Merge branch 'development' into using-submodules
This commit is contained in:
Sharan Roongta
commit
98d0da8e31
|
|
@ -9,8 +9,8 @@ source $ENV_ROOT/CONFIG
|
|||
|
||||
set path = ($DAMASK_ROOT/bin $path)
|
||||
|
||||
set SOLVER=`which DAMASK_spectral`
|
||||
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
|
||||
set SOLVER=`which DAMASK_grid`
|
||||
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
|
||||
set DAMASK_NUM_THREADS=1
|
||||
endif
|
||||
|
||||
|
|
@ -30,7 +30,7 @@ if ( $?prompt ) then
|
|||
echo
|
||||
echo Using environment with ...
|
||||
echo "DAMASK $DAMASK_ROOT"
|
||||
echo "Grid Solver $SOLVER"
|
||||
echo "Grid Solver $SOLVER"
|
||||
if ( $?PETSC_DIR) then
|
||||
echo "PETSc location $PETSC_DIR"
|
||||
endif
|
||||
|
|
|
|||
|
|
@ -35,7 +35,7 @@ cd $DAMASK_ROOT >/dev/null; BRANCH=$(git branch 2>/dev/null| grep -E '^\* '); cd
|
|||
|
||||
PATH=${DAMASK_ROOT}/bin:$PATH
|
||||
|
||||
SOLVER=$(type -p DAMASK_spectral || true 2>/dev/null)
|
||||
SOLVER=$(type -p DAMASK_grid || true 2>/dev/null)
|
||||
[ "x$SOLVER" == "x" ] && SOLVER=$(blink 'Not found!')
|
||||
|
||||
[ "x$DAMASK_NUM_THREADS" == "x" ] && DAMASK_NUM_THREADS=1
|
||||
|
|
@ -56,7 +56,7 @@ if [ ! -z "$PS1" ]; then
|
|||
echo
|
||||
echo Using environment with ...
|
||||
echo "DAMASK $DAMASK_ROOT $BRANCH"
|
||||
echo "Grid Solver $SOLVER"
|
||||
echo "Grid Solver $SOLVER"
|
||||
if [ "x$PETSC_DIR" != "x" ]; then
|
||||
echo -n "PETSc location "
|
||||
[ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR
|
||||
|
|
|
|||
|
|
@ -27,7 +27,7 @@ cd $DAMASK_ROOT >/dev/null; BRANCH=$(git branch 2>/dev/null| grep -E '^\* '); cd
|
|||
|
||||
PATH=${DAMASK_ROOT}/bin:$PATH
|
||||
|
||||
SOLVER=$(which DAMASK_spectral || true 2>/dev/null)
|
||||
SOLVER=$(which DAMASK_grid || true 2>/dev/null)
|
||||
[[ "x$SOLVER" == "x" ]] && SOLVER=$(blink 'Not found!')
|
||||
|
||||
[[ "x$DAMASK_NUM_THREADS" == "x" ]] && DAMASK_NUM_THREADS=1
|
||||
|
|
@ -48,7 +48,7 @@ if [ ! -z "$PS1" ]; then
|
|||
echo
|
||||
echo "Using environment with ..."
|
||||
echo "DAMASK $DAMASK_ROOT $BRANCH"
|
||||
echo "Grid Solver $SOLVER"
|
||||
echo "Grid Solver $SOLVER"
|
||||
if [ "x$PETSC_DIR" != "x" ]; then
|
||||
echo -n "PETSc location "
|
||||
[ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR
|
||||
|
|
|
|||
|
|
@ -1,2 +0,0 @@
|
|||
itmin 4
|
||||
itmax 40
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
grid:
|
||||
itmin: 4
|
||||
itmax: 40
|
||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -63,7 +63,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -177,16 +177,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -203,7 +203,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -613,7 +613,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -624,7 +624,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -635,7 +635,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -651,7 +651,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -665,7 +665,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -676,7 +676,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -847,7 +847,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -898,7 +898,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -934,7 +934,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1030,7 +1030,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1108,7 +1108,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $nauto -gt 2
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for auto restart "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2039,42 +2039,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2327,7 +2327,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2360,7 +2360,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2474,9 +2474,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2560,7 +2560,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2569,7 +2569,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2729,7 +2729,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2859,7 +2859,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2870,7 +2870,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3267,6 +3267,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3309,7 +3310,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3318,10 +3319,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3389,15 +3390,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3579,7 +3580,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3647,7 +3649,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3696,7 +3698,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3913,7 +3915,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4055,7 +4058,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
|||
exit 1
|
||||
}
|
||||
/bin/rm $userobj
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.mod
|
||||
/bin/rm $DIRJOB/*.smod
|
||||
|
|
|
|||
|
|
@ -62,7 +62,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -176,16 +176,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -202,7 +202,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -612,7 +612,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -623,7 +623,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -634,7 +634,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -650,7 +650,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -664,7 +664,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -675,7 +675,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -777,7 +777,7 @@ do
|
|||
;;
|
||||
-au* | -AU*)
|
||||
nauto=$value
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -au is no longer supported and will be ignored
|
||||
echo
|
||||
;;
|
||||
|
|
@ -849,7 +849,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -900,7 +900,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -936,7 +936,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1032,7 +1032,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1110,7 +1110,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2017,42 +2017,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2305,7 +2305,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2338,7 +2338,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2452,9 +2452,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2538,7 +2538,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2547,7 +2547,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2707,7 +2707,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2837,7 +2837,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2848,7 +2848,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3241,6 +3241,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3283,7 +3284,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3292,10 +3293,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3363,15 +3364,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3553,7 +3554,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3621,7 +3623,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3670,7 +3672,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3887,7 +3889,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4029,7 +4032,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -62,7 +62,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -176,16 +176,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -202,7 +202,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -612,7 +612,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -623,7 +623,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -634,7 +634,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -650,7 +650,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -664,7 +664,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -675,7 +675,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -777,7 +777,7 @@ do
|
|||
;;
|
||||
-au* | -AU*)
|
||||
nauto=$value
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -au is no longer supported and will be ignored
|
||||
echo
|
||||
;;
|
||||
|
|
@ -849,7 +849,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -900,7 +900,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -936,7 +936,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1032,7 +1032,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1110,7 +1110,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2017,42 +2017,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2305,7 +2305,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2338,7 +2338,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2452,9 +2452,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2538,7 +2538,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2547,7 +2547,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2707,7 +2707,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2837,7 +2837,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2848,7 +2848,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3241,6 +3241,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3283,7 +3284,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3292,10 +3293,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3363,15 +3364,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3553,7 +3554,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3621,7 +3623,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3670,7 +3672,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3887,7 +3889,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4029,7 +4032,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -62,7 +62,7 @@
|
|||
# =1, element storage out-of-core #
|
||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||
# =1, used #
|
||||
# =2, do not free streaming input memory #
|
||||
# =2, do not free streaming input memory #
|
||||
# =3, run with marc input deck #
|
||||
# -trk run marc for post-tracking #
|
||||
# -gpuid run marc using GPGPU capability #
|
||||
|
|
@ -176,16 +176,16 @@ fi
|
|||
# MARC_MODE i8
|
||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||
# and by the command line option "-mo"
|
||||
#
|
||||
#
|
||||
mode=
|
||||
modeerror=
|
||||
modeoption=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
echo
|
||||
line=
|
||||
fi
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||
|
|
@ -202,7 +202,7 @@ fi
|
|||
if test -f $HOME/run_marc_defaults; then
|
||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||
if test "$line" = "MARC_MODE"; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
line=
|
||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
|||
mode=i8
|
||||
fi
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||
modeoption=error
|
||||
echo $modeerror
|
||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
|||
if $setmode ; then
|
||||
mode=$arg
|
||||
case $mode in
|
||||
i4)
|
||||
i4)
|
||||
modeerror="bad value for mode option; only i8 is supported."
