector.
Parameters
----------
vector : numpy.ndarray of shape (...,3)
vector : numpy.ndarray, shape (...,3)
Vector coordinates to be projected.
direction : str
Projection direction 'x', 'y', or 'z'.
@ -281,32 +281,74 @@ def project_stereographic(vector,direction='z',normalize=True,keepdims=False):
normalize : bool
Ensure unit length of input vector. Defaults to True.
keepdims : bool
Maintain three-dimensional output coordinates.
Default two-dimensional output uses right-handed frame spanned by
Maintain three-dimensional output coordinates. Defaults to False.
Two-dimensional output uses right-handed frame spanned by
the next and next-next axis relative to the projection direction,
e.g. x-y when projecting along z and z-x when projecting along y.
Returns
-------
coordinates : numpy.ndarray of shape (...,2 | 3)
coordinates : numpy.ndarray, shape (...,2 | 3)
Projected coordinates.
Examples
--------
>>> import damask
>>> import numpy as np
>>> project_stereographic(np.ones(3))
>>> project_equal_angle(np.ones(3))
[0.3660254, 0.3660254]
>>> project_stereographic(np.ones(3),direction='x',normalize=False,keepdims=True)
>>> project_equal_angle(np.ones(3),direction='x',normalize=False,keepdims=True)
[0, 0.5, 0.5]
>>> project_stereographic([0,1,1],direction='y',normalize=True,keepdims=False)
>>> project_equal_angle([0,1,1],direction='y',normalize=True,keepdims=False)
[0.41421356, 0]
"""
shift = 'zyx'.index(direction)
v_ = np.roll(vector/np.linalg.norm(vector,axis=-1,keepdims=True) if normalize else vector,
shift,axis=-1)
return np.roll(np.block([v_[...,:2]/(1+np.abs(v_[...,2:3])),np.zeros_like(v_[...,2:3])]),
v = np.roll(vector/np.linalg.norm(vector,axis=-1,keepdims=True) if normalize else vector,
shift,axis=-1)
return np.roll(np.block([v[...,:2]/(1.0+np.abs(v[...,2:3])),np.zeros_like(v[...,2:3])]),
-shift if keepdims else 0,axis=-1)[...,:3 if keepdims else 2]
def project_equal_area(vector,direction='z',normalize=True,keepdims=False):
"""
Apply equal-area projection to vector.
Parameters
----------
vector : numpy.ndarray, shape (...,3)
Vector coordinates to be projected.
direction : str
Projection direction 'x', 'y', or 'z'.
Defaults to 'z'.
normalize : bool
Ensure unit length of input vector. Defaults to True.
keepdims : bool
Maintain three-dimensional output coordinates. Defaults to False.
Two-dimensional output uses right-handed frame spanned by
the next and next-next axis relative to the projection direction,
e.g. x-y when projecting along z and z-x when projecting along y.
Returns
-------
coordinates : numpy.ndarray, shape (...,2 | 3)
Projected coordinates.
Examples
--------
>>> import damask
>>> import numpy as np
>>> project_equal_area(np.ones(3))
[0.45970084, 0.45970084]
>>> project_equal_area(np.ones(3),direction='x',normalize=False,keepdims=True)
[0.0, 0.70710678, 0.70710678]
>>> project_equal_area([0,1,1],direction='y',normalize=True,keepdims=False)
[0.5411961, 0.0]
"""
shift = 'zyx'.index(direction)
v = np.roll(vector/np.linalg.norm(vector,axis=-1,keepdims=True) if normalize else vector,
shift,axis=-1)
return np.roll(np.block([v[...,:2]/np.sqrt(1.0+np.abs(v[...,2:3])),np.zeros_like(v[...,2:3])]),
-shift if keepdims else 0,axis=-1)[...,:3 if keepdims else 2]

10
python/tests/test_Colormap.py
View File

@ -139,6 +139,16 @@ class TestColormap:
c += c
assert (np.allclose(c.colors[:len(c.colors)//2],c.colors[len(c.colors)//2:]))
@pytest.mark.parametrize('N,cmap,at,result',[
(8,'gray',0.5,[0.5,0.5,0.5]),
(17,'gray',0.5,[0.5,0.5,0.5]),
(17,'gray',[0.5,0.75],[[0.5,0.5,0.5],[0.75,0.75,0.75]]),
])
def test_at_value(self, N, cmap, at, result):
assert np.allclose(Colormap.from_predefined(cmap,N=N).at(at)[...,:3],
result,
rtol=0.005)
@pytest.mark.parametrize('bounds',[None,[2,10]])
def test_shade(self,ref_path,update,bounds):
data = np.add(*np.indices((10, 11)))

32
python/tests/test_Result.py
View File

@ -25,7 +25,7 @@ def default(tmp_path,ref_path):
fname = '12grains6x7x8_tensionY.hdf5'
shutil.copy(ref_path/fname,tmp_path)
f = Result(tmp_path/fname)
return f.view('times',20.0)
return f.view(times=20.0)
@pytest.fixture
def single_phase(tmp_path,ref_path):
@ -58,14 +58,14 @@ class TestResult:
def test_view_all(self,default):
a = default.view('increments',True).get('F')
a = default.view(increments=True).get('F')
assert dict_equal(a,default.view('increments','*').get('F'))
assert dict_equal(a,default.view('increments',default.increments_in_range(0,np.iinfo(int).max)).get('F'))
assert dict_equal(a,default.view(increments='*').get('F'))
assert dict_equal(a,default.view(increments=default.increments_in_range(0,np.iinfo(int).max)).get('F'))
assert dict_equal(a,default.view('times',True).get('F'))
assert dict_equal(a,default.view('times','*').get('F'))
assert dict_equal(a,default.view('times',default.times_in_range(0.0,np.inf)).get('F'))
assert dict_equal(a,default.view(times=True).get('F'))
assert dict_equal(a,default.view(times='*').get('F'))
assert dict_equal(a,default.view(times=default.times_in_range(0.0,np.inf)).get('F'))
@pytest.mark.parametrize('what',['increments','times','phases','fields']) # ToDo: discuss homogenizations
def test_view_none(self,default,what):
@ -314,7 +314,7 @@ class TestResult:
@pytest.mark.parametrize('overwrite',['off','on'])
def test_add_overwrite(self,default,overwrite):
last = default.view('increments',-1)
last = default.view(increments=-1)
last.add_stress_Cauchy()
@ -322,9 +322,9 @@ class TestResult:
created_first = datetime.strptime(created_first,'%Y-%m-%d %H:%M:%S%z')
if overwrite == 'on':
last = last.modification_enable()
last = last.view(protected=False)
else:
last = last.modification_disable()
last = last.view(protected=True)
time.sleep(2.)
try:
@ -344,10 +344,10 @@ class TestResult:
def test_rename(self,default,allowed):
if allowed == 'on':
F = default.place('F')
default = default.modification_enable()
default = default.view(protected=False)
default.rename('F','new_name')
assert np.all(F == default.place('new_name'))
default = default.modification_disable()
default = default.view(protected=True)
with pytest.raises(PermissionError):
default.rename('P','another_new_name')
@ -355,7 +355,7 @@ class TestResult:
@pytest.mark.parametrize('allowed',['off','on'])
def test_remove(self,default,allowed):
if allowed == 'on':
unsafe = default.modification_enable()
unsafe = default.view(protected=False)
unsafe.remove('F')
assert unsafe.get('F') is None
else:
@ -377,7 +377,7 @@ class TestResult:
@pytest.mark.parametrize('inc',[4,0],ids=range(2))
@pytest.mark.xfail(int(vtk.vtkVersion.GetVTKVersion().split('.')[0])<9, reason='missing "Direction" attribute')
def test_vtk(self,request,tmp_path,ref_path,update,patch_execution_stamp,patch_datetime_now,output,fname,inc):
result = Result(ref_path/fname).view('increments',inc)
result = Result(ref_path/fname).view(increments=inc)
os.chdir(tmp_path)
result.export_VTK(output,parallel=False)
fname = fname.split('.')[0]+f'_inc{(inc if type(inc) == int else inc[0]):0>2}.vti'
@ -400,7 +400,7 @@ class TestResult:
result.export_VTK(output,mode)
def test_marc_coordinates(self,ref_path):
result = Result(ref_path/'check_compile_job1.hdf5').view('increments',-1)
result = Result(ref_path/'check_compile_job1.hdf5').view(increments=-1)
c_n = result.coordinates0_node + result.get('u_n')
c_p = result.coordinates0_point + result.get('u_p')
assert len(c_n) > len(c_p)
@ -440,7 +440,7 @@ class TestResult:
dim_xdmf = reader_xdmf.GetOutput().GetDimensions()
bounds_xdmf = reader_xdmf.GetOutput().GetBounds()
single_phase.view('increments',0).export_VTK(parallel=False)
single_phase.view(increments=0).export_VTK(parallel=False)
fname = os.path.splitext(os.path.basename(single_phase.fname))[0]+'_inc00.vti'
reader_vti = vtk.vtkXMLImageDataReader()
reader_vti.SetFileName(fname)

6
python/tests/test_VTK.py
View File

@ -20,7 +20,7 @@ def default():
"""Simple VTK."""
cells = np.array([5,6,7],int)
size = np.array([.6,1.,.5])
return VTK.from_rectilinear_grid(cells,size)
return VTK.from_image_data(cells,size)
class TestVTK:
@ -116,7 +116,7 @@ class TestVTK:
def test_add_extension(self,tmp_path,default):
default.save(tmp_path/'default.txt',parallel=False)
assert os.path.isfile(tmp_path/'default.txt.vtr')
assert os.path.isfile(tmp_path/'default.txt.vti')
def test_invalid_get(self,default):
@ -160,7 +160,7 @@ class TestVTK:
def test_comments(self,tmp_path,default):
default.add_comments(['this is a comment'])
default.save(tmp_path/'with_comments',parallel=False)
new = VTK.load(tmp_path/'with_comments.vtr')
new = VTK.load(tmp_path/'with_comments.vti')
assert new.get_comments() == ['this is a comment']
@pytest.mark.xfail(int(vtk.vtkVersion.GetVTKVersion().split('.')[0])<8, reason='missing METADATA')

