return rotation type (ensures proper rotation)
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@ -956,9 +956,9 @@ class Orientation(Rotation):
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"""
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if self.family is None or other.family is None:
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raise ValueError('Missing crystal symmetry')
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raise ValueError('missing crystal symmetry')
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if self.family != other.family:
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raise NotImplementedError('Disorientation between different crystal families not supported yet.')
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raise NotImplementedError('disorientation between different crystal families')
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blend = util.shapeblender(self.shape,other.shape)
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s = self.equivalent
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@ -944,7 +944,7 @@ class Result:
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@staticmethod
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def _add_rotational(F):
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return {
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'data': mechanics.rotational(F['data']),
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'data': mechanics.rotational(F['data']).as_matrix(),
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'label': f"R({F['label']})",
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'meta': {
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'Unit': F['meta']['Unit'],
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@ -61,12 +61,15 @@ class Rotation:
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elif np.array(rotation).shape[-1] == 4:
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self.quaternion = np.array(rotation)
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else:
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raise ValueError('"rotation" is neither a Rotation nor a quaternion')
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raise TypeError('"rotation" is neither a Rotation nor a quaternion')
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def __repr__(self):
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"""Represent rotation as unit quaternion, rotation matrix, and Bunge-Euler angles."""
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return 'As quaternions:\n'+str(self.quaternion) \
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if self == Rotation():
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return 'Rotation()'
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else:
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return f'Quaternions {self.shape}:\n'+str(self.quaternion) \
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if self.quaternion.shape != (4,) else \
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'\n'.join([
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'Quaternion: (real={:.3f}, imag=<{:+.3f}, {:+.3f}, {:+.3f}>)'.format(*(self.quaternion)),
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@ -1,6 +1,7 @@
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"""Finite-strain continuum mechanics."""
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from . import tensor as _tensor
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from . import _rotation
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import numpy as _np
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@ -107,11 +108,11 @@ def rotational(T):
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Returns
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-------
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R : numpy.ndarray of shape (...,3,3)
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Rotational part.
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R : damask.Rotation of shape (...)
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Rotational part of the vector.
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"""
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return _polar_decomposition(T,'R')[0]
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return _rotation.Rotation.from_matrix(_polar_decomposition(T,'R')[0])
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def strain(F,t,m):
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@ -260,7 +261,7 @@ def _polar_decomposition(T,requested):
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output.append(_np.einsum('...ji,...jk',R,T))
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if len(output) == 0:
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raise ValueError('Output needs to be out of V,R,U')
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raise ValueError('output needs to be out of V, R, U')
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return tuple(output)
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@ -265,7 +265,7 @@ class TestResult:
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default.add_rotational('F')
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loc = {'F': default.get_dataset_location('F'),
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'R(F)': default.get_dataset_location('R(F)')}
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in_memory = mechanics.rotational(default.read_dataset(loc['F'],0))
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in_memory = mechanics.rotational(default.read_dataset(loc['F'],0)).as_matrix()
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in_file = default.read_dataset(loc['R(F)'],0)
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assert np.allclose(in_memory,in_file)
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@ -682,6 +682,9 @@ class TestRotation:
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for v,o in zip(vec,ori):
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assert np.allclose(func(v,normalize=True).as_quaternion(),o.as_quaternion())
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def test_invalid_init(self):
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with pytest.raises(TypeError):
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Rotation(np.ones(3))
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@pytest.mark.parametrize('degrees',[True,False])
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def test_Eulers(self,set_of_rotations,degrees):
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@ -831,6 +834,13 @@ class TestRotation:
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with pytest.raises(ValueError):
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function(invalid_shape)
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def test_invalid_shape_parallel(self):
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invalid_a = np.random.random(np.random.randint(8,32,(3)))
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invalid_b = np.random.random(np.random.randint(8,32,(3)))
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with pytest.raises(ValueError):
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Rotation.from_parallel(invalid_a,invalid_b)
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@pytest.mark.parametrize('fr,to',[(Rotation.from_quaternion,'as_quaternion'),
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(Rotation.from_axis_angle,'as_axis_angle'),
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(Rotation.from_Rodrigues_vector, 'as_Rodrigues_vector'),
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@ -3,6 +3,7 @@ import numpy as np
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from damask import tensor
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from damask import mechanics
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from damask import Rotation
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def stress_Cauchy(P,F):
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sigma = 1.0/np.linalg.det(F) * np.dot(P,F.T)
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@ -96,7 +97,6 @@ class TestMechanics:
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@pytest.mark.parametrize('vectorized,single',[(mechanics.maximum_shear, maximum_shear),
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(mechanics.equivalent_stress_Mises, equivalent_stress_Mises),
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(mechanics.equivalent_strain_Mises, equivalent_strain_Mises),
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(mechanics.rotational, rotational),
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(mechanics.stretch_left, stretch_left),
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(mechanics.stretch_right, stretch_right),
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])
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@ -106,6 +106,14 @@ class TestMechanics:
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for i,v in enumerate(np.reshape(vectorized(epsilon_vec),vectorized(epsilon).shape)):
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assert np.allclose(single(epsilon[i]),v)
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def test_vectorize_rotation(self):
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epsilon = Rotation.from_random(self.n).as_matrix()
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epsilon_vec = np.reshape(epsilon,(self.n//10,10,3,3))
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for i,v in enumerate(np.reshape(mechanics.rotational(epsilon_vec).as_matrix(),
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mechanics.rotational(epsilon).as_matrix().shape)):
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assert np.allclose(rotational(epsilon[i]),v)
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@pytest.mark.parametrize('vectorized,single',[(mechanics.stress_Cauchy, stress_Cauchy),
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(mechanics.stress_second_Piola_Kirchhoff, stress_second_Piola_Kirchhoff)
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])
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@ -138,7 +146,7 @@ class TestMechanics:
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def test_polar_decomposition(self):
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"""F = RU = VR."""
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F = np.broadcast_to(np.eye(3),[self.n,3,3])*np.random.rand(self.n,3,3)
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R = mechanics.rotational(F)
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R = mechanics.rotational(F).as_matrix()
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V = mechanics.stretch_left(F)
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U = mechanics.stretch_right(F)
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assert np.allclose(np.matmul(R,U),
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@ -162,7 +170,7 @@ class TestMechanics:
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@pytest.mark.parametrize('t',['V','U'])
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def test_strain_rotation(self,m,t):
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"""Ensure that pure rotation results in no strain."""
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F = mechanics.rotational(np.random.rand(self.n,3,3))
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F = Rotation.from_random(self.n).as_matrix()
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assert np.allclose(mechanics.strain(F,t,m),
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0.0)
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@ -173,7 +181,7 @@ class TestMechanics:
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Should be +1, but random F might contain a reflection.
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"""
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x = np.random.rand(self.n,3,3)
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assert np.allclose(np.abs(np.linalg.det(mechanics.rotational(x))),
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assert np.allclose(np.abs(np.linalg.det(mechanics._polar_decomposition(x,'R')[0])),
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1.0)
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def test_deviatoric_Mises(self):
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@ -203,3 +211,7 @@ class TestMechanics:
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"""Ensure that sherical stress has max shear of 0.0."""
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A = tensor.spherical(tensor.symmetric(np.random.rand(self.n,3,3)),True)
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assert np.allclose(mechanics.maximum_shear(A),0.0)
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def test_invalid_decomposition(self):
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with pytest.raises(ValueError):
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mechanics._polar_decomposition(np.random.rand(10,3,3),'A')
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