Merged branch development into development

This commit is contained in:
Philip Eisenlohr 2016-07-24 19:19:03 -04:00
commit 99963ca1dd
86 changed files with 175 additions and 175 deletions

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v2.0.0-350-g7d84b99
v2.0.0-396-g03bb0b8

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys
@ -40,7 +40,7 @@ for version in MarcReleases:
os.remove(sym_link)
sys.stdout.write(sym_link)
else:
sys.stdout.write(damask.util.bcolors.BOLD + sym_link + damask.util.bcolors.ENDC)
sys.stdout.write(damask.util.emph(sym_link))
os.symlink(src,sym_link)
sys.stdout.write(' -> '+src+'\n')

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
# Makes postprocessing routines acessible from everywhere.
@ -29,7 +29,7 @@ for subDir in processing_subDirs:
os.remove(sym_link)
sys.stdout.write(sym_link)
else:
sys.stdout.write(damask.util.bcolors.BOLD + sym_link + damask.util.bcolors.ENDC)
sys.stdout.write(damask.util.emph(sym_link))
os.symlink(src,sym_link)
sys.stdout.write(' -> '+src+'\n')

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,string,scipy

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,string,vtk

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import threading,time,os

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,re,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,itertools

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,time,copy

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,re,sys,fnmatch

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import sys,os

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math,re,time,struct
@ -18,7 +18,7 @@ fileExtensions = { \
# -----------------------------
class vector: # mimic py_post node object
x,y,z = [None,None,None]
def __init__(self,coords):
self.x = coords[0]
self.y = coords[1]
@ -102,7 +102,7 @@ class MPIEspectral_result: # mimic py_post result object
self._frequencies = self._keyedPackedArray('frequencies:',count=self.N_loadcases,type='i')
if all ( i is None for i in self._frequencies):
self._frequencies = self._keyedPackedArray('frequencies',count=self.N_loadcases,type='i')
self._increments = self._keyedPackedArray('increments:',count=self.N_loadcases,type='i')
if all (i is None for i in self._increments):
self._increments = self._keyedPackedArray('increments',count=self.N_loadcases,type='i')
@ -111,7 +111,7 @@ class MPIEspectral_result: # mimic py_post result object
if self.startingIncrement is None:
self.startingIncrement = self._keyedPackedArray('startingIncrement',count=1,type='i')[0]
self._times = self._keyedPackedArray('times:',count=self.N_loadcases,type='d')
if all (i is None for i in self._times):
self._times = self._keyedPackedArray('times',count=self.N_loadcases,type='d')
@ -119,15 +119,15 @@ class MPIEspectral_result: # mimic py_post result object
self._logscales = self._keyedPackedArray('logscales:',count=self.N_loadcases,type='i')
if all (i is None for i in self._logscales):
self._logscales = self._keyedPackedArray('logscales',count=self.N_loadcases,type='i')
self.size = self._keyedPackedArray('size:',count=3,type='d')
if self.size == [None,None,None]: # no 'size' found, try legacy alias 'dimension'
self.size = self._keyedPackedArray('dimension',count=3,type='d')
self.grid = self._keyedPackedArray('grid:',count=3,type='i')
if self.grid == [None,None,None]: # no 'grid' found, try legacy alias 'resolution'
self.grid = self._keyedPackedArray('resolution',count=3,type='i')
self.N_nodes = (self.grid[0]+1)*(self.grid[1]+1)*(self.grid[2]+1)
self.N_elements = self.grid[0] * self.grid[1] * self.grid[2]
@ -139,7 +139,7 @@ class MPIEspectral_result: # mimic py_post result object
self.N_increments = 1 # add zero'th entry
for i in range(self.N_loadcases):
self.N_increments += self._increments[i]//self._frequencies[i]
