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DAMASK_EICMD
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adding compiing support for HDF5

This commit is contained in:
zhangc43 2016-02-19 13:44:46 -05:00
parent 6bd17b3e4e
commit a4e98df35f
1 changed files with 21 additions and 3 deletions
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24
code/Makefile
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@ -16,7 +16,7 @@ SHELL = /bin/sh
# SUFFIX = arbitrary suffix (after file to compile) # SUFFIX = arbitrary suffix (after file to compile)
# STANDARD_CHECK = checking for Fortran 2008, compiler dependend # STANDARD_CHECK = checking for Fortran 2008, compiler dependend
######################################################################################## ########################################################################################
# including PETSc files. PETSC_ARCH is loaded from these files. # including PETSc files. PETSC_ARCH is loaded from these files.
DAMASKVERSION :=$(shell cat ../VERSION) DAMASKVERSION :=$(shell cat ../VERSION)
include ${PETSC_DIR}/lib/petsc/conf/variables include ${PETSC_DIR}/lib/petsc/conf/variables
@ -27,6 +27,17 @@ LIBRARIES := $(PETSC_WITH_EXTERNAL_LIB)
COMPILERNAME ?= $(FC) COMPILERNAME ?= $(FC)
LINKERNAME ?= $(FLINKER) LINKERNAME ?= $(FLINKER)
#
# setting up for HDF5 support (hard link for now)
# 1. Location of HDF5 binaries (with include/ and lib/ underneath)
HDF5 = /mnt/research/CMM/opt/hdf5-1.8.16
# 2. Location of External Libraries (missing in the 1.8.12 version)
LIBZ = $(HDF5)/lib/libz.a
LIBSZ = $(HDF5)/lib/libsz.a
# 3. Set libraries for HDF5 (LIBS: shared lib, LIBZ: external lib)
HDFLIBS = -I$(HDF5)/include $(HDF5)/lib/libhdf5_fortran.a $(HDF5)/lib/libhdf5.a
HDFLIBZ = $(LIBZ) $(LIBSZ) -lm
# MPI compiler wrappers will tell if they are pointing to ifort or gfortran # MPI compiler wrappers will tell if they are pointing to ifort or gfortran
COMPILEROUT :=$(shell $(FC) -show) COMPILEROUT :=$(shell $(FC) -show)
# search in FC or COMPILEROUT for gfortran/ifort if not defined # search in FC or COMPILEROUT for gfortran/ifort if not defined
@ -331,6 +342,9 @@ HYDROGENFLUX_FILES = \
HOMOGENIZATION_FILES = \ HOMOGENIZATION_FILES = \
homogenization_RGC.o homogenization_isostrain.o homogenization_none.o homogenization_RGC.o homogenization_isostrain.o homogenization_none.o
HDF5_FILES = \
damask_hdf5.o
##################### #####################
# Spectral Solver # Spectral Solver
##################### #####################
@ -358,12 +372,13 @@ SPECTRAL_FILES = prec.o DAMASK_interface.o IO.o libs.o numerics.o debug.o math.o
$(HOMOGENIZATION_FILES) homogenization.o \ $(HOMOGENIZATION_FILES) homogenization.o \
CPFEM2.o \ CPFEM2.o \
spectral_utilities.o \ spectral_utilities.o \
$(HDF5_FILES) \
$(SPECTRAL_SOLVER_FILES) $(SPECTRAL_SOLVER_FILES)
DAMASK_spectral.exe: DAMASK_spectral.o DAMASK_spectral.exe: DAMASK_spectral.o
$(PREFIX) $(LINKERNAME) $(OPENMP_FLAG_$(F90)) $(LINK_OPTIONS_$(F90)) $(STANDARD_CHECK_$(F90)) $(OPTIMIZATION_$(MAXOPTI)_$(F90)) \ $(PREFIX) $(LINKERNAME) $(OPENMP_FLAG_$(F90)) $(LINK_OPTIONS_$(F90)) $(STANDARD_CHECK_$(F90)) $(OPTIMIZATION_$(MAXOPTI)_$(F90)) \
-o DAMASK_spectral.exe DAMASK_spectral.o \ -o DAMASK_spectral.exe DAMASK_spectral.o \
$(SPECTRAL_FILES) $(LIBRARIES) $(SUFFIX) $(SPECTRAL_FILES) $(LIBRARIES) $(HDFLIBS) $(HDFLIBZ) $(SUFFIX)
DAMASK_spectral.o: DAMASK_spectral.f90 \ DAMASK_spectral.o: DAMASK_spectral.f90 \
@ -412,7 +427,7 @@ FEM_FILES = prec.o DAMASK_interface.o FEZoo.o IO.o libs.o numerics.o debug.
DAMASK_FEM.exe: DAMASK_FEM_driver.o DAMASK_FEM.exe: DAMASK_FEM_driver.o
$(PREFIX) $(LINKERNAME) $(OPENMP_FLAG_$(F90)) $(LINK_OPTIONS_$(F90)) $(STANDARD_CHECK_$(F90)) $(OPTIMIZATION_$(MAXOPTI)_$(F90)) \ $(PREFIX) $(LINKERNAME) $(OPENMP_FLAG_$(F90)) $(LINK_OPTIONS_$(F90)) $(STANDARD_CHECK_$(F90)) $(OPTIMIZATION_$(MAXOPTI)_$(F90)) \
-o DAMASK_FEM.exe DAMASK_FEM_driver.o \ -o DAMASK_FEM.exe DAMASK_FEM_driver.o \
$(FEM_FILES) $(LIBRARIES) $(SUFFIX) $(FEM_FILES) $(LIBRARIES) $(HDFLIBS) $(HDFLIBZ) $(SUFFIX)
DAMASK_FEM_driver.o: DAMASK_FEM_driver.f90 $(FEM_SOLVER_FILES) DAMASK_FEM_driver.o: DAMASK_FEM_driver.f90 $(FEM_SOLVER_FILES)
$(PREFIX) $(COMPILERNAME) $(COMPILE_MAXOPTI) -c ../private/FEM/code/DAMASK_FEM_driver.f90 $(SUFFIX) $(PREFIX) $(COMPILERNAME) $(COMPILE_MAXOPTI) -c ../private/FEM/code/DAMASK_FEM_driver.f90 $(SUFFIX)
@ -649,6 +664,9 @@ prec.o: prec.f90
$(PREFIX) $(COMPILERNAME) $(COMPILE) -c prec.f90 $(SUFFIX) $(PREFIX) $(COMPILERNAME) $(COMPILE) -c prec.f90 $(SUFFIX)
endif endif
damask_hdf5.o: damask_hdf5.f90
$(PREFIX) $(COMPILERNAME) $(COMPILE) -c damask_hdf5.f90 $(HDFLIBS) $(HDFLIBZ)
%.o : %.f90 %.o : %.f90
$(PREFIX) $(COMPILERNAME) $(COMPILE) -c $< $(SUFFIX) $(PREFIX) $(COMPILERNAME) $(COMPILE) -c $< $(SUFFIX)