19
python/tests/test_util.py
View File

@ -59,9 +59,22 @@ class TestUtil:
([1,1,0],'x',False,False,[0.5,0]),
([1,1,1],'y',True, True, [0.3660254, 0,0.3660254]),
])
def test_project_stereographic(self,point,direction,normalize,keepdims,answer):
assert np.allclose(util.project_stereographic(np.array(point),direction=direction,
normalize=normalize,keepdims=keepdims),answer)
def test_project_equal_angle(self,point,direction,normalize,keepdims,answer):
assert np.allclose(util.project_equal_angle(np.array(point),direction=direction,
normalize=normalize,keepdims=keepdims),answer)
@pytest.mark.parametrize('point,direction,normalize,keepdims,answer',
[
([1,0,0],'z',False,True, [1,0,0]),
([1,0,0],'z',True, False,[1,0]),
([0,1,1],'z',False,True, [0,0.70710678,0]),
([0,1,1],'y',True, False,[0.5411961,0]),
([1,1,0],'x',False,False,[0.70710678,0]),
([1,1,1],'y',True, True, [0.45970084,0,0.45970084]),
])
def test_project_equal_area(self,point,direction,normalize,keepdims,answer):
assert np.allclose(util.project_equal_area(np.array(point),direction=direction,
normalize=normalize,keepdims=keepdims),answer)
@pytest.mark.parametrize('fro,to,mode,answer',
[

14
src/LAPACK_interface.f90
View File

@ -6,7 +6,7 @@
module LAPACK_interface
interface
subroutine dgeev(jobvl,jobvr,n,a,lda,wr,wi,vl,ldvl,vr,ldvr,work,lwork,info)
pure subroutine dgeev(jobvl,jobvr,n,a,lda,wr,wi,vl,ldvl,vr,ldvr,work,lwork,info)
use prec
character, intent(in) :: jobvl,jobvr
integer, intent(in) :: n,lda,ldvl,ldvr,lwork
@ -18,16 +18,16 @@ module LAPACK_interface
integer, intent(out) :: info
end subroutine dgeev
subroutine dgesv(n,nrhs,a,lda,ipiv,b,ldb,info)
pure subroutine dgesv(n,nrhs,a,lda,ipiv,b,ldb,info)
use prec
integer, intent(in) :: n,nrhs,lda,ldb
real(pReal), intent(inout), dimension(lda,n) :: a
integer, intent(out), dimension(n) :: ipiv
real(pReal), intent(out), dimension(ldb,nrhs) :: b
real(pReal), intent(inout), dimension(ldb,nrhs) :: b
integer, intent(out) :: info
end subroutine dgesv
subroutine dgetrf(m,n,a,lda,ipiv,info)
pure subroutine dgetrf(m,n,a,lda,ipiv,info)
use prec
integer, intent(in) :: m,n,lda
real(pReal), intent(inout), dimension(lda,n) :: a
@ -35,16 +35,16 @@ module LAPACK_interface
integer, intent(out) :: info
end subroutine dgetrf
subroutine dgetri(n,a,lda,ipiv,work,lwork,info)
pure subroutine dgetri(n,a,lda,ipiv,work,lwork,info)
use prec
integer, intent(in) :: n,lda,lwork
real(pReal), intent(inout), dimension(lda,n) :: a
integer, intent(out), dimension(n) :: ipiv
integer, intent(in), dimension(n) :: ipiv
real(pReal), intent(out), dimension(max(1,lwork)) :: work
integer, intent(out) :: info
end subroutine dgetri
subroutine dsyev(jobz,uplo,n,a,lda,w,work,lwork,info)
pure subroutine dsyev(jobz,uplo,n,a,lda,w,work,lwork,info)
use prec
character, intent(in) :: jobz,uplo
integer, intent(in) :: n,lda,lwork

5
src/constants.f90
View File

@ -9,7 +9,8 @@ module constants
public
real(pReal), parameter :: &
T_ROOM = 300.0_pReal, & !< Room temperature in K
K_B = 1.38e-23_pReal !< Boltzmann constant in J/Kelvin
T_ROOM = 300.0_pReal, & !< Room temperature in K. ToDo: IUPAC: 298.15
K_B = 1.38e-23_pReal, & !< Boltzmann constant in J/Kelvin
N_A = 6.02214076e23_pReal !< Avogadro constant in 1/mol
end module constants

9
src/grid/DAMASK_grid.f90
View File

@ -43,6 +43,15 @@ program DAMASK_grid
logical :: estimate_rate !< follow trajectory of former loadcase
end type tLoadCase
!--------------------------------------------------------------------------------------------------
! field labels information
enum, bind(c); enumerator :: &
FIELD_UNDEFINED_ID, &
FIELD_MECH_ID, &
FIELD_THERMAL_ID, &
FIELD_DAMAGE_ID
end enum
integer(kind(FIELD_UNDEFINED_ID)), allocatable :: ID(:)
!--------------------------------------------------------------------------------------------------

5
src/grid/grid_damage_spectral.f90
View File

@ -167,7 +167,7 @@ function grid_damage_spectral_solution(Delta_t) result(solution)
integer :: i, j, k, ce
type(tSolutionState) :: solution
PetscInt :: devNull
PetscReal :: phi_min, phi_max, stagNorm, solnNorm
PetscReal :: phi_min, phi_max, stagNorm
PetscErrorCode :: ierr
SNESConvergedReason :: reason
@ -189,9 +189,8 @@ function grid_damage_spectral_solution(Delta_t) result(solution)
solution%iterationsNeeded = totalIter
end if
stagNorm = maxval(abs(phi_current - phi_stagInc))
solnNorm = maxval(abs(phi_current))
call MPI_Allreduce(MPI_IN_PLACE,stagNorm,1,MPI_DOUBLE,MPI_MAX,MPI_COMM_WORLD,ierr)
solution%stagConverged = stagNorm < max(num%eps_damage_atol, num%eps_damage_rtol*solnNorm)
solution%stagConverged = stagNorm < max(num%eps_damage_atol, num%eps_damage_rtol*maxval(phi_current))
call MPI_Allreduce(MPI_IN_PLACE,solution%stagConverged,1,MPI_LOGICAL,MPI_LAND,MPI_COMM_WORLD,ierr)
phi_stagInc = phi_current

5
src/grid/grid_thermal_spectral.f90
View File

@ -162,7 +162,7 @@ function grid_thermal_spectral_solution(Delta_t) result(solution)
integer :: i, j, k, ce
type(tSolutionState) :: solution
PetscInt :: devNull
PetscReal :: T_min, T_max, stagNorm, solnNorm
PetscReal :: T_min, T_max, stagNorm
PetscErrorCode :: ierr
SNESConvergedReason :: reason
@ -184,9 +184,8 @@ function grid_thermal_spectral_solution(Delta_t) result(solution)
solution%iterationsNeeded = totalIter
end if
stagNorm = maxval(abs(T_current - T_stagInc))
solnNorm = maxval(abs(T_current))
call MPI_Allreduce(MPI_IN_PLACE,stagNorm,1,MPI_DOUBLE,MPI_MAX,MPI_COMM_WORLD,ierr)
solution%stagConverged = stagNorm < max(num%eps_thermal_atol, num%eps_thermal_rtol*solnNorm)
solution%stagConverged = stagNorm < max(num%eps_thermal_atol, num%eps_thermal_rtol*maxval(T_current))
call MPI_Allreduce(MPI_IN_PLACE,solution%stagConverged,1,MPI_LOGICAL,MPI_LAND,MPI_COMM_WORLD,ierr)
T_stagInc = T_current

55
src/grid/spectral_utilities.f90
View File

@ -28,15 +28,6 @@ module spectral_utilities
include 'fftw3-mpi.f03'
!--------------------------------------------------------------------------------------------------
! field labels information
enum, bind(c); enumerator :: &
FIELD_UNDEFINED_ID, &
FIELD_MECH_ID, &
FIELD_THERMAL_ID, &
FIELD_DAMAGE_ID
end enum
!--------------------------------------------------------------------------------------------------
! grid related information information
real(pReal), protected, public :: wgt !< weighting factor 1/Nelems
@ -139,11 +130,7 @@ module spectral_utilities
utilities_calculateRate, &
utilities_forwardField, &
utilities_updateCoords, &
utilities_saveReferenceStiffness, &
FIELD_UNDEFINED_ID, &
FIELD_MECH_ID, &
FIELD_THERMAL_ID, &
FIELD_DAMAGE_ID
utilities_saveReferenceStiffness
contains
@ -388,21 +375,24 @@ subroutine utilities_updateGamma(C)
gamma_hat = cmplx(0.0_pReal,0.0_pReal,pReal) ! for the singular point and any non invertible A
do k = grid3Offset+1, grid3Offset+grid3; do j = 1, grid(2); do i = 1, grid1Red
if (any([i,j,k] /= 1)) then ! singular point at xi=(0.0,0.0,0.0) i.e. i=j=k=1
forall(l = 1:3, m = 1:3) &
do concurrent (l = 1:3, m = 1:3)
xiDyad_cmplx(l,m) = conjg(-xi1st(l,i,j,k-grid3Offset))*xi1st(m,i,j,k-grid3Offset)
forall(l = 1:3, m = 1:3) &
end do
do concurrent(l = 1:3, m = 1:3)
temp33_complex(l,m) = sum(cmplx(C_ref(l,1:3,m,1:3),0.0_pReal)*xiDyad_cmplx)
end do
A(1:3,1:3) = temp33_complex%re; A(4:6,4:6) = temp33_complex%re
A(1:3,4:6) = temp33_complex%im; A(4:6,1:3) = -temp33_complex%im
if (abs(math_det33(A(1:3,1:3))) > 1e-16) then
call math_invert(A_inv, err, A)
temp33_complex = cmplx(A_inv(1:3,1:3),A_inv(1:3,4:6),pReal)
forall(l=1:3, m=1:3, n=1:3, o=1:3) &
do concurrent(l=1:3, m=1:3, n=1:3, o=1:3)
gamma_hat(l,m,n,o,i,j,k-grid3Offset) = temp33_complex(l,n)* &
conjg(-xi1st(o,i,j,k-grid3Offset))*xi1st(m,i,j,k-grid3Offset)
endif
endif
enddo; enddo; enddo
end do
end if
end if
end do; end do; end do
endif
end subroutine utilities_updateGamma
@ -505,32 +495,37 @@ subroutine utilities_fourierGammaConvolution(fieldAim)
memoryEfficient: if (num%memory_efficient) then
do k = 1, grid3; do j = 1, grid(2); do i = 1, grid1Red
if (any([i,j,k+grid3Offset] /= 1)) then ! singular point at xi=(0.0,0.0,0.0) i.e. i=j=k=1
forall(l = 1:3, m = 1:3) &
do concurrent(l = 1:3, m = 1:3)
xiDyad_cmplx(l,m) = conjg(-xi1st(l,i,j,k))*xi1st(m,i,j,k)
forall(l = 1:3, m = 1:3) &
end do
do concurrent(l = 1:3, m = 1:3)
temp33_complex(l,m) = sum(cmplx(C_ref(l,1:3,m,1:3),0.0_pReal)*xiDyad_cmplx)
end do
A(1:3,1:3) = temp33_complex%re; A(4:6,4:6) = temp33_complex%re
A(1:3,4:6) = temp33_complex%im; A(4:6,1:3) = -temp33_complex%im
if (abs(math_det33(A(1:3,1:3))) > 1e-16) then
call math_invert(A_inv, err, A)
temp33_complex = cmplx(A_inv(1:3,1:3),A_inv(1:3,4:6),pReal)
forall(l=1:3, m=1:3, n=1:3, o=1:3) &
do concurrent(l=1:3, m=1:3, n=1:3, o=1:3)
gamma_hat(l,m,n,o,1,1,1) = temp33_complex(l,n)*conjg(-xi1st(o,i,j,k))*xi1st(m,i,j,k)
end do
else
gamma_hat(1:3,1:3,1:3,1:3,1,1,1) = cmplx(0.0_pReal,0.0_pReal,pReal)
endif
forall(l = 1:3, m = 1:3) &
end if
do concurrent(l = 1:3, m = 1:3)
temp33_Complex(l,m) = sum(gamma_hat(l,m,1:3,1:3,1,1,1)*tensorField_fourier(1:3,1:3,i,j,k))
end do
tensorField_fourier(1:3,1:3,i,j,k) = temp33_Complex
endif
enddo; enddo; enddo
end if
end do; end do; end do
else memoryEfficient
do k = 1, grid3; do j = 1, grid(2); do i = 1,grid1Red
forall(l = 1:3, m = 1:3) &
do concurrent(l = 1:3, m = 1:3)
temp33_Complex(l,m) = sum(gamma_hat(l,m,1:3,1:3,i,j,k) * tensorField_fourier(1:3,1:3,i,j,k))
end do
tensorField_fourier(1:3,1:3,i,j,k) = temp33_Complex
enddo; enddo; enddo
endif memoryEfficient
end do; end do; end do
end if memoryEfficient
if (grid3Offset == 0) tensorField_fourier(1:3,1:3,1,1,1) = cmplx(fieldAim/wgt,0.0_pReal,pReal)