# parameters for file handling depending on output format
if options.legacy:
@ -176,17 +176,17 @@ class MPIEspectral_result: # mimic py_post result object
name = ''
filepos=0 # start at the beginning
while name != identifier and filepos < self.dataOffset: # stop searching when found or when reached end of header
self.file.seek(filepos)
self.file.seek(filepos)
# read the starting tag in front of the keyword (Fortran indicates start and end of writing by a 4 byte tag indicating the length of the following data)
dataLen=struct.unpack('i',self.file.read(4))[0]
name = self.file.read(len(identifier)) # anticipate identifier
start=filepos+(4+len(identifier)) # position of the values for the found key
start=filepos+(4+len(identifier)) # position of the values for the found key
filepos=filepos+(4+dataLen+4) # forward to next keyword
if name==identifier: # found the correct name
key['pos'] = start # save position
key['name'] = name
return key
return key
def _keyedPackedArray(self,identifier,count = 3,type = 'd',default = None):
bytecount = {'d': 8,'i': 4}
@ -251,10 +251,10 @@ class MPIEspectral_result: # mimic py_post result object
def element_sequence(self,e):
return e-1
def element_id(self,e):
return e+1
def element(self,e):
a = self.grid[0]+1
b = self.grid[1]+1
@ -291,7 +291,7 @@ class MPIEspectral_result: # mimic py_post result object
print 'seeking',incStart+where
print 'e',e,'idx',idx
sys.exit(1)
else:
self.fourByteLimit = 2**31 -1 -8
# header & footer + extra header and footer for 4 byte int range (Fortran)
@ -309,7 +309,7 @@ class MPIEspectral_result: # mimic py_post result object
data += self.file.read(1)
where += 1
value = struct.unpack('d',data)[0]
else:
else:
self.file.seek(incStart+where+(where//self.fourByteLimit)*8+4)
value = struct.unpack('d',self.file.read(8))[0]
except:
@ -328,39 +328,39 @@ class MPIEspectral_result: # mimic py_post result object
# -----------------------------
def ipCoords(elemType, nodalCoordinates):
"""returns IP coordinates for a given element"""
nodeWeightsPerNode = {
7: [ [27.0, 9.0, 3.0, 9.0, 9.0, 3.0, 1.0, 3.0],
[ 9.0, 27.0, 9.0, 3.0, 3.0, 9.0, 3.0, 1.0],
[ 3.0, 9.0, 27.0, 9.0, 1.0, 3.0, 9.0, 3.0],
[ 9.0, 3.0, 9.0, 27.0, 3.0, 1.0, 3.0, 9.0],
[ 9.0, 3.0, 1.0, 3.0, 27.0, 9.0, 3.0, 9.0],
[ 3.0, 9.0, 3.0, 1.0, 9.0, 27.0, 9.0, 3.0],
[ 1.0, 3.0, 9.0, 3.0, 3.0, 9.0, 27.0, 9.0],
[ 3.0, 1.0, 3.0, 9.0, 9.0, 3.0, 9.0, 27.0] ],
57: [ [27.0, 9.0, 3.0, 9.0, 9.0, 3.0, 1.0, 3.0],
[ 9.0, 27.0, 9.0, 3.0, 3.0, 9.0, 3.0, 1.0],
[ 3.0, 9.0, 27.0, 9.0, 1.0, 3.0, 9.0, 3.0],
[ 9.0, 3.0, 9.0, 27.0, 3.0, 1.0, 3.0, 9.0],
[ 9.0, 3.0, 1.0, 3.0, 27.0, 9.0, 3.0, 9.0],
[ 3.0, 9.0, 3.0, 1.0, 9.0, 27.0, 9.0, 3.0],
[ 1.0, 3.0, 9.0, 3.0, 3.0, 9.0, 27.0, 9.0],
[ 3.0, 1.0, 3.0, 9.0, 9.0, 3.0, 9.0, 27.0] ],
117: [ [ 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0] ],
nodeWeightsPerNode = {
7: [ [27.0, 9.0, 3.0, 9.0, 9.0, 3.0, 1.0, 3.0],
[ 9.0, 27.0, 9.0, 3.0, 3.0, 9.0, 3.0, 1.0],
[ 3.0, 9.0, 27.0, 9.0, 1.0, 3.0, 9.0, 3.0],
[ 9.0, 3.0, 9.0, 27.0, 3.0, 1.0, 3.0, 9.0],
[ 9.0, 3.0, 1.0, 3.0, 27.0, 9.0, 3.0, 9.0],
[ 3.0, 9.0, 3.0, 1.0, 9.0, 27.0, 9.0, 3.0],
[ 1.0, 3.0, 9.0, 3.0, 3.0, 9.0, 27.0, 9.0],
[ 3.0, 1.0, 3.0, 9.0, 9.0, 3.0, 9.0, 27.0] ],
57: [ [27.0, 9.0, 3.0, 9.0, 9.0, 3.0, 1.0, 3.0],
[ 9.0, 27.0, 9.0, 3.0, 3.0, 9.0, 3.0, 1.0],
[ 3.0, 9.0, 27.0, 9.0, 1.0, 3.0, 9.0, 3.0],
[ 9.0, 3.0, 9.0, 27.0, 3.0, 1.0, 3.0, 9.0],
[ 9.0, 3.0, 1.0, 3.0, 27.0, 9.0, 3.0, 9.0],
[ 3.0, 9.0, 3.0, 1.0, 9.0, 27.0, 9.0, 3.0],
[ 1.0, 3.0, 9.0, 3.0, 3.0, 9.0, 27.0, 9.0],
[ 3.0, 1.0, 3.0, 9.0, 9.0, 3.0, 9.0, 27.0] ],
117: [ [ 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0] ],
125: [ [ 3.0, 0.0, 0.0, 4.0, 1.0, 4.0],
[ 0.0, 3.0, 0.0, 4.0, 4.0, 1.0],
[ 0.0, 0.0, 3.0, 1.0, 4.0, 4.0],],
[ 0.0, 0.0, 3.0, 1.0, 4.0, 4.0],],
127: [ [ 45.0, 17.0, 17.0, 17.0],