|
||||
modeoption=error
|
||||
echo
|
||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
|||
setmode=false
|
||||
fi
|
||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||
echo
|
||||
setmode=true
|
||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
|||
;;
|
||||
esac
|
||||
|
||||
#
|
||||
#
|
||||
# Variables for the MARC environment
|
||||
#
|
||||
|
||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
|||
export LD_LIBRARY_PATH
|
||||
export LD_LIBRARY64_PATH
|
||||
export LD_LIBRARYN32_PATH
|
||||
|
||||
|
||||
atexit() {
|
||||
kill -15 $$
|
||||
#
|
||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
|||
# or in the user's home directory
|
||||
# format:
|
||||
# MARC_MPI <mpiversion>
|
||||
#
|
||||
#
|
||||
value=
|
||||
file=
|
||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
|||
fi
|
||||
fi
|
||||
fi
|
||||
#
|
||||
#
|
||||
#
|
||||
# allow scratch directory to be specified with environmental variable
|
||||
# MARCSCRATCH
|
||||
|
|
@ -612,7 +612,7 @@ do
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-r* | -R*)
|
||||
rid=`$BASENAME $value .t08`
|
||||
|
|
@ -623,7 +623,7 @@ do
|
|||
*)
|
||||
DIRRID=`pwd`/$DIRRID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-si* | -SI*)
|
||||
sid=$value
|
||||
|
|
@ -634,7 +634,7 @@ do
|
|||
*)
|
||||
DIRSID=`pwd`/$DIRSID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-pi* | -PI*)
|
||||
if test -f $value.t19
|
||||
|
|
@ -650,7 +650,7 @@ do
|
|||
*)
|
||||
DIRPID=`pwd`/$DIRPID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-bdf | -BDF)
|
||||
makebdf=1
|
||||
|
|
@ -664,7 +664,7 @@ do
|
|||
*)
|
||||
DIRDID=`pwd`/$DIRDID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-vf | -VF)
|
||||
vid=`$BASENAME $value .vfs`
|
||||
|
|
@ -675,7 +675,7 @@ do
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-u* | -U*)
|
||||
user=$value
|
||||
|
|
@ -777,7 +777,7 @@ do
|
|||
;;
|
||||
-au* | -AU*)
|
||||
nauto=$value
|
||||
echo
|
||||
echo
|
||||
echo warning: the option -au is no longer supported and will be ignored
|
||||
echo
|
||||
;;
|
||||
|
|
@ -849,7 +849,7 @@ do
|
|||
*)
|
||||
DIRSCR=`pwd`/$DIRSCR
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
-ho* | -HO*)
|
||||
host=$value
|
||||
|
|
@ -900,7 +900,7 @@ fi
|
|||
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -936,7 +936,7 @@ fi
|
|||
ntprint=$nt
|
||||
nteprint=$nte
|
||||
# copy from -nprocd[s]
|
||||
if test $nprocdddm -gt 1
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
nteprint=$nprocdddm
|
||||
fi
|
||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
|||
then
|
||||
nteprint=$nte
|
||||
fi
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
# check for minimum 1 threads per processes for DDM
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
if test $nteprint -lt $nprocdddm
|
||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
|||
# deprecate -nthread option at arugment of marc
|
||||
nt=0
|
||||
# Reset nprocdddmm, nsolver and threads if not given.
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdarg=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddmprint=