4
src/lattice.f90
View File

@ -2070,7 +2070,7 @@ end function getlabels
!> @brief Equivalent Poisson's ratio (ν)
!> @details https://doi.org/10.1143/JPSJ.20.635
!--------------------------------------------------------------------------------------------------
function lattice_equivalent_nu(C,assumption) result(nu)
pure function lattice_equivalent_nu(C,assumption) result(nu)
real(pReal), dimension(6,6), intent(in) :: C !< Stiffness tensor (Voigt notation)
character(len=5), intent(in) :: assumption !< Assumption ('Voigt' = isostrain, 'Reuss' = isostress)
@ -2103,7 +2103,7 @@ end function lattice_equivalent_nu
!> @brief Equivalent shear modulus (μ)
!> @details https://doi.org/10.1143/JPSJ.20.635
!--------------------------------------------------------------------------------------------------
function lattice_equivalent_mu(C,assumption) result(mu)
pure function lattice_equivalent_mu(C,assumption) result(mu)
real(pReal), dimension(6,6), intent(in) :: C !< Stiffness tensor (Voigt notation)
character(len=5), intent(in) :: assumption !< Assumption ('Voigt' = isostrain, 'Reuss' = isostress)

79
src/math.f90
View File

@ -512,7 +512,7 @@ end subroutine math_invert33
!--------------------------------------------------------------------------------------------------
!> @brief Inversion of symmetriced 3x3x3x3 matrix
!--------------------------------------------------------------------------------------------------
function math_invSym3333(A)
pure function math_invSym3333(A)
real(pReal),dimension(3,3,3,3) :: math_invSym3333
@ -538,7 +538,7 @@ end function math_invSym3333
!--------------------------------------------------------------------------------------------------
!> @brief invert quadratic matrix of arbitrary dimension
!--------------------------------------------------------------------------------------------------
subroutine math_invert(InvA, error, A)
pure subroutine math_invert(InvA, error, A)
real(pReal), dimension(:,:), intent(in) :: A
real(pReal), dimension(size(A,1),size(A,1)), intent(out) :: invA
@ -961,45 +961,42 @@ pure function math_3333toVoigt66(m3333)
end function math_3333toVoigt66
!--------------------------------------------------------------------------------------------------
!> @brief draw a random sample from Gauss variable
!> @brief Draw a sample from a normal distribution.
!> @details https://en.wikipedia.org/wiki/Box%E2%80%93Muller_transform
!> https://masuday.github.io/fortran_tutorial/random.html
!--------------------------------------------------------------------------------------------------
real(pReal) function math_sampleGaussVar(mu, sigma, width)
impure elemental subroutine math_normal(x,mu,sigma)
real(pReal), intent(in) :: mu, & !< mean
sigma !< standard deviation
real(pReal), intent(in), optional :: width !< cut off as multiples of standard deviation
real(pReal), intent(out) :: x
real(pReal), intent(in), optional :: mu, sigma
real(pReal), dimension(2) :: rnd ! random numbers
real(pReal) :: scatter, & ! normalized scatter around mean
width_
real(pReal) :: sigma_, mu_
real(pReal), dimension(2) :: rnd
if (abs(sigma) < tol_math_check) then
math_sampleGaussVar = mu
if (present(mu)) then
mu_ = mu
else
if (present(width)) then
width_ = width
else
width_ = 3.0_pReal ! use +-3*sigma as default scatter
endif
mu_ = 0.0_pReal
end if
do
call random_number(rnd)
scatter = width_ * (2.0_pReal * rnd(1) - 1.0_pReal)
if (rnd(2) <= exp(-0.5_pReal * scatter**2)) exit ! test if scattered value is drawn
enddo
if (present(sigma)) then
sigma_ = sigma
else
sigma_ = 1.0_pReal
end if
math_sampleGaussVar = scatter * sigma
endif
call random_number(rnd)
x = mu_ + sigma_ * sqrt(-2.0_pReal*log(1.0_pReal-rnd(1)))*cos(2.0_pReal*PI*(1.0_pReal - rnd(2)))
end function math_sampleGaussVar
end subroutine math_normal
!--------------------------------------------------------------------------------------------------
!> @brief eigenvalues and eigenvectors of symmetric matrix
!--------------------------------------------------------------------------------------------------
subroutine math_eigh(w,v,error,m)
pure subroutine math_eigh(w,v,error,m)
real(pReal), dimension(:,:), intent(in) :: m !< quadratic matrix to compute eigenvectors and values of
real(pReal), dimension(size(m,1)), intent(out) :: w !< eigenvalues
@ -1024,7 +1021,7 @@ end subroutine math_eigh
!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
!> @details See http://arxiv.org/abs/physics/0610206 (DSYEVH3)
!--------------------------------------------------------------------------------------------------
subroutine math_eigh33(w,v,m)
pure subroutine math_eigh33(w,v,m)
real(pReal), dimension(3,3),intent(in) :: m !< 3x3 matrix to compute eigenvectors and values of
real(pReal), dimension(3), intent(out) :: w !< eigenvalues
@ -1117,7 +1114,7 @@ end function math_rotationalPart
!> @brief Eigenvalues of symmetric matrix
! will return NaN on error
!--------------------------------------------------------------------------------------------------
function math_eigvalsh(m)
pure function math_eigvalsh(m)
real(pReal), dimension(:,:), intent(in) :: m !< symmetric matrix to compute eigenvalues of
real(pReal), dimension(size(m,1)) :: math_eigvalsh
@ -1140,7 +1137,7 @@ end function math_eigvalsh
!> but apparently more stable solution and has general LAPACK powered version for arbritrary sized
!> matrices as fallback
!--------------------------------------------------------------------------------------------------
function math_eigvalsh33(m)
pure function math_eigvalsh33(m)
real(pReal), intent(in), dimension(3,3) :: m !< 3x3 symmetric matrix to compute eigenvalues of
real(pReal), dimension(3) :: math_eigvalsh33,I
@ -1434,6 +1431,28 @@ subroutine selfTest
if (dNeq0(math_LeviCivita(ijk(1),ijk(2),ijk(3)))) &
error stop 'math_LeviCivita'
normal_distribution: block
integer, parameter :: N = 1000000
real(pReal), dimension(:), allocatable :: r
real(pReal) :: mu, sigma
allocate(r(N))
call random_number(mu)
call random_number(sigma)
sigma = 1.0_pReal + sigma*5.0_pReal
mu = (mu-0.5_pReal)*10_pReal
call math_normal(r,mu,sigma)
if (abs(mu -sum(r)/real(N,pReal))>5.0e-2_pReal) &
error stop 'math_normal(mu)'
mu = sum(r)/real(N,pReal)
if (abs(sigma**2 -1.0_pReal/real(N-1,pReal) * sum((r-mu)**2))/sigma > 5.0e-2_pReal) &
error stop 'math_normal(sigma)'
end block normal_distribution
end subroutine selfTest
end module math

2
src/phase.f90
View File

@ -155,7 +155,7 @@ module phase
real(pReal), dimension(3,3) :: P
end function phase_P
module function thermal_T(ph,en) result(T)
pure module function thermal_T(ph,en) result(T)
integer, intent(in) :: ph,en
real(pReal) :: T
end function thermal_T