[ 17.0, 45.0, 17.0, 17.0],
[ 17.0, 17.0, 45.0, 17.0],
[ 17.0, 17.0, 17.0, 45.0],],
136: [ [42.0, 15.0, 15.0, 14.0, 5.0, 5.0],
[15.0, 42.0, 15.0, 5.0, 14.0, 5.0],
[15.0, 15.0, 42.0, 5.0, 5.0, 14.0],
[14.0, 5.0, 5.0, 42.0, 15.0, 15.0],
[ 5.0, 14.0, 5.0, 15.0, 42.0, 15.0],
[ 5.0, 5.0, 14.0, 15.0, 15.0, 42.0] ],
[ 17.0, 17.0, 17.0, 45.0],],
136: [ [42.0, 15.0, 15.0, 14.0, 5.0, 5.0],
[15.0, 42.0, 15.0, 5.0, 14.0, 5.0],
[15.0, 15.0, 42.0, 5.0, 5.0, 14.0],
[14.0, 5.0, 5.0, 42.0, 15.0, 15.0],
[ 5.0, 14.0, 5.0, 15.0, 42.0, 15.0],
[ 5.0, 5.0, 14.0, 15.0, 15.0, 42.0] ],
}
Nips = len(nodeWeightsPerNode[elemType])
ipCoordinates = [[0.0,0.0,0.0] for i in range(Nips)]
for ip in range(Nips):
@ -369,7 +369,7 @@ def ipCoords(elemType, nodalCoordinates):
ipCoordinates[ip][i] += nodeWeightsPerNode[elemType][ip][node] * nodalCoordinates[node][i]
for i in range(3):
ipCoordinates[ip][i] /= sum(nodeWeightsPerNode[elemType][ip])
return ipCoordinates
@ -377,15 +377,15 @@ def ipCoords(elemType, nodalCoordinates):
# -----------------------------
def ipIDs(elemType):
"""returns IP numbers for given element type"""
ipPerNode = {
7: [ 1, 2, 4, 3, 5, 6, 8, 7 ],
57: [ 1, 2, 4, 3, 5, 6, 8, 7 ],
ipPerNode = {
7: [ 1, 2, 4, 3, 5, 6, 8, 7 ],
57: [ 1, 2, 4, 3, 5, 6, 8, 7 ],
117: [ 1 ],
125: [ 1, 2, 3 ],
127: [ 1, 2, 3, 4 ],
136: [ 1, 2, 3, 4, 5, 6 ],
125: [ 1, 2, 3 ],
127: [ 1, 2, 3, 4 ],
136: [ 1, 2, 3, 4, 5, 6 ],
}
return ipPerNode[elemType]
@ -457,7 +457,7 @@ def OpenPostfile(name,type,nodal = False):
}[type](name)
p.extrapolation({True:'linear',False:'translate'}[nodal])
p.moveto(1)
return p
@ -475,9 +475,9 @@ def ParseOutputFormat(filename,what,me):
break
except:
pass
if content == []: return format # nothing found...
tag = ''
tagID = 0
for line in content:
@ -527,7 +527,7 @@ def ParsePostfile(p,filename, outputFormat):
'LabelOfElementalTensor': [None]*p.element_tensors(), \
}
# --- find labels
# --- find labels
for labelIndex in range(stat['NumberOfNodalScalars']):
label = p.node_scalar_label(labelIndex)
@ -543,17 +543,17 @@ def ParsePostfile(p,filename, outputFormat):
label = p.element_tensor_label(labelIndex)
stat['IndexOfLabel'][label] = labelIndex
stat['LabelOfElementalTensor'][labelIndex] = label
if 'User Defined Variable 1' in stat['IndexOfLabel']: # output format without dedicated names?
stat['IndexOfLabel']['HomogenizationCount'] = stat['IndexOfLabel']['User Defined Variable 1'] # adjust first named entry
if 'HomogenizationCount' in stat['IndexOfLabel']: # does the result file contain relevant user defined output at all?
startIndex = stat['IndexOfLabel']['HomogenizationCount']
stat['LabelOfElementalScalar'][startIndex] = 'HomogenizationCount'
# We now have to find a mapping for each output label as defined in the .output* files to the output position in the post file
# Since we know where the user defined outputs start ("startIndex"), we can simply assign increasing indices to the labels
# given in the .output* file
# given in the .output* file
offset = 1
for (name,N) in outputFormat['Homogenization']['outputs']:
@ -595,7 +595,7 @@ def ParsePostfile(p,filename, outputFormat):
print 'trying to assign %s at position %i+%i'%(label,startIndex,offset)
sys.exit(1)
offset += 1
return stat
@ -614,7 +614,7 @@ def SummarizePostfile(stat,where=sys.stdout,format='marc'):
+ '\n '.join(stat['LabelOfElementalScalar']) + '\n\n')
where.write('elemental tensors:\t%i'%stat['NumberOfElementalTensors'] + '\n\n '\
+ '\n '.join(stat['LabelOfElementalTensor']) + '\n\n')
return True
@ -625,9 +625,9 @@ def SummarizePostfile(stat,where=sys.stdout,format='marc'):
# --- input parsing
parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
Extract data from a .t16 (MSC.Marc) or .spectralOut results file.
Extract data from a .t16 (MSC.Marc) or .spectralOut results file.