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nprocdddm -eq 0
|
||||
then
|
||||
nprocdddm=
|
||||
fi
|
||||
fi
|
||||
|
||||
nsolverprint=$nsolver
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
if test $nsolver -eq 0
|
||||
then
|
||||
nsolverprint=
|
||||
fi
|
||||
fi
|
||||
# end of threads setting.
|
||||
gpuoption=
|
||||
if test "$gpuids" = "" ; then
|
||||
|
|
@ -1032,7 +1032,7 @@ else
|
|||
MARCCUDALIBS=$MARCCUDALIBS2
|
||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||
fi
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||
then
|
||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
|||
fi
|
||||
|
||||
if test "$progdll"; then
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||
rmdll=yes
|
||||
pathdll=yes
|
||||
progdll=${progdll}_$marcdll
|
||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
|||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/1$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
else
|
||||
if test ! -f $DIRJID/$jid$dotdat; then
|
||||
if test "$jid" != "" ; then
|
||||
error="$error
|
||||
error="$error
|
||||
input file $DIRJID/$jid$dotdat not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1110,7 +1110,7 @@ fi
|
|||
if test $nprocd -gt 1; then
|
||||
if test "$host" ; then
|
||||
if test ! -f $host; then
|
||||
error="$error
|
||||
error="$error
|
||||
host name file $host not accessible"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
|||
notok=false
|
||||
fi
|
||||
done
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||
notok=false
|
||||
fi
|
||||
if $notok; then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
|||
then
|
||||
if test $ndcoup -gt 3
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for contact decoupling "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
|||
then
|
||||
if test $ndytran -gt 1
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for Marc-Dytran Switch "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
|||
then
|
||||
if test ! -x $MARC_BIN/$exefile
|
||||
then
|
||||
error="$error
|
||||
error="$error
|
||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||
fi
|
||||
fi
|
||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRJID=`pwd`/$DIRJID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
fi
|
||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
user=`pwd`/$user
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
usernoext=$user
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
*)
|
||||
DIRVID=`pwd`/$DIRVID
|
||||
;;
|
||||
esac
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
fi
|
||||
if test $nsolver -gt 0
|
||||
then
|
||||
if test $nsolver -gt $nprocd
|
||||
if test $nsolver -gt $nprocd
|
||||
then
|
||||
nprocd=$nsolver
|
||||
fi
|
||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
|||
then
|
||||
qid=$value
|
||||
fi
|
||||
case $qid in
|
||||
case $qid in
|
||||
s* | S* | l* | L* | v* | V* )
|
||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||
read value
|
||||
|
|
@ -2017,42 +2017,42 @@ esac
|
|||
|
||||
done
|
||||
#
|
||||
if test $nt -eq 0
|
||||
then
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntarg=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
ntprint=
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nt -eq 0
|
||||
then
|
||||
nt=
|
||||
fi
|
||||
|
||||
if test $nte -eq 0
|
||||
then
|
||||
if test $nte -eq 0
|
||||
then
|
||||
ntearg=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nteprint=
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nte -eq 0
|
||||
then
|
||||
nte=
|
||||
fi
|
||||
|
||||
if test $nts -eq 0
|
||||
then
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsarg=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
ntsprint=
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
fi
|
||||
if test $nts -eq 0
|
||||
then
|
||||
nts=
|
||||
fi
|
||||
#
|
||||
|
|
@ -2305,7 +2305,7 @@ fi
|
|||
execpath=$usernoext.marc
|
||||
usersub=1
|
||||
fi
|
||||
export execpath
|
||||
export execpath
|
||||
execname=`$BASENAME $execpath`
|
||||
|
||||
if test "$host"
|
||||
|
|
@ -2338,7 +2338,7 @@ fi
|
|||
exit 1
|
||||
fi
|
||||
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# check for Myrinet that the number of processes per host is
|
||||
# less than number of available user ports, 5
|
||||
# .gmpi directory must exist in user's home directory
|
||||
# and must have write permission from remote hosts
|
||||
|
|
@ -2452,9 +2452,9 @@ fi
|
|||
then
|
||||
# Intel MPI
|
||||
if test -f $jid.mfile
|
||||
then
|
||||
then
|
||||
/bin/rm $jid.mfile 2> /dev/null
|
||||
fi
|
||||
fi
|
||||
/bin/cp $host $jid.host
|
||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||
# end Intel MPI for DMP
|
||||
|
|
@ -2538,7 +2538,7 @@ fi
|
|||
else
|
||||
host=$jid.host
|
||||
host_filt=$host
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||
then
|
||||
host_filt=$jid.mfile
|
||||
fi
|
||||
|
|
@ -2547,7 +2547,7 @@ fi
|
|||
# or distributed and set the variable "dirstatus" accordingly.
|
||||
# only perform the check if user subroutine is used
|
||||
# or a user subroutine executable is used
|
||||
|
||||
|
||||
numfield=1
|
||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||
then
|
||||
|
|
@ -2707,7 +2707,7 @@ fi
|
|||
fi
|
||||
# modify new host file if NFS mounted heterogeneous machine
|
||||
doit=
|
||||
if test $program = $prog.marc
|
||||
if test $program = $prog.marc
|
||||
then
|
||||
doit=yes
|
||||
fi
|
||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
|||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||
/bin/mv $jid.host{$$} $jid.host
|
||||
host=$jid.host
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
done
|
||||
done
|
||||
fi
|
||||
fi # if test $program = $prog.marc -o $user -o $obj
|
||||
|
||||
|
||||
else # if test $host
|
||||
# assume shared memory machine if no hostfile given and
|
||||
# MPITYPE is set to mpich or Myrinet
|
||||
# check for Myrinet that the total number of processes is
|
||||
# check for Myrinet that the total number of processes is
|
||||
# less than number of available user ports, 5
|
||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||
then
|
||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||
echo `hostname` $numproc $execpath > $jid.host
|
||||
host=$jid.host
|
||||
elif test $MPITYPE = "myrinet"
|
||||
elif test $MPITYPE = "myrinet"
|
||||
then
|
||||
if test $nprocd -gt 5
|
||||
then
|
||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
|||
fi # if test $host
|
||||
|
||||
fi # if test $nprocd -gt 1
|
||||
|
||||
|
||||
fi # if test $program = $exefile -o $program = $prog.marc
|
||||
|
||||
##############################################################################
|
||||
|
|
@ -2837,7 +2837,7 @@ else
|
|||
nsolverarg="$nsolverarg $nsolver"
|
||||
fi
|
||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||
then
|
||||
then
|
||||
nprocd=0
|
||||
fi
|
||||
if test $nprocd -gt 0
|
||||
|
|
@ -2848,7 +2848,7 @@ then
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
|||
then
|
||||
echo " "
|
||||
echo "error: parallel job attempted on non-parallel version,"
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " or, if parallel version is installed, the include "
|
||||
echo " file is probably corrupted"
|
||||
echo " "
|
||||
if test "$deletelog" = no
|
||||
|
|
@ -3241,6 +3241,7 @@ else
|
|||
fi
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3283,7 +3284,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
fi
|
||||
else
|
||||
if test $cpdll = yes; then
|
||||
|
|
@ -3292,10 +3293,10 @@ else
|
|||
fi
|
||||
if test $rmdll = yes
|
||||
then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
||||
if test $nprocdddm -gt 1
|
||||
then
|
||||
numdom=$nprocdddm
|
||||
|
|
@ -3363,15 +3364,15 @@ else
|
|||
#
|
||||
QUENAME=qsub
|
||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||
if test "$priority"
|
||||
if test "$priority"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -p $priority"
|
||||
fi
|
||||
if test "$att"
|
||||
if test "$att"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -a $att"
|
||||
fi
|
||||
if test "$cpu"
|
||||
if test "$cpu"
|
||||
then
|
||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||
fi
|
||||
|
|
@ -3553,7 +3554,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
|
||||
#
|
||||
# run marc
|
||||
|
|
@ -3621,7 +3623,7 @@ fi
|
|||
if test $dllrun -eq 0; then
|
||||
if test $prgsav = no
|
||||
then
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
/bin/rm -f $bd$program 2>/dev/null
|
||||
# for network run, remove executable on remote machines
|
||||
# and executables with modified name
|
||||
if test $nprocd -gt 1
|
||||
|
|
@ -3670,7 +3672,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
if test $nprocdddm -gt 1
|
||||
|
|
@ -3887,7 +3889,7 @@ then
|
|||
then
|
||||
counter=$((counter+1))
|
||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||
then
|
||||
then
|
||||
DIR1=$DIRJOB
|
||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||
workdir=`echo $line | $AWK '{print $3}'`
|
||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
|||
fi # if test $link
|
||||
/bin/rm $userobj 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||
# done if no job id given
|
||||
if test -z "$jid"
|
||||
then
|
||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
|||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||
fi
|
||||
|
||||
$RUN_JOB
|
||||
$RUN_JOB
|
||||
|
||||
if test $nprocd -gt 1
|
||||
then
|
||||
|
|
@ -4029,7 +4032,7 @@ else
|
|||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||
fi
|
||||
if test $rmdll = yes;then
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||
fi
|
||||
fi
|
||||
|
||||
|
|
|
|||
|
|
@ -805,7 +805,7 @@ class Rotation:
|
|||
"""Rotation matrix to Bunge-Euler angles."""
