encode/decode for h5py3 not needed anymore
attribute values with variable-length strings will be interpreted as str, not bytes
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@ -21,6 +21,7 @@ from . import grid_filters
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from . import mechanics
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from . import mechanics
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from . import util
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from . import util
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h5py3 = h5py.__version__[0] == '3'
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class Result:
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class Result:
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"""
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"""
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@ -280,7 +281,8 @@ class Result:
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for path_old in self.get_dataset_location(name_old):
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for path_old in self.get_dataset_location(name_old):
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path_new = os.path.join(os.path.dirname(path_old),name_new)
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path_new = os.path.join(os.path.dirname(path_old),name_new)
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f[path_new] = f[path_old]
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f[path_new] = f[path_old]
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f[path_new].attrs['Renamed'] = 'Original name: {}'.encode()
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f[path_new].attrs['Renamed'] = f'Original name: {name_old}' if h5py3 else \
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f'Original name: {name_old}'.decode()
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del f[path_old]
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del f[path_old]
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else:
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else:
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raise PermissionError('Rename operation not permitted')
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raise PermissionError('Rename operation not permitted')
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@ -422,8 +424,13 @@ class Result:
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for d in f[group].keys():
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for d in f[group].keys():
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try:
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try:
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dataset = f['/'.join([group,d])]
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dataset = f['/'.join([group,d])]
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unit = f" / {dataset.attrs['Unit'].decode()}" if 'Unit' in dataset.attrs else ''
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if 'Unit' in dataset.attrs:
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description = dataset.attrs['Description'].decode()
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unit = f" / {dataset.attrs['Unit']}" if h5py3 else \
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f" / {dataset.attrs['Unit'].decode()}"
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else:
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unit = ''
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description = dataset.attrs['Description'] if h5py3 else \
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dataset.attrs['Description'].decode()
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message += f' {d}{unit}: {description}\n'
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message += f' {d}{unit}: {description}\n'
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except KeyError:
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except KeyError:
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pass
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pass
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@ -1035,7 +1042,7 @@ class Result:
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loc = f[group+'/'+label]
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loc = f[group+'/'+label]
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datasets_in[arg]={'data' :loc[()],
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datasets_in[arg]={'data' :loc[()],
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'label':label,
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'label':label,
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'meta': {k:v.decode() for k,v in loc.attrs.items()}}
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'meta': {k:(v if h5py3 else v.decode()) for k,v in loc.attrs.items()}}
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lock.release()
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lock.release()
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r = func(**datasets_in,**args)
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r = func(**datasets_in,**args)
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return [group,r]
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return [group,r]
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@ -1080,17 +1087,21 @@ class Result:
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if self._allow_modification and result[0]+'/'+result[1]['label'] in f:
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if self._allow_modification and result[0]+'/'+result[1]['label'] in f:
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dataset = f[result[0]+'/'+result[1]['label']]
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dataset = f[result[0]+'/'+result[1]['label']]
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dataset[...] = result[1]['data']
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dataset[...] = result[1]['data']
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dataset.attrs['Overwritten'] = 'Yes'.encode()
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dataset.attrs['Overwritten'] = 'Yes' if h5py3 else \
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'Yes'.encode()
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else:
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else:
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dataset = f[result[0]].create_dataset(result[1]['label'],data=result[1]['data'])
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dataset = f[result[0]].create_dataset(result[1]['label'],data=result[1]['data'])
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now = datetime.datetime.now().astimezone()
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now = datetime.datetime.now().astimezone()
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dataset.attrs['Created'] = now.strftime('%Y-%m-%d %H:%M:%S%z').encode()
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dataset.attrs['Created'] = now.strftime('%Y-%m-%d %H:%M:%S%z') if h5py3 else \
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now.strftime('%Y-%m-%d %H:%M:%S%z').encode()
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for l,v in result[1]['meta'].items():
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for l,v in result[1]['meta'].items():
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dataset.attrs[l]=v.encode()
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dataset.attrs[l]=v if h5py3 else v.encode()
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creator = f"damask.Result.{dataset.attrs['Creator'].decode()} v{damask.version}"
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creator = dataset.attrs['Creator'] if h5py3 else \
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dataset.attrs['Creator'] = creator.encode()
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dataset.attrs['Creator'].decode()
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dataset.attrs['Creator'] = f"damask.Result.{creator} v{damask.version}" if h5py3 else \
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f"damask.Result.{creator} v{damask.version}".encode()
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except (OSError,RuntimeError) as err:
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except (OSError,RuntimeError) as err:
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print(f'Could not add dataset: {err}.')
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print(f'Could not add dataset: {err}.')
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@ -296,7 +296,11 @@ class TestResult:
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default.add_Cauchy()
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default.add_Cauchy()
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loc = default.get_dataset_location('sigma')
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loc = default.get_dataset_location('sigma')
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with h5py.File(default.fname,'r') as f:
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with h5py.File(default.fname,'r') as f:
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# h5py3 compatibility
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try:
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created_first = f[loc[0]].attrs['Created'].decode()
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created_first = f[loc[0]].attrs['Created'].decode()
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except AttributeError:
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created_first = f[loc[0]].attrs['Created']
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created_first = datetime.strptime(created_first,'%Y-%m-%d %H:%M:%S%z')
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created_first = datetime.strptime(created_first,'%Y-%m-%d %H:%M:%S%z')
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if overwrite == 'on':
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if overwrite == 'on':
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@ -307,7 +311,11 @@ class TestResult:
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time.sleep(2.)
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time.sleep(2.)
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default.add_calculation('sigma','#sigma#*0.0+311.','not the Cauchy stress')
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default.add_calculation('sigma','#sigma#*0.0+311.','not the Cauchy stress')
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with h5py.File(default.fname,'r') as f:
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with h5py.File(default.fname,'r') as f:
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# h5py3 compatibility
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try:
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created_second = f[loc[0]].attrs['Created'].decode()
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created_second = f[loc[0]].attrs['Created'].decode()
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except AttributeError:
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created_second = f[loc[0]].attrs['Created']
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created_second = datetime.strptime(created_second,'%Y-%m-%d %H:%M:%S%z')
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created_second = datetime.strptime(created_second,'%Y-%m-%d %H:%M:%S%z')
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if overwrite == 'on':
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if overwrite == 'on':
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assert created_first < created_second and np.allclose(default.read_dataset(loc),311.)
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assert created_first < created_second and np.allclose(default.read_dataset(loc),311.)
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