44
src/phase_mechanical.f90
View File

@ -5,17 +5,17 @@ submodule(phase) mechanical
enum, bind(c); enumerator :: &
PLASTICITY_UNDEFINED_ID, &
PLASTICITY_NONE_ID, &
PLASTICITY_ISOTROPIC_ID, &
PLASTICITY_PHENOPOWERLAW_ID, &
PLASTICITY_KINEHARDENING_ID, &
PLASTICITY_DISLOTWIN_ID, &
PLASTICITY_DISLOTUNGSTEN_ID, &
PLASTICITY_NONLOCAL_ID, &
KINEMATICS_UNDEFINED_ID, &
KINEMATICS_CLEAVAGE_OPENING_ID, &
KINEMATICS_THERMAL_EXPANSION_ID
PLASTIC_UNDEFINED_ID, &
PLASTIC_NONE_ID, &
PLASTIC_ISOTROPIC_ID, &
PLASTIC_PHENOPOWERLAW_ID, &
PLASTIC_KINEHARDENING_ID, &
PLASTIC_DISLOTWIN_ID, &
PLASTIC_DISLOTUNGSTEN_ID, &
PLASTIC_NONLOCAL_ID, &
EIGEN_UNDEFINED_ID, &
EIGEN_CLEAVAGE_OPENING_ID, &
EIGEN_THERMAL_EXPANSION_ID
end enum
type(tTensorContainer), dimension(:), allocatable :: &
@ -37,7 +37,7 @@ submodule(phase) mechanical
phase_mechanical_S0
integer(kind(PLASTICITY_undefined_ID)), dimension(:), allocatable :: &
integer(kind(PLASTIC_undefined_ID)), dimension(:), allocatable :: &
phase_plasticity !< plasticity of each phase
integer :: phase_plasticity_maxSizeDotState
@ -168,17 +168,17 @@ submodule(phase) mechanical
integer, intent(in) :: ph,en
end function plastic_dislotwin_homogenizedC
module function elastic_C66(ph,en) result(C66)
pure module function elastic_C66(ph,en) result(C66)
real(pReal), dimension(6,6) :: C66
integer, intent(in) :: ph, en
end function elastic_C66
module function elastic_mu(ph,en) result(mu)
pure module function elastic_mu(ph,en) result(mu)
real(pReal) :: mu
integer, intent(in) :: ph, en
end function elastic_mu
module function elastic_nu(ph,en) result(nu)
pure module function elastic_nu(ph,en) result(nu)
real(pReal) :: nu
integer, intent(in) :: ph, en
end function elastic_nu
@ -291,7 +291,7 @@ module subroutine mechanical_init(phases)
call elastic_init(phases)
allocate(plasticState(phases%length))
allocate(phase_plasticity(phases%length),source = PLASTICITY_undefined_ID)
allocate(phase_plasticity(phases%length),source = PLASTIC_UNDEFINED_ID)
call plastic_init()
do ph = 1,phases%length
plasticState(ph)%state0 = plasticState(ph)%state
@ -340,22 +340,22 @@ module subroutine mechanical_results(group,ph)
select case(phase_plasticity(ph))
case(PLASTICITY_ISOTROPIC_ID)
case(PLASTIC_ISOTROPIC_ID)
call plastic_isotropic_results(ph,group//'mechanical/')
case(PLASTICITY_PHENOPOWERLAW_ID)
case(PLASTIC_PHENOPOWERLAW_ID)
call plastic_phenopowerlaw_results(ph,group//'mechanical/')
case(PLASTICITY_KINEHARDENING_ID)
case(PLASTIC_KINEHARDENING_ID)
call plastic_kinehardening_results(ph,group//'mechanical/')
case(PLASTICITY_DISLOTWIN_ID)
case(PLASTIC_DISLOTWIN_ID)
call plastic_dislotwin_results(ph,group//'mechanical/')
case(PLASTICITY_DISLOTUNGSTEN_ID)
case(PLASTIC_DISLOTUNGSTEN_ID)
call plastic_dislotungsten_results(ph,group//'mechanical/')
case(PLASTICITY_NONLOCAL_ID)
case(PLASTIC_NONLOCAL_ID)
call plastic_nonlocal_results(ph,group//'mechanical/')
end select

18
src/phase_mechanical_eigen.f90
View File

@ -3,9 +3,9 @@ submodule(phase:mechanical) eigen
integer, dimension(:), allocatable :: &
Nmodels
integer(kind(KINEMATICS_UNDEFINED_ID)), dimension(:,:), allocatable :: &
integer(kind(EIGEN_UNDEFINED_ID)), dimension(:,:), allocatable :: &
model
integer(kind(KINEMATICS_UNDEFINED_ID)), dimension(:), allocatable :: &
integer(kind(EIGEN_UNDEFINED_ID)), dimension(:), allocatable :: &
model_damage
interface
@ -57,15 +57,15 @@ module subroutine eigen_init(phases)
Nmodels(ph) = kinematics%length
end do
allocate(model(maxval(Nmodels),phases%length), source = KINEMATICS_undefined_ID)
allocate(model(maxval(Nmodels),phases%length), source = EIGEN_undefined_ID)
if (maxval(Nmodels) /= 0) then
where(thermalexpansion_init(maxval(Nmodels))) model = KINEMATICS_thermal_expansion_ID
where(thermalexpansion_init(maxval(Nmodels))) model = EIGEN_thermal_expansion_ID
endif
allocate(model_damage(phases%length), source = KINEMATICS_UNDEFINED_ID)
allocate(model_damage(phases%length), source = EIGEN_UNDEFINED_ID)
where(damage_anisobrittle_init()) model_damage = KINEMATICS_cleavage_opening_ID
where(damage_anisobrittle_init()) model_damage = EIGEN_cleavage_opening_ID
end subroutine eigen_init
@ -173,7 +173,7 @@ module subroutine phase_LiAndItsTangents(Li, dLi_dS, dLi_dFi, &
plasticType: select case (phase_plasticity(ph))
case (PLASTICITY_isotropic_ID) plasticType
case (PLASTIC_isotropic_ID) plasticType
call plastic_isotropic_LiAndItsTangent(my_Li, my_dLi_dS, S ,ph,en)
Li = Li + my_Li
dLi_dS = dLi_dS + my_dLi_dS
@ -182,7 +182,7 @@ module subroutine phase_LiAndItsTangents(Li, dLi_dS, dLi_dFi, &
KinematicsLoop: do k = 1, Nmodels(ph)
kinematicsType: select case (model(k,ph))
case (KINEMATICS_thermal_expansion_ID) kinematicsType
case (EIGEN_thermal_expansion_ID) kinematicsType
call thermalexpansion_LiAndItsTangent(my_Li, my_dLi_dS, ph,en)
Li = Li + my_Li
dLi_dS = dLi_dS + my_dLi_dS
@ -191,7 +191,7 @@ module subroutine phase_LiAndItsTangents(Li, dLi_dS, dLi_dFi, &
end do KinematicsLoop
select case (model_damage(ph))
case (KINEMATICS_cleavage_opening_ID)
case (EIGEN_cleavage_opening_ID)
call damage_anisobrittle_LiAndItsTangent(my_Li, my_dLi_dS, S, ph, en)
Li = Li + my_Li
dLi_dS = dLi_dS + my_dLi_dS

8
src/phase_mechanical_elastic.f90
View File

@ -86,7 +86,7 @@ end subroutine elastic_init
!--------------------------------------------------------------------------------------------------
!> @brief return 6x6 elasticity tensor
!--------------------------------------------------------------------------------------------------
module function elastic_C66(ph,en) result(C66)
pure module function elastic_C66(ph,en) result(C66)
integer, intent(in) :: &
ph, &
@ -140,7 +140,7 @@ end function elastic_C66
!--------------------------------------------------------------------------------------------------
!> @brief return shear modulus
!--------------------------------------------------------------------------------------------------
module function elastic_mu(ph,en) result(mu)
pure module function elastic_mu(ph,en) result(mu)
integer, intent(in) :: &
ph, &
@ -157,7 +157,7 @@ end function elastic_mu
!--------------------------------------------------------------------------------------------------
!> @brief return Poisson ratio
!--------------------------------------------------------------------------------------------------
module function elastic_nu(ph,en) result(nu)
pure module function elastic_nu(ph,en) result(nu)
integer, intent(in) :: &
ph, &
@ -223,7 +223,7 @@ module function phase_homogenizedC66(ph,en) result(C)
plasticType: select case (phase_plasticity(ph))
case (PLASTICITY_DISLOTWIN_ID) plasticType
case (PLASTIC_DISLOTWIN_ID) plasticType
C = plastic_dislotwin_homogenizedC(ph,en)
case default plasticType
C = elastic_C66(ph,en)