List of output variables is given by options '--ns','--es','--et','--ho','--cr','--co'.
List of output variables is given by options '--ns','--es','--et','--ho','--cr','--co'.
Filters and separations use 'elem','node','ip','grain', and 'x','y','z' as key words.
Example:
@ -751,12 +751,12 @@ if options.filetype is None:
if ext in fileExtensions[theType]:
options.filetype = theType
break
if options.filetype is not None: options.filetype = options.filetype.lower()
if options.filetype == 'marc': offset_pos = 1
else: offset_pos = 0
# --- more sanity checks
@ -766,7 +766,7 @@ if options.filetype not in ['marc','spectral']:
if options.filetype == 'marc':
sys.path.append(damask.solver.Marc().libraryPath())
try:
from py_post import post_open
except:
@ -810,7 +810,7 @@ else:
extension = os.path.splitext(files[0])[1]
outputFormat = {}
me = {
me = {
'Homogenization': options.homog,
'Crystallite': options.cryst,
'Constitutive': options.phase,
@ -823,7 +823,7 @@ for what in me:
if '_id' not in outputFormat[what]['specials']:
print "\nsection '%s' not found in <%s>"%(me[what], what)
print '\n'.join(map(lambda x:' [%s]'%x, outputFormat[what]['specials']['brothers']))
bg.set_message('opening result file...')
p = OpenPostfile(filename+extension,options.filetype,options.nodal)
bg.set_message('parsing result file...')
@ -834,7 +834,7 @@ if options.filetype == 'marc':
# --- sanity check for output variables
# for mentat variables (nodalScalar,elemScalar,elemTensor) we simply have to check whether the label
# is found in the stat[indexOfLabel] dictionary for user defined variables (homogenizationResult,
# crystalliteResult,constitutiveResult) we have to check the corresponding outputFormat, since the
# crystalliteResult,constitutiveResult) we have to check the corresponding outputFormat, since the
# namescheme in stat['IndexOfLabel'] is different
for opt in ['nodalScalar','elemScalar','elemTensor','homogenizationResult','crystalliteResult','constitutiveResult']:
@ -856,13 +856,13 @@ if options.info:
print '\n\n',p
SummarizePostfile(stat)
print '\nUser Defined Outputs'
for what in me:
print '\n ',what,':'
for output in outputFormat[what]['outputs']:
print ' ',output
sys.exit(0)
@ -900,12 +900,12 @@ if options.nodalScalar:
myElemID = 0
myIpID = 0
myGrainID = 0
# generate an expression that is only true for the locations specified by options.filter
filter = substituteLocation(options.filter, [myElemID,myNodeID,myIpID,myGrainID], myNodeCoordinates)
if filter != '' and not eval(filter): # for all filter expressions that are not true:...
continue # ... ignore this data point and continue with next
# --- group data locations
# generate a unique key for a group of separated data based on the separation criterium for the location
grp = substituteLocation('#'.join(options.sep), [myElemID,myNodeID,myIpID,myGrainID], myNodeCoordinates)
@ -925,7 +925,7 @@ if options.nodalScalar:
myNodeCoordinates) # incrementally update average location
groups[index[grp]].append([myElemID,myNodeID,myIpID,myGrainID,0]) # append a new list defining each group member
memberCount += 1
else:
for e in xrange(stat['NumberOfElements']):
if e%1000 == 0:
@ -943,22 +943,22 @@ else:
and int(p.element_scalar(e, stat['IndexOfLabel']['GrainCount'])[0].value))\
or 1):
myGrainID = g + 1
# --- filter valid locations
# generates an expression that is only true for the locations specified by options.filter
filter = substituteLocation(options.filter, [myElemID,myNodeID,myIpID,myGrainID], myIpCoordinates[n])
filter = substituteLocation(options.filter, [myElemID,myNodeID,myIpID,myGrainID], myIpCoordinates[n])
if filter != '' and not eval(filter): # for all filter expressions that are not true:...
continue # ... ignore this data point and continue with next