|
||||
with np.errstate(invalid='ignore',divide='ignore'):
|
||||
zeta = 1.0/np.sqrt(1.0-om[...,2,2:3]**2)
|
||||
eu = np.where(np.isclose(np.abs(om[...,2,2:3]),1.0,1e-9),
|
||||
eu = np.where(np.isclose(np.abs(om[...,2,2:3]),1.0,0.0),
|
||||
np.block([np.arctan2(om[...,0,1:2],om[...,0,0:1]),
|
||||
np.pi*0.5*(1-om[...,2,2:3]),
|
||||
np.zeros(om.shape[:-2]+(1,)),
|
||||
|
|
|
|||
|
|
@ -150,7 +150,7 @@ def om2qu(a):
|
|||
|
||||
def om2eu(om):
|
||||
"""Rotation matrix to Bunge-Euler angles."""
|
||||
if not np.isclose(np.abs(om[2,2]),1.0,1.e-9):
|
||||
if not np.isclose(np.abs(om[2,2]),1.0,0.0):
|
||||
zeta = 1.0/np.sqrt(1.0-om[2,2]**2)
|
||||
eu = np.array([np.arctan2(om[2,0]*zeta,-om[2,1]*zeta),
|
||||
np.arccos(om[2,2]),
|
||||
|
|
|
|||
|
|
@ -248,7 +248,7 @@ subroutine CPFEM_general(mode, ffn, ffn1, temperature_inp, dt, elFE, ip, cauchyS
|
|||
endif validCalculation
|
||||
|
||||
if (debugCPFEM%extensive &
|
||||
.and. (debugCPFEM%element == elCP .and. debugCPFEM%ip == ip) .or. .not. debugCPFEM%selective) then
|
||||
.and. ((debugCPFEM%element == elCP .and. debugCPFEM%ip == ip) .or. .not. debugCPFEM%selective)) then
|
||||
write(6,'(a,i8,1x,i2,/,12x,6(f10.3,1x)/)') &
|
||||
'<< CPFEM >> stress/MPa at elFE ip ', elFE, ip, CPFEM_cs(1:6,ip,elCP)*1.0e-6_pReal
|
||||
write(6,'(a,i8,1x,i2,/,6(12x,6(f10.3,1x)/))') &
|
||||
|
|
|
|||
|
|
@ -529,6 +529,8 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
|||
msg = 'unknown material parameter:'
|
||||
case (211)
|
||||
msg = 'material parameter out of bounds:'
|
||||
case (212)
|
||||
msg = 'nonlocal model not supported'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! numerics error messages
|
||||
|
|
|
|||
|
|
@ -15,7 +15,8 @@ module constitutive
|
|||
use results
|
||||
use lattice
|
||||
use discretization
|
||||
use geometry_plastic_nonlocal
|
||||
use geometry_plastic_nonlocal, only: &
|
||||
geometry_plastic_nonlocal_disable
|
||||
|
||||
implicit none
|
||||
private
|
||||
|
|
|
|||
|
|
@ -386,7 +386,11 @@ module subroutine plastic_nonlocal_init
|
|||
|
||||
call material_allocateState(plasticState(p),NipcMyPhase,sizeState,sizeDotState,sizeDeltaState)
|
||||
|
||||
plasticState(p)%nonlocal = config%KeyExists('/nonlocal/')
|
||||
plasticState(p)%nonlocal = config%KeyExists('/nonlocal/')
|
||||
if(plasticState(p)%nonlocal .and. .not. allocated(IPneighborhood)) &
|
||||
call IO_error(212,ext_msg='IPneighborhood does not exist')
|
||||
|
||||
|
||||
plasticState(p)%offsetDeltaState = 0 ! ToDo: state structure does not follow convention
|
||||
|
||||
st0%rho => plasticState(p)%state0 (0*prm%sum_N_sl+1:10*prm%sum_N_sl,:)
|
||||
|
|
|
|||
|
|
@ -118,6 +118,7 @@ subroutine discretization_grid_init(restart)
|
|||
call results_addAttribute('origin',origin, 'geometry')
|
||||
call results_closeJobFile
|
||||
endif
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! geometry information required by the nonlocal CP model
|
||||
call geometry_plastic_nonlocal_setIPvolume(reshape([(product(mySize/real(myGrid,pReal)),j=1,product(myGrid))], &
|
||||
|
|
|
|||
|
|
@ -21,24 +21,24 @@ module discretization_marc
|
|||
|
||||
implicit none
|
||||
private
|
||||
|
||||
|
||||
type tCellNodeDefinition
|
||||
integer, dimension(:,:), allocatable :: parents
|
||||
integer, dimension(:,:), allocatable :: weights
|
||||
end type tCellNodeDefinition
|
||||
|
||||
|
||||
type(tCellNodeDefinition), dimension(:), allocatable :: cellNodeDefinition
|
||||
|
||||
|
||||
real(pReal), public, protected :: &
|
||||
mesh_unitlength !< physical length of one unit in mesh
|
||||
|
||||
|
||||
integer, dimension(:), allocatable, public :: &
|
||||
mesh_FEM2DAMASK_elem, & !< DAMASK element ID for Marc element ID
|
||||
mesh_FEM2DAMASK_node !< DAMASK node ID for Marc node ID
|
||||
|
||||
public :: &
|
||||
discretization_marc_init
|
||||
|
||||
|
||||
contains
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
@ -68,16 +68,16 @@ subroutine discretization_marc_init
|
|||
connectivity_elem
|
||||
real(pReal), dimension(:,:,:,:),allocatable :: &
|
||||
unscaledNormals
|
||||
|
||||
|
||||
class(tNode), pointer :: &
|
||||
num_commercialFEM
|
||||
|
||||
|
||||
write(6,'(/,a)') ' <<<+- discretization_marc init -+>>>'; flush(6)
|
||||
|
||||
!---------------------------------------------------------------------------------
|
||||
! read debug parameters
|
||||
debug_e = debug_root%get_asInt('element',defaultVal=1)
|
||||
debug_i = debug_root%get_asInt('integrationpoint',defaultVal=1)
|
||||
debug_e = debug_root%get_asInt('element',defaultVal=1)
|
||||
debug_i = debug_root%get_asInt('integrationpoint',defaultVal=1)
|
||||
|
||||
!--------------------------------------------------------------------------------
|
||||
! read numerics parameter and do sanity check
|
||||
|
|
@ -90,10 +90,10 @@ subroutine discretization_marc_init
|
|||
|
||||
if (debug_e < 1 .or. debug_e > nElems) call IO_error(602,ext_msg='element')
|
||||
if (debug_i < 1 .or. debug_i > elem%nIPs) call IO_error(602,ext_msg='IP')
|
||||
|
||||
|
||||
FEsolving_execElem = [1,nElems]
|
||||
FEsolving_execIP = [1,elem%nIPs]
|
||||
|
||||
|
||||
allocate(cellNodeDefinition(elem%nNodes-1))
|
||||
allocate(connectivity_cell(elem%NcellNodesPerCell,elem%nIPs,nElems))