78
src/phase_mechanical_plastic.f90
View File

@ -73,47 +73,37 @@ submodule(phase:mechanical) plastic
en
end subroutine kinehardening_LpAndItsTangent
module subroutine dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp,T,ph,en)
module subroutine dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
real(pReal), dimension(3,3), intent(out) :: &
Lp
real(pReal), dimension(3,3,3,3), intent(out) :: &
dLp_dMp
real(pReal), dimension(3,3), intent(in) :: &
Mp
real(pReal), intent(in) :: &
T
integer, intent(in) :: &
ph, &
en
end subroutine dislotwin_LpAndItsTangent
pure module subroutine dislotungsten_LpAndItsTangent(Lp,dLp_dMp,Mp,T,ph,en)
pure module subroutine dislotungsten_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
real(pReal), dimension(3,3), intent(out) :: &
Lp
real(pReal), dimension(3,3,3,3), intent(out) :: &
dLp_dMp
real(pReal), dimension(3,3), intent(in) :: &
Mp
real(pReal), intent(in) :: &
T
integer, intent(in) :: &
ph, &
en
end subroutine dislotungsten_LpAndItsTangent
module subroutine nonlocal_LpAndItsTangent(Lp,dLp_dMp, &
Mp,Temperature,ph,en)
module subroutine nonlocal_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
real(pReal), dimension(3,3), intent(out) :: &
Lp
real(pReal), dimension(3,3,3,3), intent(out) :: &
dLp_dMp
real(pReal), dimension(3,3), intent(in) :: &
Mp !< Mandel stress
real(pReal), intent(in) :: &
Temperature
integer, intent(in) :: &
ph, &
en
@ -224,15 +214,15 @@ module subroutine plastic_init
print'(/,1x,a)', '<<<+- phase:mechanical:plastic init -+>>>'
where(plastic_none_init()) phase_plasticity = PLASTICITY_NONE_ID
where(plastic_isotropic_init()) phase_plasticity = PLASTICITY_ISOTROPIC_ID
where(plastic_phenopowerlaw_init()) phase_plasticity = PLASTICITY_PHENOPOWERLAW_ID
where(plastic_kinehardening_init()) phase_plasticity = PLASTICITY_KINEHARDENING_ID
where(plastic_dislotwin_init()) phase_plasticity = PLASTICITY_DISLOTWIN_ID
where(plastic_dislotungsten_init()) phase_plasticity = PLASTICITY_DISLOTUNGSTEN_ID
where(plastic_nonlocal_init()) phase_plasticity = PLASTICITY_NONLOCAL_ID
where(plastic_none_init()) phase_plasticity = PLASTIC_NONE_ID
where(plastic_isotropic_init()) phase_plasticity = PLASTIC_ISOTROPIC_ID
where(plastic_phenopowerlaw_init()) phase_plasticity = PLASTIC_PHENOPOWERLAW_ID
where(plastic_kinehardening_init()) phase_plasticity = PLASTIC_KINEHARDENING_ID
where(plastic_dislotwin_init()) phase_plasticity = PLASTIC_DISLOTWIN_ID
where(plastic_dislotungsten_init()) phase_plasticity = PLASTIC_DISLOTUNGSTEN_ID
where(plastic_nonlocal_init()) phase_plasticity = PLASTIC_NONLOCAL_ID
if (any(phase_plasticity == PLASTICITY_undefined_ID)) call IO_error(201)
if (any(phase_plasticity == PLASTIC_undefined_ID)) call IO_error(201)
end subroutine plastic_init
@ -262,7 +252,7 @@ module subroutine plastic_LpAndItsTangents(Lp, dLp_dS, dLp_dFi, &
i, j
if (phase_plasticity(ph) == PLASTICITY_NONE_ID) then
if (phase_plasticity(ph) == PLASTIC_NONE_ID) then
Lp = 0.0_pReal
dLp_dFi = 0.0_pReal
dLp_dS = 0.0_pReal
@ -272,23 +262,23 @@ module subroutine plastic_LpAndItsTangents(Lp, dLp_dS, dLp_dFi, &
plasticType: select case (phase_plasticity(ph))
case (PLASTICITY_ISOTROPIC_ID) plasticType
case (PLASTIC_ISOTROPIC_ID) plasticType
call isotropic_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
case (PLASTICITY_PHENOPOWERLAW_ID) plasticType
case (PLASTIC_PHENOPOWERLAW_ID) plasticType
call phenopowerlaw_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
case (PLASTICITY_KINEHARDENING_ID) plasticType
case (PLASTIC_KINEHARDENING_ID) plasticType
call kinehardening_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
case (PLASTICITY_NONLOCAL_ID) plasticType
call nonlocal_LpAndItsTangent(Lp,dLp_dMp,Mp, thermal_T(ph,en),ph,en)
case (PLASTIC_NONLOCAL_ID) plasticType
call nonlocal_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
case (PLASTICITY_DISLOTWIN_ID) plasticType
call dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp, thermal_T(ph,en),ph,en)
case (PLASTIC_DISLOTWIN_ID) plasticType
call dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
case (PLASTICITY_DISLOTUNGSTEN_ID) plasticType
call dislotungsten_LpAndItsTangent(Lp,dLp_dMp,Mp, thermal_T(ph,en),ph,en)
case (PLASTIC_DISLOTUNGSTEN_ID) plasticType
call dislotungsten_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
end select plasticType
@ -321,28 +311,28 @@ module function plastic_dotState(subdt,co,ip,el,ph,en) result(broken)
logical :: broken
if (phase_plasticity(ph) /= PLASTICITY_NONE_ID) then
if (phase_plasticity(ph) /= PLASTIC_NONE_ID) then
Mp = matmul(matmul(transpose(phase_mechanical_Fi(ph)%data(1:3,1:3,en)),&
phase_mechanical_Fi(ph)%data(1:3,1:3,en)),phase_mechanical_S(ph)%data(1:3,1:3,en))
plasticType: select case (phase_plasticity(ph))
case (PLASTICITY_ISOTROPIC_ID) plasticType
case (PLASTIC_ISOTROPIC_ID) plasticType
call isotropic_dotState(Mp,ph,en)
case (PLASTICITY_PHENOPOWERLAW_ID) plasticType
case (PLASTIC_PHENOPOWERLAW_ID) plasticType
call phenopowerlaw_dotState(Mp,ph,en)
case (PLASTICITY_KINEHARDENING_ID) plasticType
case (PLASTIC_KINEHARDENING_ID) plasticType
call plastic_kinehardening_dotState(Mp,ph,en)
case (PLASTICITY_DISLOTWIN_ID) plasticType
case (PLASTIC_DISLOTWIN_ID) plasticType
call dislotwin_dotState(Mp,thermal_T(ph,en),ph,en)
case (PLASTICITY_DISLOTUNGSTEN_ID) plasticType
case (PLASTIC_DISLOTUNGSTEN_ID) plasticType
call dislotungsten_dotState(Mp,thermal_T(ph,en),ph,en)
case (PLASTICITY_NONLOCAL_ID) plasticType
case (PLASTIC_NONLOCAL_ID) plasticType
call nonlocal_dotState(Mp,thermal_T(ph,en),subdt,ph,en,ip,el)
end select plasticType
end if
@ -372,13 +362,13 @@ module subroutine plastic_dependentState(co, ip, el)
plasticType: select case (phase_plasticity(ph))
case (PLASTICITY_DISLOTWIN_ID) plasticType
case (PLASTIC_DISLOTWIN_ID) plasticType
call dislotwin_dependentState(thermal_T(ph,en),ph,en)
case (PLASTICITY_DISLOTUNGSTEN_ID) plasticType
case (PLASTIC_DISLOTUNGSTEN_ID) plasticType
call dislotungsten_dependentState(ph,en)
case (PLASTICITY_NONLOCAL_ID) plasticType
case (PLASTIC_NONLOCAL_ID) plasticType
call nonlocal_dependentState(ph,en,ip,el)
end select plasticType
@ -406,7 +396,7 @@ module function plastic_deltaState(ph, en) result(broken)
broken = .false.
select case (phase_plasticity(ph))
case (PLASTICITY_NONLOCAL_ID,PLASTICITY_KINEHARDENING_ID)
case (PLASTIC_NONLOCAL_ID,PLASTIC_KINEHARDENING_ID)
Mp = matmul(matmul(transpose(phase_mechanical_Fi(ph)%data(1:3,1:3,en)),&
phase_mechanical_Fi(ph)%data(1:3,1:3,en)),&
@ -414,10 +404,10 @@ module function plastic_deltaState(ph, en) result(broken)
plasticType: select case (phase_plasticity(ph))
case (PLASTICITY_KINEHARDENING_ID) plasticType
case (PLASTIC_KINEHARDENING_ID) plasticType
call plastic_kinehardening_deltaState(Mp,ph,en)
case (PLASTICITY_NONLOCAL_ID) plasticType
case (PLASTIC_NONLOCAL_ID) plasticType
call plastic_nonlocal_deltaState(Mp,ph,en)
end select plasticType

8
src/phase_mechanical_plastic_dislotungsten.f90
View File

@ -257,27 +257,27 @@ end function plastic_dislotungsten_init
!> @brief Calculate plastic velocity gradient and its tangent.
!--------------------------------------------------------------------------------------------------
pure module subroutine dislotungsten_LpAndItsTangent(Lp,dLp_dMp, &
Mp,T,ph,en)
Mp,ph,en)
real(pReal), dimension(3,3), intent(out) :: &
Lp !< plastic velocity gradient
real(pReal), dimension(3,3,3,3), intent(out) :: &
dLp_dMp !< derivative of Lp with respect to the Mandel stress
real(pReal), dimension(3,3), intent(in) :: &
Mp !< Mandel stress
real(pReal), intent(in) :: &
T !< temperature
integer, intent(in) :: &
ph, &
en
integer :: &
i,k,l,m,n
real(pReal) :: &
T !< temperature
real(pReal), dimension(param(ph)%sum_N_sl) :: &
dot_gamma_pos,dot_gamma_neg, &
ddot_gamma_dtau_pos,ddot_gamma_dtau_neg
T = thermal_T(ph,en)
Lp = 0.0_pReal
dLp_dMp = 0.0_pReal