# --- group data locations
# generates a unique key for a group of separated data based on the separation criterium for the location
grp = substituteLocation('#'.join(options.sep), [myElemID,myNodeID,myIpID,myGrainID], myIpCoordinates[n])
grp = substituteLocation('#'.join(options.sep), [myElemID,myNodeID,myIpID,myGrainID], myIpCoordinates[n])
if grp not in index: # create a new group if not yet present
index[grp] = groupCount
groups.append([[0,0,0,0,0.0,0.0,0.0]]) # initialize with avg location
groupCount += 1
groups[index[grp]][0][:4] = mapIncremental('','unique',
len(groups[index[grp]])-1,
groups[index[grp]][0][:4],
@ -1055,12 +1055,12 @@ for incCount,position in enumerate(locations): # walk through locations
+'"%(dirname + os.sep + options.prefix + os.path.split(filename)[1],increments[incCount],options.suffix)')
else:
outFilename = '%s.txt'%(dirname + os.sep + options.prefix + os.path.split(filename)[1] + options.suffix)
if not fileOpen:
file = open(outFilename,'w')
fileOpen = True
file.write('2\theader\n')
file.write(scriptID + '\t' + ' '.join(sys.argv[1:]))
file.write(scriptID + '\t' + ' '.join(sys.argv[1:]) + '\n')
headerWritten = False
file.flush()
@ -1097,7 +1097,7 @@ for incCount,position in enumerate(locations): # walk through locations
if options.elemScalar:
for label in options.elemScalar:
if assembleHeader:
if assembleHeader:
header += [''.join( label.split() )]
newby.append({'label':label,
'len':1,
@ -1105,17 +1105,17 @@ for incCount,position in enumerate(locations): # walk through locations
if options.elemTensor:
for label in options.elemTensor:
if assembleHeader:
if assembleHeader:
header += heading('.',[[''.join( label.split() ),component]
for component in ['intensity','t11','t22','t33','t12','t23','t13']])
myTensor = p.element_tensor(p.element_sequence(e),stat['IndexOfLabel'][label])[n_local]
newby.append({'label':label,
'len':7,
'content':[ myTensor.intensity,
'content':[ myTensor.intensity,
myTensor.t11, myTensor.t22, myTensor.t33,
myTensor.t12, myTensor.t23, myTensor.t13,
]})
if options.homogenizationResult or \
options.crystalliteResult or \
options.constitutiveResult:
@ -1135,7 +1135,7 @@ for incCount,position in enumerate(locations): # walk through locations
try:
newby.append({'label':label,
'len':length,
'content':[ p.element_scalar(p.element_sequence(e),stat['IndexOfLabel'][head])[n_local].value
'content':[ p.element_scalar(p.element_sequence(e),stat['IndexOfLabel'][head])[n_local].value
for head in thisHead ]})
except KeyError:
print '\nDAMASK outputs seem missing from "post" section of the *.dat file!'
@ -1165,7 +1165,7 @@ for incCount,position in enumerate(locations): # walk through locations
group[0] + \
mappedResult)
) + '\n')
if fileOpen:
file.close()

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,re

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,string,math,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,vtk

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,vtk

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,vtk

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,vtk

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import sys,os,re

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math,types,time

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,re

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
from optparse import OptionParser

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
"""

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import sys,os

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import sys,os,math,re

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import threading,time,os,sys,random

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,math,sys

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@ -1,4 +1,4 @@
#!/usr/bin/env python2
#!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*-
import os,sys,math,random