|
||||
call buildCells(connectivity_cell,cellNodeDefinition,&
|
||||
|
|
@ -108,7 +108,7 @@ subroutine discretization_marc_init
|
|||
call discretization_init(microstructureAt,homogenizationAt,&
|
||||
IP_reshaped,&
|
||||
node0_cell)
|
||||
|
||||
|
||||
call writeGeometry(elem,connectivity_elem,&
|
||||
reshape(connectivity_cell,[elem%NcellNodesPerCell,elem%nIPs*nElems]),&
|
||||
node0_cell,IP_reshaped)
|
||||
|
|
@ -119,8 +119,9 @@ subroutine discretization_marc_init
|
|||
unscaledNormals = IPareaNormal(elem,nElems,connectivity_cell,node0_cell)
|
||||
call geometry_plastic_nonlocal_setIParea(norm2(unscaledNormals,1))
|
||||
call geometry_plastic_nonlocal_setIPareaNormal(unscaledNormals/spread(norm2(unscaledNormals,1),1,3))
|
||||
!call geometry_plastic_nonlocal_setIPneighborhood ToDo: Support nonlocal
|
||||
call geometry_plastic_nonlocal_results
|
||||
|
||||
|
||||
end subroutine discretization_marc_init
|
||||
|
||||
|
||||
|
|
@ -139,7 +140,7 @@ subroutine writeGeometry(elem, &
|
|||
real(pReal), dimension(:,:), intent(in) :: &
|
||||
coordinates_nodes, &
|
||||
coordinates_points
|
||||
|
||||
|
||||
integer, dimension(:,:), allocatable :: &
|
||||
connectivity_temp
|
||||
real(pReal), dimension(:,:), allocatable :: &
|
||||
|
|
@ -147,24 +148,24 @@ subroutine writeGeometry(elem, &
|
|||
|
||||
call results_openJobFile
|
||||
call results_closeGroup(results_addGroup('geometry'))
|
||||
|
||||
|
||||
connectivity_temp = connectivity_elem
|
||||
call results_writeDataset('geometry',connectivity_temp,'T_e',&
|
||||
'connectivity of the elements','-')
|
||||
|
||||
|
||||
connectivity_temp = connectivity_cell
|
||||
call results_writeDataset('geometry',connectivity_temp,'T_c', &
|
||||
'connectivity of the cells','-')
|
||||
call results_addAttribute('VTK_TYPE',elem%vtkType,'geometry/T_c')
|
||||
|
||||
|
||||
coordinates_temp = coordinates_nodes
|
||||
call results_writeDataset('geometry',coordinates_temp,'x_n', &
|
||||
'initial coordinates of the nodes','m')
|
||||
|
||||
|
||||
coordinates_temp = coordinates_points
|
||||
call results_writeDataset('geometry',coordinates_temp,'x_p', &
|
||||
'initial coordinates of the materialpoints','m')
|
||||
|
||||
|
||||
call results_closeJobFile
|
||||
|
||||
end subroutine writeGeometry
|
||||
|
|
@ -183,7 +184,7 @@ subroutine inputRead(elem,node0_elem,connectivity_elem,microstructureAt,homogeni
|
|||
integer, dimension(:), allocatable, intent(out) :: &
|
||||
microstructureAt, &
|
||||
homogenizationAt
|
||||
|
||||
|
||||
integer :: &
|
||||
fileFormatVersion, &
|
||||
hypoelasticTableStyle, &
|
||||
|
|
@ -193,7 +194,7 @@ subroutine inputRead(elem,node0_elem,connectivity_elem,microstructureAt,homogeni
|
|||
integer, dimension(:), allocatable :: &
|
||||
matNumber !< material numbers for hypoelastic material
|
||||
character(len=pStringLen), dimension(:), allocatable :: inputFile !< file content, separated per lines
|
||||
|
||||
|
||||
character(len=pStringLen), dimension(:), allocatable :: &
|
||||
nameElemSet
|
||||
integer, dimension(:,:), allocatable :: &
|
||||
|
|
@ -209,8 +210,8 @@ subroutine inputRead(elem,node0_elem,connectivity_elem,microstructureAt,homogeni
|
|||
hypoelasticTableStyle,inputFile)
|
||||
call inputRead_NnodesAndElements(nNodes,nElems,&
|
||||
inputFile)
|
||||
|
||||
|
||||
|
||||
|
||||
call inputRead_mapElemSets(nameElemSet,mapElemSet,&
|
||||
inputFile)
|
||||
|
||||
|
|
@ -239,13 +240,13 @@ end subroutine inputRead
|
|||
!> @brief Figures out version of Marc input file format
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_fileFormat(fileFormat,fileContent)
|
||||
|
||||
|
||||
integer, intent(out) :: fileFormat
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
|
||||
integer, allocatable, dimension(:) :: chunkPos
|
||||
integer :: l
|
||||
|
||||
|
||||
do l = 1, size(fileContent)
|
||||
chunkPos = IO_stringPos(fileContent(l))
|
||||
if(chunkPos(1) < 2) cycle
|
||||
|
|
@ -262,13 +263,13 @@ end subroutine inputRead_fileFormat
|
|||
!> @brief Figures out table styles for initial cond and hypoelastic
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_tableStyles(initialcond,hypoelastic,fileContent)
|
||||
|
||||
|
||||
integer, intent(out) :: initialcond, hypoelastic
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
integer, allocatable, dimension(:) :: chunkPos
|
||||
integer :: l
|
||||
|
||||
|
||||
initialcond = 0
|
||||
hypoelastic = 0
|
||||
|
||||
|
|
@ -290,7 +291,7 @@ end subroutine inputRead_tableStyles
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_matNumber(matNumber, &
|
||||
tableStyle,fileContent)
|
||||
|
||||
|
||||
integer, allocatable, dimension(:), intent(out) :: matNumber
|
||||
integer, intent(in) :: tableStyle
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
|
@ -326,7 +327,7 @@ end subroutine inputRead_matNumber
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_NnodesAndElements(nNodes,nElems,&
|
||||
fileContent)
|
||||
|
||||
|
||||
integer, intent(out) :: nNodes, nElems
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
|
|
@ -355,7 +356,7 @@ end subroutine inputRead_NnodesAndElements
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_NelemSets(nElemSets,maxNelemInSet,&