134
src/phase_mechanical_plastic_dislotwin.f90
View File

@ -476,18 +476,18 @@ module function plastic_dislotwin_homogenizedC(ph,en) result(homogenizedC)
C66_tw, &
C66_tr
integer :: i
real(pReal) :: f_unrotated
real(pReal) :: f_matrix
C = elastic_C66(ph,en)
associate(prm => param(ph), stt => state(ph))
f_unrotated = 1.0_pReal &
- sum(stt%f_tw(1:prm%sum_N_tw,en)) &
- sum(stt%f_tr(1:prm%sum_N_tr,en))
f_matrix = 1.0_pReal &
- sum(stt%f_tw(1:prm%sum_N_tw,en)) &
- sum(stt%f_tr(1:prm%sum_N_tr,en))
homogenizedC = f_unrotated * C
homogenizedC = f_matrix * C
twinActive: if (prm%sum_N_tw > 0) then
C66_tw = lattice_C66_twin(prm%N_tw,C,phase_lattice(ph),phase_cOverA(ph))
@ -513,20 +513,20 @@ end function plastic_dislotwin_homogenizedC
!--------------------------------------------------------------------------------------------------
!> @brief Calculate plastic velocity gradient and its tangent.
!--------------------------------------------------------------------------------------------------
module subroutine dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp,T,ph,en)
module subroutine dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp,ph,en)
real(pReal), dimension(3,3), intent(out) :: Lp
real(pReal), dimension(3,3,3,3), intent(out) :: dLp_dMp
real(pReal), dimension(3,3), intent(in) :: Mp
integer, intent(in) :: ph,en
real(pReal), intent(in) :: T
integer :: i,k,l,m,n
real(pReal) :: &
f_unrotated,StressRatio_p,&
E_kB_T, &
ddot_gamma_dtau, &
tau
f_matrix,StressRatio_p,&
E_kB_T, &
ddot_gamma_dtau, &
tau, &
T
real(pReal), dimension(param(ph)%sum_N_sl) :: &
dot_gamma_sl,ddot_gamma_dtau_sl
real(pReal), dimension(param(ph)%sum_N_tw) :: &
@ -556,69 +556,71 @@ module subroutine dislotwin_LpAndItsTangent(Lp,dLp_dMp,Mp,T,ph,en)
0, 1, 1 &
],pReal),[ 3,6])
associate(prm => param(ph), stt => state(ph))
f_unrotated = 1.0_pReal &
- sum(stt%f_tw(1:prm%sum_N_tw,en)) &
- sum(stt%f_tr(1:prm%sum_N_tr,en))
T = thermal_T(ph,en)
Lp = 0.0_pReal
dLp_dMp = 0.0_pReal
call kinetics_sl(Mp,T,ph,en,dot_gamma_sl,ddot_gamma_dtau_sl)
slipContribution: do i = 1, prm%sum_N_sl
Lp = Lp + dot_gamma_sl(i)*prm%P_sl(1:3,1:3,i)
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau_sl(i) * prm%P_sl(k,l,i) * prm%P_sl(m,n,i)
end do slipContribution
associate(prm => param(ph), stt => state(ph))
call kinetics_tw(Mp,T,dot_gamma_sl,ph,en,dot_gamma_tw,ddot_gamma_dtau_tw)
twinContibution: do i = 1, prm%sum_N_tw
Lp = Lp + dot_gamma_tw(i)*prm%P_tw(1:3,1:3,i)
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau_tw(i)* prm%P_tw(k,l,i)*prm%P_tw(m,n,i)
end do twinContibution
f_matrix = 1.0_pReal &
- sum(stt%f_tw(1:prm%sum_N_tw,en)) &
- sum(stt%f_tr(1:prm%sum_N_tr,en))
call kinetics_tr(Mp,T,dot_gamma_sl,ph,en,dot_gamma_tr,ddot_gamma_dtau_tr)
transContibution: do i = 1, prm%sum_N_tr
Lp = Lp + dot_gamma_tr(i)*prm%P_tr(1:3,1:3,i)
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau_tr(i)* prm%P_tr(k,l,i)*prm%P_tr(m,n,i)
end do transContibution
call kinetics_sl(Mp,T,ph,en,dot_gamma_sl,ddot_gamma_dtau_sl)
slipContribution: do i = 1, prm%sum_N_sl
Lp = Lp + dot_gamma_sl(i)*prm%P_sl(1:3,1:3,i)
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau_sl(i) * prm%P_sl(k,l,i) * prm%P_sl(m,n,i)
end do slipContribution
Lp = Lp * f_unrotated
dLp_dMp = dLp_dMp * f_unrotated
call kinetics_tw(Mp,T,dot_gamma_sl,ph,en,dot_gamma_tw,ddot_gamma_dtau_tw)
twinContibution: do i = 1, prm%sum_N_tw
Lp = Lp + dot_gamma_tw(i)*prm%P_tw(1:3,1:3,i)
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau_tw(i)* prm%P_tw(k,l,i)*prm%P_tw(m,n,i)
end do twinContibution
shearBandingContribution: if (dNeq0(prm%v_sb)) then
call kinetics_tr(Mp,T,dot_gamma_sl,ph,en,dot_gamma_tr,ddot_gamma_dtau_tr)
transContibution: do i = 1, prm%sum_N_tr
Lp = Lp + dot_gamma_tr(i)*prm%P_tr(1:3,1:3,i)
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau_tr(i)* prm%P_tr(k,l,i)*prm%P_tr(m,n,i)
end do transContibution
E_kB_T = prm%E_sb/(K_B*T)
call math_eigh33(eigValues,eigVectors,Mp) ! is Mp symmetric by design?
Lp = Lp * f_matrix
dLp_dMp = dLp_dMp * f_matrix
do i = 1,6
P_sb = 0.5_pReal * math_outer(matmul(eigVectors,sb_sComposition(1:3,i)),&
matmul(eigVectors,sb_mComposition(1:3,i)))
tau = math_tensordot(Mp,P_sb)
shearBandingContribution: if (dNeq0(prm%v_sb)) then
significantShearBandStress: if (abs(tau) > tol_math_check) then
StressRatio_p = (abs(tau)/prm%xi_sb)**prm%p_sb
dot_gamma_sb = sign(prm%v_sb*exp(-E_kB_T*(1-StressRatio_p)**prm%q_sb), tau)
ddot_gamma_dtau = abs(dot_gamma_sb)*E_kB_T*prm%p_sb*prm%q_sb/prm%xi_sb &
* (abs(tau)/prm%xi_sb)**(prm%p_sb-1.0_pReal) &
* (1.0_pReal-StressRatio_p)**(prm%q_sb-1.0_pReal)
E_kB_T = prm%E_sb/(K_B*T)
call math_eigh33(eigValues,eigVectors,Mp) ! is Mp symmetric by design?
Lp = Lp + dot_gamma_sb * P_sb
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau * P_sb(k,l) * P_sb(m,n)
end if significantShearBandStress
end do
do i = 1,6
P_sb = 0.5_pReal * math_outer(matmul(eigVectors,sb_sComposition(1:3,i)),&
matmul(eigVectors,sb_mComposition(1:3,i)))
tau = math_tensordot(Mp,P_sb)
end if shearBandingContribution
significantShearBandStress: if (abs(tau) > tol_math_check) then
StressRatio_p = (abs(tau)/prm%xi_sb)**prm%p_sb
dot_gamma_sb = sign(prm%v_sb*exp(-E_kB_T*(1-StressRatio_p)**prm%q_sb), tau)
ddot_gamma_dtau = abs(dot_gamma_sb)*E_kB_T*prm%p_sb*prm%q_sb/prm%xi_sb &
* (abs(tau)/prm%xi_sb)**(prm%p_sb-1.0_pReal) &
* (1.0_pReal-StressRatio_p)**(prm%q_sb-1.0_pReal)
end associate
Lp = Lp + dot_gamma_sb * P_sb
forall (k=1:3,l=1:3,m=1:3,n=1:3) &
dLp_dMp(k,l,m,n) = dLp_dMp(k,l,m,n) &
+ ddot_gamma_dtau * P_sb(k,l) * P_sb(m,n)
end if significantShearBandStress
end do
end if shearBandingContribution
end associate
end subroutine dislotwin_LpAndItsTangent
@ -638,7 +640,7 @@ module subroutine dislotwin_dotState(Mp,T,ph,en)
integer :: i
real(pReal) :: &
f_unrotated, &
f_matrix, &
d_hat, &
v_cl, & !< climb velocity
tau, &
@ -661,9 +663,9 @@ module subroutine dislotwin_dotState(Mp,T,ph,en)
mu = elastic_mu(ph,en)
nu = elastic_nu(ph,en)
f_unrotated = 1.0_pReal &
- sum(stt%f_tw(1:prm%sum_N_tw,en)) &
- sum(stt%f_tr(1:prm%sum_N_tr,en))
f_matrix = 1.0_pReal &
- sum(stt%f_tw(1:prm%sum_N_tw,en)) &
- sum(stt%f_tr(1:prm%sum_N_tr,en))
call kinetics_sl(Mp,T,ph,en,dot_gamma_sl)
dot%gamma_sl(:,en) = abs(dot_gamma_sl)
@ -709,10 +711,10 @@ module subroutine dislotwin_dotState(Mp,T,ph,en)
- dot_rho_dip_climb
call kinetics_tw(Mp,T,dot_gamma_sl,ph,en,dot_gamma_tw)
dot%f_tw(:,en) = f_unrotated*dot_gamma_tw/prm%gamma_char
dot%f_tw(:,en) = f_matrix*dot_gamma_tw/prm%gamma_char
call kinetics_tr(Mp,T,dot_gamma_sl,ph,en,dot_gamma_tr)
dot%f_tr(:,en) = f_unrotated*dot_gamma_tr
dot%f_tr(:,en) = f_matrix*dot_gamma_tr
end associate

2
src/phase_mechanical_plastic_kinehardening.f90
View File

@ -86,6 +86,8 @@ module function plastic_kinehardening_init() result(myPlasticity)
print'(/,1x,a)', '<<<+- phase:mechanical:plastic:kinehardening init -+>>>'
print'(/,a,i0)', ' # phases: ',count(myPlasticity); flush(IO_STDOUT)
print'(/,1x,a)', 'J.A. Wollmershauser et al., International Journal of Fatigue 36:181–193, 2012'
print'( 1x,a)', 'https://doi.org/10.1016/j.ijfatigue.2011.07.008'
phases => config_material%get('phase')
allocate(param(phases%length))

