directly convert to geom file + material config

processing/misc/DREAM3D_toTable.py

@@ -1,84 +0,0 @@
-#!/usr/bin/env python2.7
-# -*- coding: UTF-8 no BOM -*-
-
-import os,h5py
-import numpy as np
-from optparse import OptionParser
-import damask
-
-scriptName = os.path.splitext(os.path.basename(__file__))[0]
-scriptID   = ' '.join([scriptName,damask.version])
-
-
-#--------------------------------------------------------------------------------------------------
-#                                MAIN
-#--------------------------------------------------------------------------------------------------
-
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog [dream3dfile[s]]', description = """
-Convert DREAM3D file to ASCIItable. Works for 3D datasets, but, hey, its not called DREAM2D ;)
-
-""", version = scriptID)
-
-parser.add_option('-d','--data',
-                  dest = 'data',
-                  action = 'extend', metavar = '<string LIST>',
-                  help = 'data to extract from DREAM3D file')
-parser.add_option('-c','--container',
-                  dest = 'container', metavar = 'string',
-                  help = 'root container(group) in which data is stored [%default]')
-
-parser.set_defaults(container="ImageDataContainer",
-                   )
-
-(options, filenames) = parser.parse_args()
-
-if options.data is None:
-  parser.error('No data selected')
-
-rootDir ='DataContainers/'+options.container
-
-# --- loop over input files -------------------------------------------------------------------------
-
-if filenames == []: parser.error('no input file specified.')
-
-for name in filenames:
-  try:
-    table = damask.ASCIItable(outname = os.path.splitext(name)[0]+'.txt',
-                              buffered = False
-                              )
-  except: continue
-  damask.util.report(scriptName,name)
-
-  inFile = h5py.File(name, 'r')
-  try:
-    grid = inFile[rootDir+'/_SIMPL_GEOMETRY/DIMENSIONS'][...]
-  except:
-    damask.util.croak('Group {} not found'.format(options.container))
-    table.close(dismiss = True)
-    continue
-  
-# --- read comments --------------------------------------------------------------------------------
-                    
-  coords = (np.mgrid[0:grid[2], 0:grid[1], 0: grid[0]]).reshape(3, -1).T                             
-  table.data = (np.fliplr(coords)*inFile[rootDir+'/_SIMPL_GEOMETRY/SPACING'][...] \
-             + inFile[rootDir+'/_SIMPL_GEOMETRY/ORIGIN'][...] \
-             + inFile[rootDir+'/_SIMPL_GEOMETRY/SPACING'][...]*0.5)
-  labels = ['1_pos','2_pos','3_pos']
-  for data in options.data:
-    try:
-      l = np.prod(inFile[rootDir+'/CellData/'+data].shape[3:])
-      labels+=['{}_{}'.format(i+1,data.replace(' ','')) for i in range(l)] if l >1 else [data.replace(' ','')]
-    except KeyError:
-      damask.util.croak('Data {} not found'.format(data))
-      pass
-    table.data = np.hstack((table.data,
-                            inFile[rootDir+'/CellData/'+data][...].reshape(grid.prod(),l)))
-    
-# ------------------------------------------ assemble header ---------------------------------------
-  table.labels_clear()
-  table.labels_append(labels,reset = True)
-  table.head_write()
-  
-# ------------------------------------------ finalize output ---------------------------------------
-  table.data_writeArray()
-  table.close()