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DAMASK_EICMD
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Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development

This commit is contained in:
Test User 2016-12-08 16:42:14 +01:00
parent 9829db31e4 c8f321356d
commit 96669b0ebd
1 changed files with 13 additions and 4 deletions
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17
processing/pre/geom_grainGrowth.py
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@ -109,6 +109,15 @@ for name in filenames:
for smoothIter in range(options.N):
# replace immutable microstructures with closest mutable ones
index = ndimage.morphology.distance_transform_edt(np.in1d(microstructure,options.immutable).reshape(grid),
return_distances = False,
return_indices = True)
microstructure = microstructure[index[0],
index[1],
index[2]]
interfaceEnergy = np.zeros(microstructure.shape)
for i in (-1,0,1):
for j in (-1,0,1):
@ -146,7 +155,7 @@ for name in filenames:
np.where(
ndimage.morphology.binary_dilation(interfaceEnergy > 0.,
structure = struc,
iterations = int(round(options.d*2.))),# fat boundary
iterations = int(round(options.d*2.))-1),# fat boundary
periodic_bulkEnergy[grid[0]/2:-grid[0]/2, # retain filled energy on fat boundary...
grid[1]/2:-grid[1]/2,
grid[2]/2:-grid[2]/2], # ...and zero everywhere else
@ -158,7 +167,7 @@ for name in filenames:
# transform voxels close to interface region
index = ndimage.morphology.distance_transform_edt(periodic_diffusedEnergy >= 0.5*np.amax(periodic_diffusedEnergy),
index = ndimage.morphology.distance_transform_edt(periodic_diffusedEnergy >= 0.95*np.amax(periodic_diffusedEnergy),
return_distances = False,
return_indices = True) # want index of closest bulk grain
@ -173,9 +182,9 @@ for name in filenames:
grid[2]/2:-grid[2]/2] # extent grains into interface region
immutable = np.zeros(microstructure.shape, dtype=bool)
# find locations where immutable microstructures have been or are now
# find locations where immutable microstructures have been (or are now)
for micro in options.immutable:
immutable += np.logical_or(microstructure == micro, microstructure_original == micro)
immutable += microstructure_original == micro
# undo any changes involving immutable microstructures
microstructure = np.where(immutable, microstructure_original,microstructure)