346
src/phase_mechanical_plastic_nonlocal.f90
View File

@ -741,7 +741,7 @@ end subroutine nonlocal_dependentState
!> @brief calculates plastic velocity gradient and its tangent
!--------------------------------------------------------------------------------------------------
module subroutine nonlocal_LpAndItsTangent(Lp,dLp_dMp, &
Mp,Temperature,ph,en)
Mp,ph,en)
real(pReal), dimension(3,3), intent(out) :: &
Lp !< plastic velocity gradient
real(pReal), dimension(3,3,3,3), intent(out) :: &
@ -749,9 +749,6 @@ module subroutine nonlocal_LpAndItsTangent(Lp,dLp_dMp, &
integer, intent(in) :: &
ph, &
en
real(pReal), intent(in) :: &
Temperature !< temperature
real(pReal), dimension(3,3), intent(in) :: &
Mp
!< derivative of Lp with respect to Mp
@ -771,67 +768,72 @@ module subroutine nonlocal_LpAndItsTangent(Lp,dLp_dMp, &
real(pReal), dimension(param(ph)%sum_N_sl) :: &
tau, & !< resolved shear stress including backstress terms
dot_gamma !< shear rate
real(pReal) :: &
Temperature !< temperature
Temperature = thermal_T(ph,en)
Lp = 0.0_pReal
dLp_dMp = 0.0_pReal
associate(prm => param(ph),dst=>dependentState(ph),stt=>state(ph))
!*** shortcut to state variables
rho = getRho(ph,en)
rhoSgl = rho(:,sgl)
!*** shortcut to state variables
rho = getRho(ph,en)
rhoSgl = rho(:,sgl)
do s = 1,prm%sum_N_sl
tau(s) = math_tensordot(Mp, prm%P_sl(1:3,1:3,s))
tauNS(s,1) = tau(s)
tauNS(s,2) = tau(s)
if (tau(s) > 0.0_pReal) then
tauNS(s,3) = math_tensordot(Mp, +prm%P_nS_pos(1:3,1:3,s))
tauNS(s,4) = math_tensordot(Mp, -prm%P_nS_neg(1:3,1:3,s))
else
tauNS(s,3) = math_tensordot(Mp, +prm%P_nS_neg(1:3,1:3,s))
tauNS(s,4) = math_tensordot(Mp, -prm%P_nS_pos(1:3,1:3,s))
end if
end do
tauNS = tauNS + spread(dst%tau_back(:,en),2,4)
tau = tau + dst%tau_back(:,en)
! edges
call kinetics(v(:,1), dv_dtau(:,1), dv_dtauNS(:,1), &
tau, tauNS(:,1), dst%tau_pass(:,en),1,Temperature, ph)
v(:,2) = v(:,1)
dv_dtau(:,2) = dv_dtau(:,1)
dv_dtauNS(:,2) = dv_dtauNS(:,1)
!screws
if (prm%nonSchmidActive) then
do t = 3,4
call kinetics(v(:,t), dv_dtau(:,t), dv_dtauNS(:,t), &
tau, tauNS(:,t), dst%tau_pass(:,en),2,Temperature, ph)
do s = 1,prm%sum_N_sl
tau(s) = math_tensordot(Mp, prm%P_sl(1:3,1:3,s))
tauNS(s,1) = tau(s)
tauNS(s,2) = tau(s)
if (tau(s) > 0.0_pReal) then
tauNS(s,3) = math_tensordot(Mp, +prm%P_nS_pos(1:3,1:3,s))
tauNS(s,4) = math_tensordot(Mp, -prm%P_nS_neg(1:3,1:3,s))
else
tauNS(s,3) = math_tensordot(Mp, +prm%P_nS_neg(1:3,1:3,s))
tauNS(s,4) = math_tensordot(Mp, -prm%P_nS_pos(1:3,1:3,s))
end if
end do
else
v(:,3:4) = spread(v(:,1),2,2)
dv_dtau(:,3:4) = spread(dv_dtau(:,1),2,2)
dv_dtauNS(:,3:4) = spread(dv_dtauNS(:,1),2,2)
end if
tauNS = tauNS + spread(dst%tau_back(:,en),2,4)
tau = tau + dst%tau_back(:,en)
stt%v(:,en) = pack(v,.true.)
! edges
call kinetics(v(:,1), dv_dtau(:,1), dv_dtauNS(:,1), &
tau, tauNS(:,1), dst%tau_pass(:,en),1,Temperature, ph)
v(:,2) = v(:,1)
dv_dtau(:,2) = dv_dtau(:,1)
dv_dtauNS(:,2) = dv_dtauNS(:,1)
!*** Bauschinger effect
forall (s = 1:prm%sum_N_sl, t = 5:8, rhoSgl(s,t) * v(s,t-4) < 0.0_pReal) &
rhoSgl(s,t-4) = rhoSgl(s,t-4) + abs(rhoSgl(s,t))
!screws
if (prm%nonSchmidActive) then
do t = 3,4
call kinetics(v(:,t), dv_dtau(:,t), dv_dtauNS(:,t), &
tau, tauNS(:,t), dst%tau_pass(:,en),2,Temperature, ph)
end do
else
v(:,3:4) = spread(v(:,1),2,2)
dv_dtau(:,3:4) = spread(dv_dtau(:,1),2,2)
dv_dtauNS(:,3:4) = spread(dv_dtauNS(:,1),2,2)
end if
dot_gamma = sum(rhoSgl(:,1:4) * v, 2) * prm%b_sl
stt%v(:,en) = pack(v,.true.)
Lp = 0.0_pReal
dLp_dMp = 0.0_pReal
do s = 1,prm%sum_N_sl
Lp = Lp + dot_gamma(s) * prm%P_sl(1:3,1:3,s)
forall (i=1:3,j=1:3,k=1:3,l=1:3) &
dLp_dMp(i,j,k,l) = dLp_dMp(i,j,k,l) &
+ prm%P_sl(i,j,s) * prm%P_sl(k,l,s) &
* sum(rhoSgl(s,1:4) * dv_dtau(s,1:4)) * prm%b_sl(s) &
+ prm%P_sl(i,j,s) &
* (+ prm%P_nS_pos(k,l,s) * rhoSgl(s,3) * dv_dtauNS(s,3) &
- prm%P_nS_neg(k,l,s) * rhoSgl(s,4) * dv_dtauNS(s,4)) * prm%b_sl(s)
end do
!*** Bauschinger effect
forall (s = 1:prm%sum_N_sl, t = 5:8, rhoSgl(s,t) * v(s,t-4) < 0.0_pReal) &
rhoSgl(s,t-4) = rhoSgl(s,t-4) + abs(rhoSgl(s,t))
dot_gamma = sum(rhoSgl(:,1:4) * v, 2) * prm%b_sl
do s = 1,prm%sum_N_sl
Lp = Lp + dot_gamma(s) * prm%P_sl(1:3,1:3,s)
forall (i=1:3,j=1:3,k=1:3,l=1:3) &
dLp_dMp(i,j,k,l) = dLp_dMp(i,j,k,l) &
+ prm%P_sl(i,j,s) * prm%P_sl(k,l,s) &
* sum(rhoSgl(s,1:4) * dv_dtau(s,1:4)) * prm%b_sl(s) &
+ prm%P_sl(i,j,s) &
* (+ prm%P_nS_pos(k,l,s) * rhoSgl(s,3) * dv_dtauNS(s,3) &
- prm%P_nS_neg(k,l,s) * rhoSgl(s,4) * dv_dtauNS(s,4)) * prm%b_sl(s)
end do
end associate
@ -871,6 +873,7 @@ module subroutine plastic_nonlocal_deltaState(Mp,ph,en)
dUpperOld, & ! old maximum stable dipole distance for edges and screws
deltaDUpper ! change in maximum stable dipole distance for edges and screws
associate(prm => param(ph),dst => dependentState(ph),del => deltaState(ph))
mu = elastic_mu(ph,en)
@ -1277,7 +1280,7 @@ function rhoDotFlux(timestep,ph,en,ip,el)
!* The entering flux from my neighbor will be distributed on my slip systems according to the
!* compatibility
if (neighbor_n > 0) then
if (phase_plasticity(material_phaseAt(1,neighbor_el)) == PLASTICITY_NONLOCAL_ID .and. &
if (phase_plasticity(material_phaseAt(1,neighbor_el)) == PLASTIC_NONLOCAL_ID .and. &
any(compatibility(:,:,:,n,ip,el) > 0.0_pReal)) then
forall (s = 1:ns, t = 1:4)
@ -1323,7 +1326,7 @@ function rhoDotFlux(timestep,ph,en,ip,el)
!* In case of reduced transmissivity, part of the leaving flux is stored as dead dislocation density.
!* That means for an interface of zero transmissivity the leaving flux is fully converted to dead dislocations.
if (opposite_n > 0) then
if (phase_plasticity(material_phaseAt(1,opposite_el)) == PLASTICITY_NONLOCAL_ID) then
if (phase_plasticity(material_phaseAt(1,opposite_el)) == PLASTIC_NONLOCAL_ID) then
normal_me2neighbor_defConf = math_det33(Favg) &
* matmul(math_inv33(transpose(Favg)),IPareaNormal(1:3,n,ip,el)) ! normal of the interface in (average) deformed configuration (pointing en => neighbor)
@ -1394,78 +1397,79 @@ module subroutine plastic_nonlocal_updateCompatibility(orientation,ph,i,e)
belowThreshold
type(rotation) :: mis
associate(prm => param(ph))
ns = prm%sum_N_sl
ns = prm%sum_N_sl
en = material_phaseMemberAt(1,i,e)
!*** start out fully compatible
my_compatibility = 0.0_pReal
forall(s1 = 1:ns) my_compatibility(:,s1,s1,:) = 1.0_pReal
en = material_phaseMemberAt(1,i,e)
!*** start out fully compatible
my_compatibility = 0.0_pReal
forall(s1 = 1:ns) my_compatibility(:,s1,s1,:) = 1.0_pReal
neighbors: do n = 1,nIPneighbors
neighbor_e = IPneighborhood(1,n,i,e)
neighbor_i = IPneighborhood(2,n,i,e)
neighbor_me = material_phaseMemberAt(1,neighbor_i,neighbor_e)
neighbor_phase = material_phaseAt(1,neighbor_e)
neighbors: do n = 1,nIPneighbors
neighbor_e = IPneighborhood(1,n,i,e)
neighbor_i = IPneighborhood(2,n,i,e)
neighbor_me = material_phaseMemberAt(1,neighbor_i,neighbor_e)
neighbor_phase = material_phaseAt(1,neighbor_e)
if (neighbor_e <= 0 .or. neighbor_i <= 0) then
!* FREE SURFACE
forall(s1 = 1:ns) my_compatibility(:,s1,s1,n) = sqrt(prm%chi_surface)
elseif (neighbor_phase /= ph) then
!* PHASE BOUNDARY
if (plasticState(neighbor_phase)%nonlocal .and. plasticState(ph)%nonlocal) &
forall(s1 = 1:ns) my_compatibility(:,s1,s1,n) = 0.0_pReal
elseif (prm%chi_GB >= 0.0_pReal) then
!* GRAIN BOUNDARY
if (any(dNeq(phase_O_0(ph)%data(en)%asQuaternion(), &
phase_O_0(neighbor_phase)%data(neighbor_me)%asQuaternion())) .and. &
plasticState(neighbor_phase)%nonlocal) &
forall(s1 = 1:ns) my_compatibility(:,s1,s1,n) = sqrt(prm%chi_GB)
else
!* GRAIN BOUNDARY ?
!* Compatibility defined by relative orientation of slip systems:
!* The my_compatibility value is defined as the product of the slip normal projection and the slip direction projection.
!* Its sign is always positive for screws, for edges it has the same sign as the slip normal projection.
!* Since the sum for each slip system can easily exceed one (which would result in a transmissivity larger than one),
!* only values above or equal to a certain threshold value are considered. This threshold value is chosen, such that
!* the number of compatible slip systems is minimized with the sum of the original compatibility values exceeding one.
!* Finally the smallest compatibility value is decreased until the sum is exactly equal to one.
!* All values below the threshold are set to zero.
mis = orientation(ph)%data(en)%misorientation(orientation(neighbor_phase)%data(neighbor_me))
mySlipSystems: do s1 = 1,ns
neighborSlipSystems: do s2 = 1,ns
my_compatibility(1,s2,s1,n) = math_inner(prm%slip_normal(1:3,s1), &
mis%rotate(prm%slip_normal(1:3,s2))) &
* abs(math_inner(prm%slip_direction(1:3,s1), &
mis%rotate(prm%slip_direction(1:3,s2))))
my_compatibility(2,s2,s1,n) = abs(math_inner(prm%slip_normal(1:3,s1), &
mis%rotate(prm%slip_normal(1:3,s2)))) &
* abs(math_inner(prm%slip_direction(1:3,s1), &
mis%rotate(prm%slip_direction(1:3,s2))))
end do neighborSlipSystems
if (neighbor_e <= 0 .or. neighbor_i <= 0) then
!* FREE SURFACE
forall(s1 = 1:ns) my_compatibility(:,s1,s1,n) = sqrt(prm%chi_surface)
elseif (neighbor_phase /= ph) then
!* PHASE BOUNDARY