|
||||
fileContent)
|
||||
|
||||
|
||||
integer, intent(out) :: nElemSets, maxNelemInSet
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
|
|
@ -401,7 +402,7 @@ end subroutine inputRead_NelemSets
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_mapElemSets(nameElemSet,mapElemSet,&
|
||||
fileContent)
|
||||
|
||||
|
||||
character(len=pStringLen), dimension(:), allocatable, intent(out) :: nameElemSet
|
||||
integer, dimension(:,:), allocatable, intent(out) :: mapElemSet
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
|
@ -434,7 +435,7 @@ end subroutine inputRead_mapElemSets
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine inputRead_mapElems(FEM2DAMASK, &
|
||||
nElems,nNodesPerElem,fileContent)
|
||||
|
||||
|
||||
integer, allocatable, dimension(:), intent(out) :: FEM2DAMASK
|
||||
|
||||
integer, intent(in) :: nElems, & !< number of elements
|
||||
|
|
@ -492,8 +493,8 @@ subroutine inputRead_mapNodes(FEM2DAMASK, &
|
|||
chunkPos = IO_stringPos(fileContent(l))
|
||||
if(chunkPos(1) < 1) cycle
|
||||
if(IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates') then
|
||||
chunkPos = [1,1,10]
|
||||
do i = 1,nNodes
|
||||
chunkPos = IO_stringPos(fileContent(l+1+i))
|
||||
map_unsorted(:,i) = [IO_intValue(fileContent(l+1+i),chunkPos,1),i]
|
||||
enddo
|
||||
exit
|
||||
|
|
@ -515,10 +516,10 @@ end subroutine inputRead_mapNodes
|
|||
subroutine inputRead_elemNodes(nodes, &
|
||||
nNode,fileContent)
|
||||
|
||||
real(pReal), allocatable, dimension(:,:), intent(out) :: nodes
|
||||
real(pReal), allocatable, dimension(:,:), intent(out) :: nodes
|
||||
integer, intent(in) :: nNode
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
|
||||
integer, allocatable, dimension(:) :: chunkPos
|
||||
integer :: i,j,m,l
|
||||
|
||||
|
|
@ -528,8 +529,8 @@ subroutine inputRead_elemNodes(nodes, &
|
|||
chunkPos = IO_stringPos(fileContent(l))
|
||||
if(chunkPos(1) < 1) cycle
|
||||
if(IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates') then
|
||||
chunkPos = [4,1,10,11,30,31,50,51,70]
|
||||
do i=1,nNode
|
||||
chunkPos = IO_stringPos(fileContent(l+1+i))
|
||||
m = mesh_FEM2DAMASK_node(IO_intValue(fileContent(l+1+i),chunkPos,1))
|
||||
do j = 1,3
|
||||
nodes(j,m) = mesh_unitlength * IO_floatValue(fileContent(l+1+i),chunkPos,j+1)
|
||||
|
|
@ -580,15 +581,15 @@ subroutine inputRead_elemType(elem, &
|
|||
endif
|
||||
enddo
|
||||
|
||||
contains
|
||||
contains
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief mapping of Marc element types to internal representation
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
integer function mapElemtype(what)
|
||||
|
||||
|
||||
character(len=*), intent(in) :: what
|
||||
|
||||
|
||||
select case (IO_lc(what))
|
||||
case ( '6')
|
||||
mapElemtype = 1 ! Two-dimensional Plane Strain Triangle
|
||||
|
|
@ -630,20 +631,20 @@ end subroutine inputRead_elemType
|
|||
!> @brief Stores node IDs
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
function inputRead_connectivityElem(nElem,nNodes,fileContent)
|
||||
|
||||
|
||||
integer, intent(in) :: &
|
||||
nElem, &
|
||||
nNodes !< number of nodes per element
|
||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
|
||||
integer, dimension(nNodes,nElem) :: &
|
||||
inputRead_connectivityElem
|
||||
|
||||
|
||||
integer, allocatable, dimension(:) :: chunkPos
|
||||
|
||||
|
||||
integer, dimension(1+nElem) :: contInts
|
||||
integer :: i,k,j,t,e,l,nNodesAlreadyRead
|
||||
|
||||
|
||||
do l = 1, size(fileContent)
|
||||
chunkPos = IO_stringPos(fileContent(l))
|
||||
if(chunkPos(1) < 1) cycle
|
||||
|
|
@ -694,7 +695,7 @@ subroutine inputRead_microstructureAndHomogenization(microstructureAt,homogeniza
|
|||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||
|
||||
integer, allocatable, dimension(:) :: chunkPos
|
||||
|
||||
|
||||
integer, dimension(1+nElem) :: contInts
|
||||
integer :: i,j,t,sv,myVal,e,nNodesAlreadyRead,l,k,m
|
||||
|
||||
|
|
@ -727,42 +728,41 @@ subroutine inputRead_microstructureAndHomogenization(microstructureAt,homogeniza
|
|||
endif
|
||||
endif
|
||||
enddo
|
||||
|
||||
|
||||
end subroutine inputRead_microstructureAndHomogenization
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief Calculates cell node coordinates from element node coordinates
|
||||
!> @brief Determine cell connectivity and definition of cell nodes
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||
elem,connectivity_elem)
|
||||
|
||||
type(tCellNodeDefinition), dimension(:), intent(out) :: cellNodeDefinition ! definition of cell nodes for increasing number of parents
|
||||
integer, dimension(:,:,:),intent(out) :: connectivity_cell
|
||||
|
||||
|
||||
type(tElement), intent(in) :: elem ! element definition
|
||||
integer, dimension(:,:), intent(in) :: connectivity_elem ! connectivity of the elements
|
||||
|
||||
|
||||
integer,dimension(:), allocatable :: candidates_local
|
||||
integer,dimension(:,:), allocatable :: parentsAndWeights,candidates_global
|
||||
|
||||
integer :: e, n, c, p, s,i,m,j,nParentNodes,nCellNode,Nelem,candidateID
|
||||
|
||||
|
||||
integer :: e,n,c,p,s,i,m,j,&
|
||||
nParentNodes,nCellNode,Nelem,candidateID
|
||||
|
||||
Nelem = size(connectivity_elem,2)
