Merged branch development into development

This commit is contained in:
Philip Eisenlohr 2016-07-24 19:19:03 -04:00
commit 99963ca1dd
86 changed files with 175 additions and 175 deletions

View File

@ -1 +1 @@
v2.0.0-350-g7d84b99 v2.0.0-396-g03bb0b8

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys
@ -40,7 +40,7 @@ for version in MarcReleases:
os.remove(sym_link) os.remove(sym_link)
sys.stdout.write(sym_link) sys.stdout.write(sym_link)
else: else:
sys.stdout.write(damask.util.bcolors.BOLD + sym_link + damask.util.bcolors.ENDC) sys.stdout.write(damask.util.emph(sym_link))
os.symlink(src,sym_link) os.symlink(src,sym_link)
sys.stdout.write(' -> '+src+'\n') sys.stdout.write(' -> '+src+'\n')

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
# Makes postprocessing routines acessible from everywhere. # Makes postprocessing routines acessible from everywhere.
@ -29,7 +29,7 @@ for subDir in processing_subDirs:
os.remove(sym_link) os.remove(sym_link)
sys.stdout.write(sym_link) sys.stdout.write(sym_link)
else: else:
sys.stdout.write(damask.util.bcolors.BOLD + sym_link + damask.util.bcolors.ENDC) sys.stdout.write(damask.util.emph(sym_link))
os.symlink(src,sym_link) os.symlink(src,sym_link)
sys.stdout.write(' -> '+src+'\n') sys.stdout.write(' -> '+src+'\n')

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os import os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,string,scipy import os,string,scipy

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,string,vtk import os,string,vtk

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import threading,time,os import threading,time,os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,re,sys import os,re,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os import os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,itertools import os,sys,itertools

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,time,copy import os,sys,time,copy

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os import os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,re,sys,fnmatch import os,re,sys,fnmatch

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import sys,os import sys,os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math,re,time,struct import os,sys,math,re,time,struct
@ -1060,7 +1060,7 @@ for incCount,position in enumerate(locations): # walk through locations
file = open(outFilename,'w') file = open(outFilename,'w')
fileOpen = True fileOpen = True
file.write('2\theader\n') file.write('2\theader\n')
file.write(scriptID + '\t' + ' '.join(sys.argv[1:])) file.write(scriptID + '\t' + ' '.join(sys.argv[1:]) + '\n')
headerWritten = False headerWritten = False
file.flush() file.flush()

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,re import os,sys,re

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os import os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,string,math,sys import os,string,math,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,vtk import os,vtk

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,vtk import os,vtk

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,vtk import os,sys,vtk

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,vtk import os,sys,vtk

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import sys,os,re import sys,os,re

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math,types,time import os,sys,math,types,time

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math import os,sys,math

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,re import os,re

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
from optparse import OptionParser from optparse import OptionParser

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
""" """

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import sys,os import sys,os

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import sys,os,math,re import sys,os,math,re

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import threading,time,os,sys,random import threading,time,os,sys,random

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,math,sys import os,math,sys

View File

@ -1,4 +1,4 @@
#!/usr/bin/env python2 #!/usr/bin/env python2.7
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys,math,random import os,sys,math,random