if (plasticState(neighbor_phase)%nonlocal .and. plasticState(ph)%nonlocal) &
forall(s1 = 1:ns) my_compatibility(:,s1,s1,n) = 0.0_pReal
elseif (prm%chi_GB >= 0.0_pReal) then
!* GRAIN BOUNDARY
if (any(dNeq(phase_O_0(ph)%data(en)%asQuaternion(), &
phase_O_0(neighbor_phase)%data(neighbor_me)%asQuaternion())) .and. &
plasticState(neighbor_phase)%nonlocal) &
forall(s1 = 1:ns) my_compatibility(:,s1,s1,n) = sqrt(prm%chi_GB)
else
!* GRAIN BOUNDARY ?
!* Compatibility defined by relative orientation of slip systems:
!* The my_compatibility value is defined as the product of the slip normal projection and the slip direction projection.
!* Its sign is always positive for screws, for edges it has the same sign as the slip normal projection.
!* Since the sum for each slip system can easily exceed one (which would result in a transmissivity larger than one),
!* only values above or equal to a certain threshold value are considered. This threshold value is chosen, such that
!* the number of compatible slip systems is minimized with the sum of the original compatibility values exceeding one.
!* Finally the smallest compatibility value is decreased until the sum is exactly equal to one.
!* All values below the threshold are set to zero.
mis = orientation(ph)%data(en)%misorientation(orientation(neighbor_phase)%data(neighbor_me))
mySlipSystems: do s1 = 1,ns
neighborSlipSystems: do s2 = 1,ns
my_compatibility(1,s2,s1,n) = math_inner(prm%slip_normal(1:3,s1), &
mis%rotate(prm%slip_normal(1:3,s2))) &
* abs(math_inner(prm%slip_direction(1:3,s1), &
mis%rotate(prm%slip_direction(1:3,s2))))
my_compatibility(2,s2,s1,n) = abs(math_inner(prm%slip_normal(1:3,s1), &
mis%rotate(prm%slip_normal(1:3,s2)))) &
* abs(math_inner(prm%slip_direction(1:3,s1), &
mis%rotate(prm%slip_direction(1:3,s2))))
end do neighborSlipSystems
my_compatibilitySum = 0.0_pReal
belowThreshold = .true.
do while (my_compatibilitySum < 1.0_pReal .and. any(belowThreshold))
thresholdValue = maxval(my_compatibility(2,:,s1,n), belowThreshold) ! screws always positive
nThresholdValues = real(count(my_compatibility(2,:,s1,n) >= thresholdValue),pReal)
where (my_compatibility(2,:,s1,n) >= thresholdValue) belowThreshold = .false.
if (my_compatibilitySum + thresholdValue * nThresholdValues > 1.0_pReal) &
where (abs(my_compatibility(:,:,s1,n)) >= thresholdValue) &
my_compatibility(:,:,s1,n) = sign((1.0_pReal - my_compatibilitySum)/nThresholdValues,&
my_compatibility(:,:,s1,n))
my_compatibilitySum = my_compatibilitySum + nThresholdValues * thresholdValue
end do
my_compatibilitySum = 0.0_pReal
belowThreshold = .true.
do while (my_compatibilitySum < 1.0_pReal .and. any(belowThreshold))
thresholdValue = maxval(my_compatibility(2,:,s1,n), belowThreshold) ! screws always positive
nThresholdValues = real(count(my_compatibility(2,:,s1,n) >= thresholdValue),pReal)
where (my_compatibility(2,:,s1,n) >= thresholdValue) belowThreshold = .false.
if (my_compatibilitySum + thresholdValue * nThresholdValues > 1.0_pReal) &
where (abs(my_compatibility(:,:,s1,n)) >= thresholdValue) &
my_compatibility(:,:,s1,n) = sign((1.0_pReal - my_compatibilitySum)/nThresholdValues,&
my_compatibility(:,:,s1,n))
my_compatibilitySum = my_compatibilitySum + nThresholdValues * thresholdValue
end do
where(belowThreshold) my_compatibility(1,:,s1,n) = 0.0_pReal
where(belowThreshold) my_compatibility(2,:,s1,n) = 0.0_pReal
where(belowThreshold) my_compatibility(1,:,s1,n) = 0.0_pReal
where(belowThreshold) my_compatibility(2,:,s1,n) = 0.0_pReal
end do mySlipSystems
end if
end do mySlipSystems
end if
end do neighbors
end do neighbors
compatibility(:,:,:,:,i,e) = my_compatibility
compatibility(:,:,:,:,i,e) = my_compatibility
end associate
@ -1592,21 +1596,15 @@ subroutine stateInit(ini,phase,Nentries)
stt%rhoSglMobile(s,e) = densityBinning
end do
else ! homogeneous distribution with noise
do e = 1, Nentries
do f = 1,size(ini%N_sl,1)
from = 1 + sum(ini%N_sl(1:f-1))
upto = sum(ini%N_sl(1:f))
do s = from,upto
noise = [math_sampleGaussVar(0.0_pReal, ini%sigma_rho_u), &
math_sampleGaussVar(0.0_pReal, ini%sigma_rho_u)]
stt%rho_sgl_mob_edg_pos(s,e) = ini%rho_u_ed_pos_0(f) + noise(1)
stt%rho_sgl_mob_edg_neg(s,e) = ini%rho_u_ed_neg_0(f) + noise(1)
stt%rho_sgl_mob_scr_pos(s,e) = ini%rho_u_sc_pos_0(f) + noise(2)
stt%rho_sgl_mob_scr_neg(s,e) = ini%rho_u_sc_neg_0(f) + noise(2)
end do
stt%rho_dip_edg(from:upto,e) = ini%rho_d_ed_0(f)
stt%rho_dip_scr(from:upto,e) = ini%rho_d_sc_0(f)
end do
do f = 1,size(ini%N_sl,1)
from = 1 + sum(ini%N_sl(1:f-1))
upto = sum(ini%N_sl(1:f))
call math_normal(stt%rho_sgl_mob_edg_pos(from:upto,:),ini%rho_u_ed_pos_0(f),ini%sigma_rho_u)
call math_normal(stt%rho_sgl_mob_edg_neg(from:upto,:),ini%rho_u_ed_neg_0(f),ini%sigma_rho_u)
call math_normal(stt%rho_sgl_mob_scr_pos(from:upto,:),ini%rho_u_sc_pos_0(f),ini%sigma_rho_u)
call math_normal(stt%rho_sgl_mob_scr_neg(from:upto,:),ini%rho_u_sc_neg_0(f),ini%sigma_rho_u)
stt%rho_dip_edg(from:upto,:) = ini%rho_d_ed_0(f)
stt%rho_dip_scr(from:upto,:) = ini%rho_d_sc_0(f)
end do
end if
@ -1652,53 +1650,55 @@ pure subroutine kinetics(v, dv_dtau, dv_dtauNS, tau, tauNS, tauThreshold, c, T,
criticalStress_P, & !< maximum obstacle strength
criticalStress_S !< maximum obstacle strength
associate(prm => param(ph))
v = 0.0_pReal
dv_dtau = 0.0_pReal
dv_dtauNS = 0.0_pReal
do s = 1,prm%sum_N_sl
if (abs(tau(s)) > tauThreshold(s)) then
associate(prm => param(ph))
!* Peierls contribution
tauEff = max(0.0_pReal, abs(tauNS(s)) - tauThreshold(s))
lambda_P = prm%b_sl(s)
activationVolume_P = prm%w *prm%b_sl(s)**3
criticalStress_P = prm%peierlsStress(s,c)
activationEnergy_P = criticalStress_P * activationVolume_P
tauRel_P = min(1.0_pReal, tauEff / criticalStress_P)
tPeierls = 1.0_pReal / prm%nu_a &
* exp(activationEnergy_P / (K_B * T) &
* (1.0_pReal - tauRel_P**prm%p)**prm%q)
dtPeierls_dtau = merge(tPeierls * prm%p * prm%q * activationVolume_P / (K_B * T) &
* (1.0_pReal - tauRel_P**prm%p)**(prm%q-1.0_pReal) * tauRel_P**(prm%p-1.0_pReal), &
0.0_pReal, &
tauEff < criticalStress_P)
do s = 1,prm%sum_N_sl
if (abs(tau(s)) > tauThreshold(s)) then
! Contribution from solid solution strengthening
tauEff = abs(tau(s)) - tauThreshold(s)
lambda_S = prm%b_sl(s) / sqrt(prm%c_sol)
activationVolume_S = prm%f_sol * prm%b_sl(s)**3 / sqrt(prm%c_sol)
criticalStress_S = prm%Q_sol / activationVolume_S
tauRel_S = min(1.0_pReal, tauEff / criticalStress_S)
tSolidSolution = 1.0_pReal / prm%nu_a &
* exp(prm%Q_sol / (K_B * T)* (1.0_pReal - tauRel_S**prm%p)**prm%q)
dtSolidSolution_dtau = merge(tSolidSolution * prm%p * prm%q * activationVolume_S / (K_B * T) &
* (1.0_pReal - tauRel_S**prm%p)**(prm%q-1.0_pReal)* tauRel_S**(prm%p-1.0_pReal), &
0.0_pReal, &
tauEff < criticalStress_S)
!* Peierls contribution
tauEff = max(0.0_pReal, abs(tauNS(s)) - tauThreshold(s))
lambda_P = prm%b_sl(s)
activationVolume_P = prm%w *prm%b_sl(s)**3
criticalStress_P = prm%peierlsStress(s,c)
activationEnergy_P = criticalStress_P * activationVolume_P
tauRel_P = min(1.0_pReal, tauEff / criticalStress_P)
tPeierls = 1.0_pReal / prm%nu_a &
* exp(activationEnergy_P / (K_B * T) &
* (1.0_pReal - tauRel_P**prm%p)**prm%q)
dtPeierls_dtau = merge(tPeierls * prm%p * prm%q * activationVolume_P / (K_B * T) &
* (1.0_pReal - tauRel_P**prm%p)**(prm%q-1.0_pReal) * tauRel_P**(prm%p-1.0_pReal), &
0.0_pReal, &
tauEff < criticalStress_P)
!* viscous glide velocity
tauEff = abs(tau(s)) - tauThreshold(s)
! Contribution from solid solution strengthening
tauEff = abs(tau(s)) - tauThreshold(s)
lambda_S = prm%b_sl(s) / sqrt(prm%c_sol)
activationVolume_S = prm%f_sol * prm%b_sl(s)**3 / sqrt(prm%c_sol)
criticalStress_S = prm%Q_sol / activationVolume_S
tauRel_S = min(1.0_pReal, tauEff / criticalStress_S)
tSolidSolution = 1.0_pReal / prm%nu_a &
* exp(prm%Q_sol / (K_B * T)* (1.0_pReal - tauRel_S**prm%p)**prm%q)
dtSolidSolution_dtau = merge(tSolidSolution * prm%p * prm%q * activationVolume_S / (K_B * T) &
* (1.0_pReal - tauRel_S**prm%p)**(prm%q-1.0_pReal)* tauRel_S**(prm%p-1.0_pReal), &
0.0_pReal, &
tauEff < criticalStress_S)
!* viscous glide velocity
tauEff = abs(tau(s)) - tauThreshold(s)
v(s) = sign(1.0_pReal,tau(s)) &
/ (tPeierls / lambda_P + tSolidSolution / lambda_S + prm%B /(prm%b_sl(s) * tauEff))
dv_dtau(s) = v(s)**2 * (dtSolidSolution_dtau / lambda_S + prm%B / (prm%b_sl(s) * tauEff**2))
dv_dtauNS(s) = v(s)**2 * dtPeierls_dtau / lambda_P
v(s) = sign(1.0_pReal,tau(s)) &
/ (tPeierls / lambda_P + tSolidSolution / lambda_S + prm%B /(prm%b_sl(s) * tauEff))
dv_dtau(s) = v(s)**2 * (dtSolidSolution_dtau / lambda_S + prm%B / (prm%b_sl(s) * tauEff**2))
dv_dtauNS(s) = v(s)**2 * dtPeierls_dtau / lambda_P
end if
end do
end if
end do
end associate

2
src/phase_thermal.f90
View File

@ -271,7 +271,7 @@ end subroutine thermal_forward
!----------------------------------------------------------------------------------------------
!< @brief Get temperature (for use by non-thermal physics)
!----------------------------------------------------------------------------------------------
module function thermal_T(ph,en) result(T)
pure module function thermal_T(ph,en) result(T)
integer, intent(in) :: ph, en
real(pReal) :: T