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! initialize global connectivity to negative local connectivity
|
||||
connectivity_cell = -spread(elem%cell,3,Nelem) ! local cell node ID
|
||||
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! set connectivity of cell nodes that coincide with FE nodes (defined by 1 parent node)
|
||||
! and renumber local (negative) to global (positive) node ID
|
||||
do e = 1, Nelem
|
||||
do c = 1, elem%NcellNodes
|
||||
realNode: if (count(elem%cellNodeParentNodeWeights(:,c) /= 0) == 1) then
|
||||
where(connectivity_cell(:,:,e) == -c)
|
||||
connectivity_cell(:,:,e) = connectivity_elem(c,e)
|
||||
end where
|
||||
where(connectivity_cell(:,:,e) == -c) connectivity_cell(:,:,e) = connectivity_elem(c,e)
|
||||
endif realNode
|
||||
enddo
|
||||
enddo
|
||||
|
|
@ -772,7 +772,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
!---------------------------------------------------------------------------------------------------
|
||||
! set connectivity of cell nodes that are defined by 2,...,nNodes real nodes
|
||||
do nParentNodes = 2, elem%nNodes
|
||||
|
||||
|
||||
! get IDs of local cell nodes that are defined by the current number of parent nodes
|
||||
candidates_local = [integer::]
|
||||
do c = 1, elem%NcellNodes
|
||||
|
|
@ -780,11 +780,11 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
candidates_local = [candidates_local,c]
|
||||
enddo
|
||||
s = size(candidates_local)
|
||||
|
||||
|
||||
if (allocated(candidates_global)) deallocate(candidates_global)
|
||||
allocate(candidates_global(nParentNodes*2+2,s*Nelem)) ! stores parent node ID + weight together with element ID and cellnode id (local)
|
||||
parentsAndWeights = reshape([(0, i = 1,2*nParentNodes)],[nParentNodes,2]) ! (re)allocate
|
||||
|
||||
|
||||
do e = 1, Nelem
|
||||
do i = 1, size(candidates_local)
|
||||
candidateID = (e-1)*size(candidates_local)+i ! including duplicates, runs to (Nelem*size(candidates_local))
|
||||
|
|
@ -792,18 +792,18 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
p = 0
|
||||
do j = 1, size(elem%cellNodeParentNodeWeights(:,c))
|
||||
if (elem%cellNodeParentNodeWeights(j,c) /= 0) then ! real node 'j' partly defines cell node 'c'
|
||||
p = p + 1
|
||||
p = p + 1
|
||||
parentsAndWeights(p,1:2) = [connectivity_elem(j,e),elem%cellNodeParentNodeWeights(j,c)]
|
||||
endif
|
||||
enddo
|
||||
! store (and order) real node IDs and their weights together with the element number and local ID
|
||||
do p = 1, nParentNodes
|
||||
m = maxloc(parentsAndWeights(:,1),1)
|
||||
|
||||
|
||||
candidates_global(p, candidateID) = parentsAndWeights(m,1)
|
||||
candidates_global(p+nParentNodes, candidateID) = parentsAndWeights(m,2)
|
||||
candidates_global(nParentNodes*2+1:nParentNodes*2+2,candidateID) = [e,c]
|
||||
|
||||
|
||||
parentsAndWeights(m,1) = -huge(parentsAndWeights(m,1)) ! out of the competition
|
||||
enddo
|
||||
enddo
|
||||
|
|
@ -811,7 +811,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
|
||||
! sort according to real node IDs + weight (from left to right)
|
||||
call math_sort(candidates_global,sortDim=1) ! sort according to first column
|
||||
|
||||
|
||||
do p = 2, nParentNodes*2
|
||||
n = 1
|
||||
do while(n <= size(candidates_local)*Nelem)
|
||||
|
|
@ -826,11 +826,11 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
n = e+1
|
||||
enddo
|
||||
enddo
|
||||
|
||||
|
||||
i = uniqueRows(candidates_global(1:2*nParentNodes,:))
|
||||
allocate(cellNodeDefinition(nParentNodes-1)%parents(i,nParentNodes))
|
||||
allocate(cellNodeDefinition(nParentNodes-1)%weights(i,nParentNodes))
|
||||
|
||||
|
||||
i = 1
|
||||
n = 1
|
||||
do while(n <= size(candidates_local)*Nelem)
|
||||
|
|
@ -846,7 +846,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
where (connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) == -candidates_global(nParentNodes*2+2,n+j)) ! still locally defined
|
||||
connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) = nCellNode + 1 ! gets current new cell node id
|
||||
end where
|
||||
|
||||
|
||||
j = j+1
|
||||
enddo
|
||||
nCellNode = nCellNode + 1
|
||||
|
|
@ -863,7 +863,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
!> @brief count unique rows (same rows need to be stored consecutively)
|
||||
!------------------------------------------------------------------------------------------------
|
||||
pure function uniqueRows(A) result(u)
|
||||
|
||||
|
||||
integer, dimension(:,:), intent(in) :: A !< array, rows need to be sorted
|
||||
|
||||
integer :: &
|
||||
|
|
@ -882,14 +882,14 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
|||
u = u+1
|
||||
r = r+d
|
||||
enddo
|
||||
|
||||
|
||||
end function uniqueRows
|
||||
|
||||
end subroutine buildCells
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief Calculates cell node coordinates from element node coordinates
|
||||
!> @brief Calculate cell node coordinates from element node coordinates
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine buildCellNodes(node_cell, &
|
||||
definition,node_elem)
|
||||
|
|
@ -897,9 +897,9 @@ subroutine buildCellNodes(node_cell, &
|
|||
real(pReal), dimension(:,:), intent(out) :: node_cell !< cell node coordinates
