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DAMASK_EICMD
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grid and size for vicinityOffset, small changes for other scripts

This commit is contained in:
Martin Diehl 2013-04-25 16:51:32 +00:00
parent 5d8664e230
commit a003d14824
3 changed files with 60 additions and 40 deletions
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2
processing/pre/geom_check.py
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@ -150,7 +150,7 @@ for file in files:
info = {'grid': [0,0,0], info = {'grid': [0,0,0],
'size': [0.0,0.0,0.0], 'size': [0.0,0.0,0.0],
'origin': [0.0,0.0,0.0], 'origin': [0.0,0.0,0.0],
'homogenization': 1, 'homogenization': 0,
'microstructures': 0, 'microstructures': 0,
} }

2
processing/pre/geom_fromVoronoiTessellation.py
View File

@ -95,7 +95,7 @@ for file in files:
m = re.search('(\d+)\s*head', firstline.lower()) m = re.search('(\d+)\s*head', firstline.lower())
if m: if m:
headerlines = int(m.group(1)) headerlines = int(m.group(1))
headers = [firstline]+[file['input'].readline() for i in range(headerlines)] headers = [file['input'].readline() for i in range(headerlines)]
else: else:
headerlines = 1 headerlines = 1
headers = firstline headers = firstline

96
processing/pre/geom_vicinityOffset.py
View File

@ -27,15 +27,16 @@ class extendedOption(Option):
# ----------------------- MAIN ------------------------------- # ----------------------- MAIN -------------------------------
identifiers = { identifiers = {
'resolution': ['a','b','c'], 'grid': ['a','b','c'],
'dimension': ['x','y','z'], 'size': ['x','y','z'],
'origin': ['x','y','z'], 'origin': ['x','y','z'],
} }
mappings = { mappings = {
'resolution': lambda x: int(x), 'grid': lambda x: int(x),
'dimension': lambda x: float(x), 'size': lambda x: float(x),
'origin': lambda x: float(x), 'origin': lambda x: float(x),
'homogenization': lambda x: int(x), 'homogenization': lambda x: int(x),
'microstructures': lambda x: int(x),
} }
@ -47,8 +48,8 @@ i.e. within the region close to a grain/phase boundary.
parser.add_option('-v', '--vicinity', dest='vicinity', type='int', \ parser.add_option('-v', '--vicinity', dest='vicinity', type='int', \
help='voxel distance checked for presence of other microstructure [%default]') help='voxel distance checked for presence of other microstructure [%default]')
parser.add_option('-o', '--offset', dest='offset', type='int', \ parser.add_option('-m', '--microstructureoffset', dest='offset', type='int', \
help='integer offset for tagged microstructure [%default]') help='integer offset for tagged microstructure [autodetect]')
parser.add_option('-2', '--twodimensional', dest='twoD', action='store_true', \ parser.add_option('-2', '--twodimensional', dest='twoD', action='store_true', \
help='output geom file with two-dimensional data arrangement') help='output geom file with two-dimensional data arrangement')
@ -88,7 +89,7 @@ for file in files:
m = re.search('(\d+)\s*head', firstline.lower()) m = re.search('(\d+)\s*head', firstline.lower())
if m: if m:
headerlines = int(m.group(1)) headerlines = int(m.group(1))
headers = [firstline]+[file['input'].readline() for i in range(headerlines)] headers = [file['input'].readline() for i in range(headerlines)]
else: else:
headerlines = 1 headerlines = 1
headers = firstline headers = firstline
@ -96,15 +97,20 @@ for file in files:
content = file['input'].readlines() content = file['input'].readlines()
file['input'].close() file['input'].close()
info = {'resolution': numpy.array([0,0,0]), info = {
'dimension': numpy.array([0.0,0.0,0.0]), 'grid': numpy.zeros(3,'i'),
'origin': numpy.array([0.0,0.0,0.0]), 'size': numpy.zeros(3,'d'),
'homogenization': 1, 'origin': numpy.zeros(3,'d'),
} 'microstructures': 0,
'homogenization': 0
}
new_header = [] new_header = []
new_header.append('$Id$\n')
for header in headers: for header in headers:
headitems = map(str.lower,header.split()) headitems = map(str.lower,header.split())
if headitems[0] == 'resolution': headitems[0] = 'grid'
if headitems[0] == 'dimension': headitems[0] = 'size'
if headitems[0] in mappings.keys(): if headitems[0] in mappings.keys():
if headitems[0] in identifiers.keys(): if headitems[0] in identifiers.keys():
for i in xrange(len(identifiers[headitems[0]])): for i in xrange(len(identifiers[headitems[0]])):
@ -112,36 +118,40 @@ for file in files:
mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1]) mappings[headitems[0]](headitems[headitems.index(identifiers[headitems[0]][i])+1])
else: else:
info[headitems[0]] = mappings[headitems[0]](headitems[1]) info[headitems[0]] = mappings[headitems[0]](headitems[1])
else:
new_header.append(header)
if numpy.all(info['resolution'] == 0): if numpy.all(info['grid'] == 0):
file['croak'].write('no resolution info found.\n') file['croak'].write('no grid info found.\n')
continue continue
if numpy.all(info['dimension'] == 0.0): if numpy.all(info['size'] == 0.0):
file['croak'].write('no dimension info found.\n') file['croak'].write('no dimension info found.\n')
continue continue
file['croak'].write('resolution: %s\n'%(' x '.join(map(str,info['resolution']))) + \ file['croak'].write('-- input --\n' +\
'dimension: %s\n'%(' x '.join(map(str,info['dimension']))) + \ 'grid a b c: %s\n'%(' x '.join(map(str,info['grid']))) + \
'origin: %s\n'%(' : '.join(map(str,info['origin']))) + \ 'size x y z: %s\n'%(' x '.join(map(str,info['size']))) + \
'homogenization: %i\n'%info['homogenization']) 'origin x y z: %s\n'%(' : '.join(map(str,info['origin']))) + \
'homogenization: %i\n'%info['homogenization'] + \
'microstructures: %i\n'%info['microstructures'])
microstructure = numpy.zeros(info['resolution'],'i') microstructure = numpy.zeros(info['grid'],'i')
i = 0 i = 0
for line in content: for line in content:
for item in map(int,line.split()): for item in map(int,line.split()):
microstructure[i%info['resolution'][0], microstructure[i%info['grid'][0],
(i/info['resolution'][0])%info['resolution'][1], (i/info['grid'][0])%info['grid'][1],
i/info['resolution'][0] /info['resolution'][1]] = item i/info['grid'][0] /info['grid'][1]] = item
i += 1 i += 1
formatwidth = 1+int(math.floor(math.log10(abs(microstructure.max()+options.offset))))
if options.offset == 0: if options.offset == 0:
options.offset = microstructure.max() options.offset = microstructure.max()
file['croak'].write('offset: %i\n'%options.offset) formatwidth = 1+int(math.floor(math.log10(abs(microstructure.max()+options.offset))))
for x in xrange(info['resolution'][0]): for x in xrange(info['grid'][0]):
for y in xrange(info['resolution'][1]): for y in xrange(info['grid'][1]):
for z in xrange(info['resolution'][2]): for z in xrange(info['grid'][2]):
me = microstructure[x,y,z] me = microstructure[x,y,z]
breaker = False breaker = False
@ -150,7 +160,7 @@ for file in files:
for dy in xrange(-options.vicinity,options.vicinity+1): for dy in xrange(-options.vicinity,options.vicinity+1):
for dz in xrange(-options.vicinity,options.vicinity+1): for dz in xrange(-options.vicinity,options.vicinity+1):
they = microstructure[(x+dx)%info['resolution'][0],(y+dy)%info['resolution'][1],(z+dz)%info['resolution'][2]] they = microstructure[(x+dx)%info['grid'][0],(y+dy)%info['grid'][1],(z+dz)%info['grid'][2]]
if they != me and they != me+options.offset: # located alien microstructure in vicinity if they != me and they != me+options.offset: # located alien microstructure in vicinity
microstructure[x,y,z] += options.offset # tag myself as close to aliens! microstructure[x,y,z] += options.offset # tag myself as close to aliens!
breaker = True breaker = True
@ -160,15 +170,25 @@ for file in files:
if breaker: break if breaker: break
info['microstructures'] = microstructure.max()
# ------------------------------------------ assemble header --------------------------------------- file['croak'].write('-- output --\n' +\
'microstructures: %i\n'%info['microstructures'])
# ------------------------------------------ assemble header ---------------------------------------
new_header.append("grid\ta %i\tb %i\tc %i\n"%(info['grid'][0],info['grid'][1],info['grid'][2]))
new_header.append("size\tx %f\ty %f\tz %f\n"%(info['size'][0],info['size'][1],info['size'][0]))
new_header.append("origin\tx %f\ty %f\tz %f\n"%(info['origin'][0],info['origin'][1],info['origin'][2]))
new_header.append("microstructures\t%i\n"%info['microstructures'])
new_header.append("homogenization\t%i\n"%info['homogenization'])
output = '%i\theader\n'%(len(new_header))
output += ''.join(new_header)
output = ''.join(headers)
# ------------------------------------- regenerate texture information ---------------------------------- # ------------------------------------- regenerate texture information ----------------------------------
for z in xrange(info['resolution'][2]): for z in xrange(info['grid'][2]):
for y in xrange(info['resolution'][1]): for y in xrange(info['grid'][1]):
output += {True:' ',False:'\n'}[options.twoD].join(map(lambda x: str(x).rjust(formatwidth), microstructure[:,y,z])) + '\n' output += {True:' ',False:'\n'}[options.twoD].join(map(lambda x: str(x).rjust(formatwidth), microstructure[:,y,z])) + '\n'
output += '\n' output += '\n'