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DAMASK_EICMD
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default to 0–1 for z range

This commit is contained in:
Philip Eisenlohr 2015-09-29 22:35:57 +00:00
parent 21bcafe3e4
commit a2a7664e8e
1 changed files with 8 additions and 10 deletions
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8
processing/pre/seeds_fromPokes.py
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@ -42,13 +42,13 @@ parser.add_option('-p','--position',
parser.set_defaults(x = False, parser.set_defaults(x = False,
y = False, y = False,
z = [0.0,1.0],
N = 16, N = 16,
position = 'pos', position = 'pos',
) )
(options,filenames) = parser.parse_args() (options,filenames) = parser.parse_args()
if options.z == None: parser.error('please specify top and bottom z plane...')
# --- loop over output files ------------------------------------------------------------------------- # --- loop over output files -------------------------------------------------------------------------
if filenames == []: filenames = [None] if filenames == []: filenames = [None]
@ -61,7 +61,6 @@ for name in filenames:
except: continue except: continue
damask.util.report(scriptName,name) damask.util.report(scriptName,name)
print os.path.splitext(name)[-1]+'_poked_{}.seeds'.format(options.N)
# --- interpret header ---------------------------------------------------------------------------- # --- interpret header ----------------------------------------------------------------------------
table.head_read() table.head_read()
@ -95,13 +94,13 @@ for name in filenames:
Nx = int(options.N/math.sqrt(options.N*info['size'][1]/info['size'][0])) Nx = int(options.N/math.sqrt(options.N*info['size'][1]/info['size'][0]))
Ny = int(options.N/math.sqrt(options.N*info['size'][0]/info['size'][1])) Ny = int(options.N/math.sqrt(options.N*info['size'][0]/info['size'][1]))
Nz = int((max(options.z)-min(options.z))/info['size'][2]*info['grid'][2]) Nz = int((max(options.z)-min(options.z))/info['size'][2]*info['grid'][2])
offset = int(min(options.z)/info['size'][2]*info['grid'][2]) # offset due to lower z-plane
damask.util.croak('poking {} x {} x {}...'.format(Nx,Ny,Nz)) damask.util.croak('poking {} x {} x {}...'.format(Nx,Ny,Nz))
seeds = np.zeros((Nx*Ny*Nz,4),'d') seeds = np.zeros((Nx*Ny*Nz,4),'d')
grid = np.zeros(3,'i') grid = np.zeros(3,'i')
offset = min(options.z)/info['size'][2]*info['grid'][2] # offset due to lower z-plane
n = 0 n = 0
for i in xrange(Nx): for i in xrange(Nx):
grid[0] = round((i+0.5)*info['grid'][0]/Nx-0.5) grid[0] = round((i+0.5)*info['grid'][0]/Nx-0.5)
@ -110,8 +109,7 @@ for name in filenames:
for k in xrange(Nz): for k in xrange(Nz):
grid[2] = offset + k grid[2] = offset + k
grid %= info['grid'] grid %= info['grid']
coordinates = (0.5+grid)*info['size']/info['grid'] seeds[n,0:3] = (0.5+grid)/info['grid'] # normalize coordinates to box
seeds[n,0:3] = coordinates/info['size'] # normalize coordinates to box
seeds[n, 3] = microstructure[grid[0],grid[1],grid[2]] seeds[n, 3] = microstructure[grid[0],grid[1],grid[2]]
if options.x: grid[0] += 1 if options.x: grid[0] += 1
if options.y: grid[1] += 1 if options.y: grid[1] += 1