|
||||
type(tCellNodeDefinition), dimension(:), intent(in) :: definition !< cell node definition (weights and parents)
|
||||
real(pReal), dimension(:,:), intent(in) :: node_elem !< element nodes
|
||||
|
||||
|
||||
integer :: i, j, k, n
|
||||
|
||||
|
||||
n = size(node_elem,2)
|
||||
node_cell(:,1:n) = node_elem !< initial nodes coincide with element nodes
|
||||
|
||||
|
|
@ -914,12 +914,12 @@ subroutine buildCellNodes(node_cell, &
|
|||
node_cell(:,n) = node_cell(:,n)/real(sum(definition(i)%weights(j,:)),pReal)
|
||||
enddo
|
||||
enddo
|
||||
|
||||
|
||||
end subroutine buildCellNodes
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief Calculates IP coordinates as center of cell
|
||||
!> @brief Calculate IP coordinates as center of cell
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine buildIPcoordinates(IPcoordinates, &
|
||||
connectivity_cell,node_cell)
|
||||
|
|
@ -927,7 +927,7 @@ subroutine buildIPcoordinates(IPcoordinates, &
|
|||
real(pReal), dimension(:,:), intent(out):: IPcoordinates !< cell-center/IP coordinates
|
||||
integer, dimension(:,:), intent(in) :: connectivity_cell !< connectivity for each cell
|
||||
real(pReal), dimension(:,:), intent(in) :: node_cell !< cell node coordinates
|
||||
|
||||
|
||||
integer :: i, n
|
||||
|
||||
do i = 1, size(connectivity_cell,2)
|
||||
|
|
@ -938,7 +938,7 @@ subroutine buildIPcoordinates(IPcoordinates, &
|
|||
enddo
|
||||
IPcoordinates(:,i) = IPcoordinates(:,i)/real(size(connectivity_cell,1),pReal)
|
||||
enddo
|
||||
|
||||
|
||||
end subroutine buildIPcoordinates
|
||||
|
||||
|
||||
|
|
@ -948,11 +948,11 @@ end subroutine buildIPcoordinates
|
|||
!> 2D cells assume an element depth of 1.0
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
function IPvolume(elem,node,connectivity)
|
||||
|
||||
|
||||
type(tElement), intent(in) :: elem
|
||||
real(pReal), dimension(:,:), intent(in) :: node
|
||||
integer, dimension(:,:,:), intent(in) :: connectivity
|
||||
|
||||
|
||||
real(pReal), dimension(elem%nIPs,size(connectivity,3)) :: IPvolume
|
||||
real(pReal), dimension(3) :: x0,x1,x2,x3,x4,x5,x6,x7
|
||||
|
||||
|
|
@ -1011,19 +1011,19 @@ function IPareaNormal(elem,nElem,connectivity,node)
|
|||
integer, intent(in) :: nElem
|
||||
integer, dimension(:,:,:), intent(in) :: connectivity
|
||||
real(pReal), dimension(:,:), intent(in) :: node
|
||||
|
||||
|
||||
real(pReal), dimension(3,elem%nIPneighbors,elem%nIPs,nElem) :: ipAreaNormal
|
||||
|
||||
real(pReal), dimension (3,size(elem%cellFace,1)) :: nodePos
|
||||
integer :: e,i,f,n,m
|
||||
|
||||
|
||||
m = size(elem%cellFace,1)
|
||||
|
||||
do e = 1,nElem
|
||||
do i = 1,elem%nIPs
|
||||
do f = 1,elem%nIPneighbors
|
||||
nodePos = node(1:3,connectivity(elem%cellface(1:m,f),i,e))
|
||||
|
||||
|
||||
select case (elem%cellType)
|
||||
case (1,2) ! 2D 3 or 4 node
|
||||
IPareaNormal(1,f,i,e) = nodePos(2,2) - nodePos(2,1) ! x_normal = y_connectingVector
|
||||
|
|
@ -1038,7 +1038,7 @@ function IPareaNormal(elem,nElem,connectivity,node)
|
|||
! the sum has to be divided by two; this whole prcedure tries to compensate for
|
||||
! probable non-planar cell surfaces
|
||||
IPareaNormal(1:3,f,i,e) = 0.0_pReal
|
||||
do n = 1, m
|
||||
do n = 1, m
|
||||
IPareaNormal(1:3,f,i,e) = IPareaNormal(1:3,f,i,e) &
|
||||
+ math_cross(nodePos(1:3,mod(n+0,m)+1) - nodePos(1:3,n), &
|
||||
nodePos(1:3,mod(n+1,m)+1) - nodePos(1:3,n)) * 0.5_pReal
|
||||
|
|
|
|||
|
|
@ -464,6 +464,8 @@ subroutine selfTest
|
|||
real(pReal), dimension(4) :: qu
|
||||
type(quaternion) :: q, q_2
|
||||
|
||||
if(dNeq(abs(P),1.0_pReal)) call IO_error(0,ext_msg='P not in {-1,+1}')
|
||||
|
||||
call random_number(qu)
|
||||
qu = (qu-0.5_pReal) * 2.0_pReal
|
||||
q = quaternion(qu)
|
||||
|
|
|
|||
|
|
@ -574,6 +574,7 @@ end function om2qu
|
|||
!---------------------------------------------------------------------------------------------------
|
||||
!> @author Marc De Graef, Carnegie Mellon University
|
||||
!> @brief orientation matrix to Euler angles
|
||||
!> @details Two step check for special cases to avoid invalid operations (not needed for python)
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
pure function om2eu(om) result(eu)
|
||||
|
||||
|
|
@ -581,16 +582,16 @@ pure function om2eu(om) result(eu)
|
|||
real(pReal), dimension(3) :: eu
|
||||
real(pReal) :: zeta
|
||||
|
||||
if (abs(om(3,3)) < 1.0_pReal) then
|
||||
zeta = 1.0_pReal/sqrt(1.0_pReal-om(3,3)**2.0_pReal)
|
||||
if (dNeq(abs(om(3,3)),1.0_pReal,1.e-8_pReal)) then
|
||||
zeta = 1.0_pReal/sqrt(math_clip(1.0_pReal-om(3,3)**2.0_pReal,1e-64_pReal,1.0_pReal))
|
||||
eu = [atan2(om(3,1)*zeta,-om(3,2)*zeta), &
|
||||
acos(om(3,3)), &
|
||||
acos(math_clip(om(3,3),-1.0_pReal,1.0_pReal)), &
|
||||
atan2(om(1,3)*zeta, om(2,3)*zeta)]
|
||||
else
|
||||
eu = [atan2(om(1,2),om(1,1)), 0.5_pReal*PI*(1.0_pReal-om(3,3)),0.0_pReal ]
|
||||
end if
|
||||
|
||||
where(eu<0.0_pReal) eu = mod(eu+2.0_pReal*PI,[2.0_pReal*PI,PI,2.0_pReal*PI])
|
||||
where(abs(eu) < 1.e-8_pReal) eu = 0.0_pReal
|
||||
where(eu<0.0_pReal) eu = mod(eu+2.0_pReal*PI,[2.0_pReal*PI,PI,2.0_pReal*PI])
|
||||
|
||||
end function om2eu
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue