cleaning

examples/config/phase/mechanical/elastic/Hooke_Al.yaml

@@ -3,7 +3,7 @@ Al:
   mechanical:
     elastic:
       type: Hooke
-      references: 
+      references:
         - J. Vallin et al.,
           Journal of Applied Physics 35(6), 1825-1826, 1964,
           https://doi.org/10.1063/1.1713749

examples/config/phase/mechanical/elastic/Hooke_Au.yaml

@@ -3,7 +3,7 @@ Au:
   mechanical:
     elastic:
       type: Hooke
-      references: 
+      references:
         - J.P. Hirth and J. Lothe,
           Theory of Dislocations, 1982,
           John Wiley & Sons

examples/config/phase/mechanical/elastic/Hooke_Ni.yaml

@@ -3,7 +3,7 @@ Ni:
   mechanical:
     elastic:
       type: Hooke
-      references: 
+      references:
         - J.P. Hirth and J. Lothe,
           Theory of Dislocations, 1982,
           John Wiley & Sons

examples/config/phase/mechanical/elastic/Hooke_cpTi.yaml

@@ -2,9 +2,9 @@ cpTi:
   lattice: hP
   c/a: 1.587
   mechanical:
-    elastic: 
+    elastic:
       type: Hooke
-      references: 
+      references:
         - L. Wang et al.,
           Acta Materialia 132, 598-610, 2017,
           https://doi.org/10.1016/j.actamat.2017.05.015

processing/pre/mentat_pbcOnBoxMesh.py

@@ -76,10 +76,10 @@ def asMFD(mfd_data):
           elif type(num) == float:
             result += '{:20.12e}'.format(num)
           else:
-            damask.util.croak('WARNING: encountered unknown type: ' + str(type(el)))
+            print(f'WARNING: encountered unknown type: {type(el)}')
         result += '\n'
       else:
-        damask.util.croak('WARNING: encountered unknown type: ' + str(type(el)))
+        print(f'WARNING: encountered unknown type: {type(el)}')
     if section['uid'] > 0:
       result += '=end=\n'
   return result.strip()
@@ -244,9 +244,9 @@ if remote:
     py_mentat.py_send('*save_as_model "{}" yes'.format(filenames[0]))
     py_mentat.py_get_int("nnodes()")
   except py_mentat.InputError as err:
-    damask.util.croak('{}. Try Tools/Python/"Run as Separate Process" & "Initiate".'.format(err))
+    print(f'{err}. Try Tools/Python/"Run as Separate Process" & "Initiate".')
     sys.exit(-1)
-  damask.util.croak( 'connected...')
+  print( 'connected...')
 
 for name in filenames:
   while remote and not os.path.exists(name): time.sleep(0.5)

python/damask/__init__.py

@@ -33,9 +33,6 @@ from ._configmaterial  import ConfigMaterial   # noqa
 from ._grid            import Grid             # noqa
 from ._result          import Result           # noqa
 
-
-
 # deprecated
 from ._asciitable  import ASCIItable       # noqa
 from ._test        import Test             # noqa
-from .util         import extendableOption # noqa

python/damask/_test.py

@@ -53,8 +53,7 @@ class Test:
 
     self.dirBase = os.path.dirname(os.path.realpath(sys.modules[self.__class__.__module__].__file__))
 
-    self.parser = OptionParser(option_class=damask.extendableOption,
+    self.parser = OptionParser(description = f'{self.description} (Test class version: {damask.version})',
-                               description = f'{self.description} (Test class version: {damask.version})',
                                usage = './test.py [options]')
     self.parser.add_option("-k", "--keep",
                            action = "store_true",
@@ -70,7 +69,6 @@ class Test:
                            help   = "show all test variants without actual calculation")
     self.parser.add_option("-s",   "--select",
                            dest   = "select",
-                           action = 'extend', metavar = '<string LIST>',
                            help   = "run test(s) of given name only")
     self.parser.set_defaults(keep   = self.keep,
                              accept = self.accept,

python/damask/util.py

@@ -6,7 +6,6 @@ import shlex
 import re
 import fractions
 from functools import reduce
-from optparse import Option
 
 import numpy as np
 import h5py
@@ -16,7 +15,6 @@ from . import version
 # limit visibility
 __all__=[
          'srepr',
-         'croak',
          'report',
          'emph','deemph','warn','strikeout',
          'execute',
@@ -25,7 +23,6 @@ __all__=[
          'project_stereographic',
          'hybrid_IA',
          'return_message',
-         'extendableOption',
          'execution_stamp',
          'shapeshifter', 'shapeblender',
          'extend_docstring', 'extended_docstring',
@@ -54,25 +51,6 @@ def srepr(arg,glue = '\n'):
     return arg if isinstance(arg,str) else repr(arg)
 
 
-def croak(what, newline = True):
-    """
-    Write formated to stderr.
-
-    DEPRECATED
-
-    Parameters
-    ----------
-    what : str or iterable
-        Content to be displayed.
-    newline : bool, optional
-        Separate items of what by newline. Defaults to True.
-
-    """
-    if what is not None:
-        sys.stderr.write(srepr(what,glue = '\n') + ('\n' if newline else ''))
-    sys.stderr.flush()
-
-
 def report(who = None,
            what = None):
     """
@@ -81,7 +59,7 @@ def report(who = None,
     DEPRECATED
 
     """
-    croak( (emph(who)+': ' if who is not None else '') + (what if what is not None else '') + '\n' )
+    print( (emph(who)+': ' if who is not None else '') + (what if what is not None else '') + '\n' )
 
 
 def emph(what):
@@ -428,27 +406,6 @@ def DREAM3D_cell_data_group(fname):
 ####################################################################################################
 # Classes
 ####################################################################################################
-class extendableOption(Option):
-    """
-    Used for definition of new option parser action 'extend', which enables to take multiple option arguments.
-
-    Adopted from online tutorial http://docs.python.org/library/optparse.html
-    DEPRECATED
-    """
-
-    ACTIONS = Option.ACTIONS + ("extend",)
-    STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
-    TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
-    ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)
-
-    def take_action(self, action, dest, opt, value, values, parser):
-        if action == "extend":
-            lvalue = value.split(",")
-            values.ensure_value(dest, []).extend(lvalue)
-        else:
-            Option.take_action(self, action, dest, opt, value, values, parser)
-
-
 class _ProgressBar:
     """
     Report progress of an interation as a status bar.

python/tests/test_util.py

@@ -23,9 +23,6 @@ class TestUtil:
         with pytest.raises(RuntimeError):
             util.execute('/bin/false')
 
-    def test_croak(self):
-        util.croak('Burp!')
-
     @pytest.mark.parametrize('input,output',
                             [
                             ([0,-2],[0,-1]),